BAC Information

Click to search

BAC

Clone NameB6Ng01-021E07
Chromosome4 (Build37)7 (Build37)
Map Location 48,587,428 - 48,588,43751,159,026 - 51,159,458
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik
Downstream geneTmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021E07.bB6Ng01-021E07.g
ACCDH853821DH853822
length999140
definitionDH853821|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E07, 5' end.DH853822|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,587,428 - 48,588,437)(51,159,026 - 51,159,458)
sequence
gaattccatggttttttttcctcaagaatcttactgtatgtcggactctc
ctcccctctcaatgaatccctgtcatcaccatctgagtattttggttctt
cctctgcccacagccacctcctgcttgctttcttcccttcactgtcaaac
tgtctgtatgttttgtctccatttcctgctttgtattcatattacactgg
actccaacctagaatctgcccttgccacgttacgcagtggttcttgctgt
gtgtgatccctggtgacttcaaatgacaggtcatttggaaactattcagt
tttcacatttgcttcacctcttagcagcatttgaccagttggccacaccc
tactttttgacacacttttgtccttgatcaccatgatactgttcttttcc
aattctttgaattttctgacagtgcctatacagttctctccacttgactt
tctcagaagtagcacagaccttcttgttttctagttagccattatattcc
ttttctcctcctcctcctcttctcctcttcttcttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttctttccttctt
ctccttcttcttctttcctccttctccttctcctttttcttccttctcct
tctccttctcctgtttttctgagacagggtttctctgtgtagtcctggct
gtcctggaactcactttgtagaccaggctggcctcgaactcagaaatcca
cctgcctctgcctcccaagtgctgggattaaaggtgtgcgccaccactgc
ccagctatattcctttcatgactctttatacatgtccagtgcaaatctct
ttttgcctgatgagatttattaatgggtaaagagatctctttaatggcta
tttgaattttccatcatgatcccctaaactcatgtatatctggaagaaac
ccacatcccatccccaaactgcttttctcaggttgggtgtttaaaatac
caaagcccatgtttttatcttctatttgtttattccccactttcctctct
ctctctctctctctctctctctctctctctctctctccctcccccctccg
tccccctccttccatccctccccctcctgtctcctcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48587428_48588437
seq2: B6Ng01-021E07.b_46_1044

seq1  GAATTCCATGGTTTTTTTTCCTCAAGAATCTTACTGTATGTCGGACTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTTTTTTTTCCTCAAGAATCTTACTGTATGTCGGACTCTC  50

seq1  CTCCCCTCTCAATGAATCCCTGTCATCACCATCTGAGTATTTTGGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCTCAATGAATCCCTGTCATCACCATCTGAGTATTTTGGTTCTT  100

seq1  CCTCTGCCCACAGCCACCTCCTGCTTGCTTTCTTCCCTTCACTGTCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCACAGCCACCTCCTGCTTGCTTTCTTCCCTTCACTGTCAAAC  150

seq1  TGTCTGTATGTTTTGTCTCCATTTCCTGCTTTGTATTCATATTACACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTATGTTTTGTCTCCATTTCCTGCTTTGTATTCATATTACACTGG  200

seq1  ACTCCAACCTAGAATCTGCCCTTGCCACGTTACGCAGTGGTTCTTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAACCTAGAATCTGCCCTTGCCACGTTACGCAGTGGTTCTTGCTGT  250

seq1  GTGTGATCCCTGGTGACTTCAAATGACAGGTCATTTGGAAACTATTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCCCTGGTGACTTCAAATGACAGGTCATTTGGAAACTATTCAGT  300

seq1  TTTCACATTTGCTTCACCTCTTAGCAGCATTTGACCAGTTGGCCACACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTTGCTTCACCTCTTAGCAGCATTTGACCAGTTGGCCACACCC  350

