BAC Information

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BAC

Clone NameB6Ng01-021F16
Chromosome7 (Build37)
Map Location 5,685,383 - 5,846,708
singlet/doubletdoublet
Overlap geneLOC100041637, V1rd1, LOC100041647, V1rd11
Upstream geneSuv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627
Downstream geneLOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021F16.bB6Ng01-021F16.g
ACCDH853883DH853884
length1,0561,001
definitionDH853883|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F16, 5' end.DH853884|Mus musculus domesticus DNA, BAC clone: B6Ng01-021F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,685,383 - 5,686,459)(5,845,692 - 5,846,708)
sequence
gaattctggacatttggaagagcagtcagtgctcttaacagctgagccat
ctctctagccctctagttctttctttatctaagtctgttttcttctgatc
tctcttaagaagcatatataaaattgtaatcattatagaaaacacaatta
tttgtatactgataaatgaaaaatgtatatggaatccccatgccttttct
gctttttaacacaaagcatatttttctttttaagtctctccttcccacag
agacctcactttattgactttaaactattgcttctatggttatctacacc
tcttttttattttattttattttattttatttattttatttttattctat
ttagcacttaagcacattcaaccatactgtacctggccagaggcttgtct
gtgtttgaaaattcactgttcatctggacctggcttcagcaacccaggtc
atcctccatgactgacctgacatgaagggcaccatgagctgtcatcagct
tctcagatgtctccttccattgtgccaagagctcatggactctgtctacc
accaactcttgctatcctttggtgacagttgagcctcctgtctgtggaca
atggctgatagtcctaggccaacatgtccagctaggatgggcagggccag
cacctctaatttttacacactctgggaaagtggtgacagatgctgcatca
gccactgtagctcaattgatcctggttaggcaatcacatggcattaaagg
cgtgtaggcaatgattgcatcgacagagctctaatagcagaagccttaat
ttcagatcctgttgctttggccaaagtgatcattaaaagttcatctctct
agcactgacatagatcactaaggatcaggcaagaatgattgtaaacatgt
cctaaatgtatacattatatccagtgccacatttaggagttatccatgag
gtcttatgcctaatcatatttggcaatggatgcaactatgcagatttgga
aataaatatatacatgtttgtatgacactgtaggattctttgcttcttgc
tactgg
gaattcactttctggccaggctggcctcgtaattagaaatcctcctgcct
ttgtctcccaagtgctgggattaaaggcgtggacccccatgcccatctga
gaattgccttttctaactctacgaagaattgagttggaattagtggcaag
atttttccaactatgacaatgtgtaaataagaagaatttgagaaagacaa
acaagtctagtgcattttaatggtgtcttagttaaggtttcagtgttgtg
accatacaccatgactaaagcaactttgataaggaccacatttaattggg
gcttgcttacaagcacagaggtttagcccatggccattaaagcatgagaa
tggcaattctaggcaggcatgatatagcaggagctaagagttttacctct
tcatcagaagtcttctagcagaagacaaactcccatgtggttaggaggag
gatctcattgtccatctccacattgacacacttcctccaaaaagcccaca
cctattccaatagggccacactttgtacttgtgccactttctgggccagg
cacttcaaaatcattacagatagtaagagttatttttttcaaaggtagta
atgttagttttcagtttaggagtcaaaagccattgacatggatctagtgg
agaaatgacctttatcaagggggaggggagctgagttgcccaacctcctt
ttgtttcaggaatattgtttctaagtagaaaaattctatgttttcagcag
agaatttggctcagtattgtgtgccacctatattatataaggcctggaat
ctacccttgtttgtttgttcatgggtagagctactaagctaatataatag
tgtgtgacctgctgtaacacatacagtgtagcatgcctttactaacacta
tgcagttttaaacagtgatctactaaaatatcatcttttgagctcaagaa
aatgcaaaacaaaactattttttcatgtttaacccattaactaatattga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5685383_5686459
seq2: B6Ng01-021F16.b_46_1101

seq1  GAATTCTGGACATTTGGAAGAGCAGTCAGTGCTCTTAACAGCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGACATTTGGAAGAGCAGTCAGTGCTCTTAACAGCTGAGCCAT  50

seq1  CTCTCTAGCCCTCTAGTTCTTTCTTTATCTAAGTCTGTTTTCTTCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCCCTCTAGTTCTTTCTTTATCTAAGTCTGTTTTCTTCTGATC  100

seq1  TCTCTTAAGAAGCATATATAAAATTGTAATCATTATAGAAAACACAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAGAAGCATATATAAAATTGTAATCATTATAGAAAACACAATTA  150