seq1  TACTTTTTGACACACTTTTGTCCTTGATCACCATGATACTGTTCTTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTGACACACTTTTGTCCTTGATCACCATGATACTGTTCTTTTCC  400

seq1  AATTCTTTGAATTTTCTGACAGTGCCTATACAGTTCTCTCCACTTGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGAATTTTCTGACAGTGCCTATACAGTTCTCTCCACTTGACTT  450

seq1  TCTCAGAAGTAGCACAGACCTTCTTGTTTTCTAGTTAGCCATTATATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAGTAGCACAGACCTTCTTGTTTTCTAGTTAGCCATTATATTCC  500

seq1  TTTTCTCCTCCTCCTCCTCTTCTCCTCTTCTTCTTCTTCTTCTTCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTCCTCCTCCTCTTCTCCTCTTCTTCTTCTTCTTCTTCTTCTT  550

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCCTTCTT  600

seq1  CTCCTTCTTCTTCTTTCCTCCTTCTCCTTCTCCTTTTTCTTCCTTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTTCTTCTTTCCTCCTTCTCCTTCTCCTTTTTCTTCCTTCTCCT  650

seq1  TCTCCTTCTCCTGTTTTTCTGAGACAGGGTTTCTCTGTGTAGTCCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTCCTGTTTTTCTGAGACAGGGTTTCTCTGTGTAGTCCTGGCT  700

seq1  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCA  750

seq1  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGC  800

seq1  CCAGCTATATTCCTTTTCATGACTCATTTATACATGTCCAGTGCAAATCT  850
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  CCAGCTATATTCC-TTTCATGACTC-TTTATACATGTCCAGTGCAAATCT  848

seq1  C-TTTTGCCTGATGAGATTTATTTAATGGCTAAAGAGATCTCTCTAATGG  899
      | ||||||||||||||||||| ||||||| ||||||||||||| ||||||
seq2  CTTTTTGCCTGATGAGATTTA-TTAATGGGTAAAGAGATCTCTTTAATGG  897

seq1  CTATTTGAATTTTCCATCAGTGATCCCCTAAACTCAATGTATATCTGGAA  949
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  CTATTTGAATTTTCCATCA-TGATCCCCTAAACTC-ATGTATATCTGGAA  945

seq1  GTAAACCCACATCCCATCCCCAAACCTGCTTTTCCTCTAGGGTTGGGTGT  999
      | |||||||||||||||||||||| |||||||   |||  ||||||||||
seq2  G-AAACCCACATCCCATCCCCAAA-CTGCTTT---TCTCAGGTTGGGTGT  990

seq1  TTTATAAATAC  1010
      ||   ||||||
seq2  TT--AAAATAC  999

seq1: chr7_51159026_51159458
seq2: B6Ng01-021E07.g_114_210 (reverse)

seq1  TTCTGAGGAGACAGGAGTATGCTAAGTCTCTTGCAGCCAGGCCATCCCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCACCTCTTCCCAGGCTGCCCTTCAAGGATGTTTGACCAGCAGGCAGCCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATGCGATGGCATCTCTGGAGATCACTTTTGCTTGCTGTCCCAGTAGTGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTACTGTCCCTCTTACAACCAACTTTTTACTGCTTAGGACAGTAAATA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTCTGTGGAGGTGCATCTGTTTTCAGTGTAGGATAATAAAGATAACAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCACAGAAATGAACACTGACTGTTCTTCCACAGGCTTTCTTATGTACT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAAGTATTGTGTTTATTTTAGAGTTTGGAGAGAGAGAGAGAGAGAGAG  350
                        ||  |||      |||| || ||| | ||| |
seq2  ------------------TTCTGAG------GAGACAG-GAGGGGGAGGG  25

seq1  AGAGAGAGAGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAG  400
      |  ||  ||| | |   | |           | | ||| |||||||||||
seq2  ATGGAAGGAGGGGGACGGAG-----------GGGGGAGGGAGAGAGAGAG  64

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  433
      |||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  97