seq1  TTTGTATACTGATAAATGAAAAATGTATATGGAATCCCCATGCCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATACTGATAAATGAAAAATGTATATGGAATCCCCATGCCTTTTCT  200

seq1  GCTTTTTAACACAAAGCATATTTTTCTTTTTAAGTCTCTCCTTCCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAACACAAAGCATATTTTTCTTTTTAAGTCTCTCCTTCCCACAG  250

seq1  AGACCTCACTTTATTGACTTTAAACTATTGCTTCTATGGTTATCTACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCACTTTATTGACTTTAAACTATTGCTTCTATGGTTATCTACACC  300

seq1  TCTTTTTTATTTTATTTTATTTTATTTTATTTATTTTATTTTTATTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATTTTATTTTATTTTATTTTATTTATTTTATTTTTATTCTAT  350

seq1  TTAGCACTTAAGCACATTCAACCATACTGTACCTGGCCAGAGGCTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTTAAGCACATTCAACCATACTGTACCTGGCCAGAGGCTTGTCT  400

seq1  GTGTTTGAAAATTCACTGTTCATCTGGACCTGGCTTCAGCAACCCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAAAATTCACTGTTCATCTGGACCTGGCTTCAGCAACCCAGGTC  450

seq1  ATCCTCCATGACTGACCTGACATGAAGGGCACCATGAGCTGTCATCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCATGACTGACCTGACATGAAGGGCACCATGAGCTGTCATCAGCT  500

seq1  TCTCAGATGTCTCCTTCCATTGTGCCAAGAGCTCATGGACTCTGTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATGTCTCCTTCCATTGTGCCAAGAGCTCATGGACTCTGTCTACC  550

seq1  ACCAACTCTTGCTATCCTTTGGTGACAGTTGAGCCTCCTGTCTGTGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTCTTGCTATCCTTTGGTGACAGTTGAGCCTCCTGTCTGTGGACA  600

seq1  ATGGCTGATAGTCCTAGGCCAACATGTCCAGCTAGGATGGGCAGGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGATAGTCCTAGGCCAACATGTCCAGCTAGGATGGGCAGGGCCAG  650

seq1  CACCTCTAATTTTTACACACTCTGGGAAAGTGGTGACAGATGCTGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTAATTTTTACACACTCTGGGAAAGTGGTGACAGATGCTGCATCA  700

seq1  GCCACTGTAGCTCAATTGATCCTGGTTAGGCAATCACATGGCATTAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTAGCTCAATTGATCCTGGTTAGGCAATCACATGGCATTAAAGG  750

seq1  CGTGTAGGCAATGATTGCATCGACAGAGCTCTAATAGCAGAAGCCTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAGGCAATGATTGCATCGACAGAGCTCTAATAGCAGAAGCCTTAAT  800

seq1  TTCAGATCCTGTTGCTTTGGCCAAAGTGATCATTAAAAGTTTCATCTCTC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCAGATCCTGTTGCTTTGGCCAAAGTGATCATTAAAAG-TTCATCTCTC  849

seq1  TAGCACTGACATAAGATCACTAAGGATCAGGCAAGAATGATTGTAAAACA  900
      |||||||||||| ||||||||||||||||||||||||||||||||||   
seq2  TAGCACTGACAT-AGATCACTAAGGATCAGGCAAGAATGATTGTAAA--C  896

seq1  ATGTCCTAAATGTATTACATTATATCCAGTGCCACATTTAGGAGTTAATC  950
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  ATGTCCTAAATGTA-TACATTATATCCAGTGCCACATTTAGGAGTT-ATC  944

seq1  CATGAGGTCTTATGCCTAATCATATTTGGCAAATGGATGCAACTTATGCA  1000
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  CATGAGGTCTTATGCCTAATCATATTTGGC-AATGGATGCAAC-TATGCA  992

seq1  GAATTTGGAAAATTAAAATATATACATGTTTGTATTGACACTTGTTCAGG  1050
      | |||||||||    ||||||||||||||||||| |||||| |||  |||
seq2  G-ATTTGGAAA---TAAATATATACATGTTTGTA-TGACAC-TGT--AGG  1034

seq1  ATTTCTTTTTGCTTCTTTGCATACTGG  1077
      ||   | |||||||| |||| ||||||
seq2  AT---TCTTTGCTTC-TTGC-TACTGG  1056

seq1: chr7_5845692_5846708
seq2: B6Ng01-021F16.g_67_1067 (reverse)

seq1  TTCAATATTTAAGTTAATGGTGTTAAAAACATGTAAAAATTAGTATTTGT  50
      |||||||||  ||||||||| |||  ||||||| ||||| |||| |||| 
seq2  TTCAATATT--AGTTAATGG-GTT--AAACATG-AAAAAATAGT-TTTG-  42

seq1  TTTTGCATTGTACTGTGAGCTCAAAAGACTGATATTTTAGTTAGAATCAC  100
      ||||||||| | || ||||||||||||| ||||||||||| ||| |||||
seq2  TTTTGCATT-TTCT-TGAGCTCAAAAGA-TGATATTTTAG-TAG-ATCAC  87

seq1  TGTTTAAAAACTGCATAGTGTTTAGTAATGGCATGCTAACACTGTATGTG  150
      ||||| |||||||||||||| ||||||| |||||||| ||||||||||||
seq2  TGTTT-AAAACTGCATAGTG-TTAGTAAAGGCATGCT-ACACTGTATGTG  134

seq1  TTACAGCAGGTCACACACTATTATATTAGCTTAGTAGCTCTCACCATGAA  200
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TTACAGCAGGTCACACACTATTATATTAGCTTAGTAGCTCTACCCATGAA  184

seq1  CAAACAAACAAGGGTAGATTCCAGGCCTTATATAATAATAGGTGGCACAC  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAACAAACAAGGGTAGATTCCAGGCCTTATATAAT-ATAGGTGGCACAC  233

seq1  -ATACTGAGCCAAATTCTCTGCTGAAAACATAGAATTTTTCTACTTAGAA  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAGCCAAATTCTCTGCTGAAAACATAGAATTTTTCTACTTAGAA  283

seq1  ACAATATTCCTGAAACAAAAGGAGGTTGGGCAACTCAGCTCCCCTCCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTCCTGAAACAAAAGGAGGTTGGGCAACTCAGCTCCCCTCCCCC  333

seq1  TTGATAAAGGTCATTTCTCCACTAGATCCATGTCAATGGCTTTTGACTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAGGTCATTTCTCCACTAGATCCATGTCAATGGCTTTTGACTCC  383

seq1  TAAACTGAAAACTAACATTACTACCTTTGAAAAAAATAACTCTTACTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAAAACTAACATTACTACCTTTGAAAAAAATAACTCTTACTATC  433

seq1  TGTAATGATTTTGAAGTGCCTGGCCCAGAAAGTGGCACAAGTACAAAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGATTTTGAAGTGCCTGGCCCAGAAAGTGGCACAAGTACAAAGTG  483

seq1  TGGCCCTATTGGAATAGGTGTGGGCTTTTTGGAGGAAGTGTGTCAATGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTATTGGAATAGGTGTGGGCTTTTTGGAGGAAGTGTGTCAATGTG  533

seq1  GAGATGGACAATGAGATCCTCCTCCTAACCACATGGGAGTTTGTCTTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGACAATGAGATCCTCCTCCTAACCACATGGGAGTTTGTCTTCTG  583

seq1  CTAGAAGACTTCTGATGAAGAGGTAAAACTCTTAGCTCCTGCTATATCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGACTTCTGATGAAGAGGTAAAACTCTTAGCTCCTGCTATATCAT  633

seq1  GCCTGCCTAGAATTGCCATTCTCATGCTTTAATGGCCATGGGCTAAACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTAGAATTGCCATTCTCATGCTTTAATGGCCATGGGCTAAACCT  683

seq1  CTGTGCTTGTAAGCAAGCCCCAATTAAATGTGGTCCTTATCAAAGTTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTGTAAGCAAGCCCCAATTAAATGTGGTCCTTATCAAAGTTGCT  733

seq1  TTAGTCATGGTGTATGGTCACAACACTGAAACCTTAACTAAGACACCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATGGTGTATGGTCACAACACTGAAACCTTAACTAAGACACCATT  783

seq1  AAAATGCACTAGACTTGTTTGTCTTTCTCAAATTCTTCTTATTTACACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACTAGACTTGTTTGTCTTTCTCAAATTCTTCTTATTTACACAT  833

seq1  TGTCATAGTTGGAAAAATCTTGCCACTAATTCCAACTCAATTCTTCGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGTTGGAAAAATCTTGCCACTAATTCCAACTCAATTCTTCGTAG  883

seq1  AGTTAGAAAAGGCAATTCTCAGATGGGCATGGGGGTCCACGCCTTTAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAAGGCAATTCTCAGATGGGCATGGGGGTCCACGCCTTTAATC  933

seq1  CCAGCACTTGGGAGACAAAGGCAGGAGGATTTCTAATTACGAGGCCAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGACAAAGGCAGGAGGATTTCTAATTACGAGGCCAGCC  983

seq1  TGGCCAGAAAGTGAATTC  1017
      ||||||||||||||||||
seq2  TGGCCAGAAAGTGAATTC  1001