BAC Information

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BAC

Clone NameB6Ng01-021H04
Chromosome7 (Build37)
Map Location 126,851,316 - 127,041,091
singlet/doubletdoublet
Overlap geneBC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1
Upstream gene6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1
Downstream geneDnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021H04.bB6Ng01-021H04.g
ACCDH853950DH853951
length1,1201,048
definitionDH853950|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H04, 5' end.DH853951|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,851,316 - 126,852,420)(127,040,036 - 127,041,091)
sequence
gaattcaggactggaactcaagcaggtcagaaagcaagagccgatgcaga
agccatggaaggatggatgttctttgatggcttcttcccttggcttgttc
agcctgctctcttataagaacccaagactgctagcccagagatgatccca
cctgcaaggggcctttcccccttgatcacttattgagagaatacctcaca
gctggatctcgtggaggcatttccccaactgaagctcctttctctgtgat
aaccccagcctgtgtcaagttgacacataaaaccagccagtacaccaccc
aagtatgaggatctgagtttgatcccctgagtcgtgaacatccaggtgtt
gtactgtgtacttgtaatctaacagtagggcagcaaaggcaagcagattc
ctgaggctcactggccagccagaatagcctgcttgaggagtgtgaggcca
gggagtgagcctatctcaaaatagcaggtgatggtttcttctagaaacac
acctgagattgccttctgacctacacagacatacagacaagggcacctga
actcaggtttcctagagttgttattgcacagccaccacctagtctgttgt
attatttattcataactataatactttgtattattagtgttctgatctac
ccattttccctctaagctcccccacctgccaaaacataatttattcagaa
atattcagttcatcactcatgtgtctcacacaactagaagatatccagaa
acacaggaggtgttcagaatacacttagctcataagtgtttctacagcct
gttctcctagcacttcttgtttgaacatctgaacttgtgatgaaatgccc
cccaccaaagcccatgcaactctgcctctccagatatcaattcaagaggc
tgcggcactgcctgacagaggggagccactcaccccgagtgctggaacag
tggagatgcaaactgggctggagctgtacgaggctacgacagaccgagtg
gtatgttgaggacaaagtttgttagagtttttctcagtggcccgggagat
ggtaaagacccatcttggtcatgggtgcaaacgaatccaaatcctccatg
ttcagttctctaggaatgga
gaattccagggctggtatcgtataaggtgttcctacgaagatatgacaaa
atagatcccaatgggctcatgtaaaccaacatttatcaaggaaatcagga
gtgcacacacattcttgtacaccaagtccaaaagctttgacagctgggag
agcaggaagagatttgaggccctcaaaaggtgactctcactgattgtgag
ggtggatactattgtttaacgatattaagggggactccttatttttgagg
tgttcttattgagcttcctactggcttgtacccttcttggtggtctctaa
atgtgagatctaaagaatttggggctctttctcatctactacctattcca
gggtctaggaataaaccccacatttattatctccaaccatgacttgtctt
ccagcttgtccgtctcatttctggacatcttcatgggctgtaaaatgact
ctggacatacgttccagagagcataggagattccttcccaaactgttttc
tctagagaaacatctttggtttcacattctcccatacatttcgtatccag
ttcagcattcagtctggaatgctcaagctcccaaatacattatgaatcaa
ttctcttaatttccatgtttccaccactgtcatctctcatggccttagca
acagccctttaactaccttcttttatccagcagcaatttttttaaatgta
aattaaggtttggtcattcattacacttcagggaagtaatacaaaggcca
aaaccttgctatttctgcaactccaagacttctttctcgtctgccttttg
tttaaaatgttacccacaaggcagttccttctcccattctcttttcctct
taaacctggaagaggccttctcaccacaccattcagcttctggggcagct
gctattctctgcattcatttacttataatgaaaagttcagaaaaagactt
ccttcattttgtcatttgctcatctagtaatgaactagcttcatcatcac
ctgaagtctgattcctacatccgggatcgtaggtggccttctcaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_126851316_126852420
seq2: B6Ng01-021H04.b_88_1165

seq1  GATGCAGAAGCCATGGAAGGATGGATGTTCTTTGATGGCTTCTTCCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAAGCCATGGAAGGATGGATGTTCTTTGATGGCTTCTTCCCTTG  50

seq1  GCTTGTTCAGCCTGCTCTCTTATAAGAACCCAAGACTGCTAGCCCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCAGCCTGCTCTCTTATAAGAACCCAAGACTGCTAGCCCAGAGA  100

seq1  TGATCCCACCTGCAAGGGGCCTTTCCCCCTTGATCACTTATTGAGAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCACCTGCAAGGGGCCTTTCCCCCTTGATCACTTATTGAGAGAAT  150

seq1  ACCTCACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGAAGCTCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGAAGCTCCTTTC  200

seq1  TCTGTGATAACCCCAGCCTGTGTCAAGTTGACACATAAAACCAGCCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATAACCCCAGCCTGTGTCAAGTTGACACATAAAACCAGCCAGTA  250

seq1  CACCACCCAAGTATGAGGATCTGAGTTTGATCCCCTGAGTCGTGAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCAAGTATGAGGATCTGAGTTTGATCCCCTGAGTCGTGAACATC  300

seq1  CAGGTGTTGTACTGTGTACTTGTAATCTAACAGTAGGGCAGCAAAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTGTACTGTGTACTTGTAATCTAACAGTAGGGCAGCAAAGGCAA  350

seq1  GCAGATTCCTGAGGCTCACTGGCCAGCCAGAATAGCCTGCTTGAGGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTCCTGAGGCTCACTGGCCAGCCAGAATAGCCTGCTTGAGGAGTG  400

seq1  TGAGGCCAGGGAGTGAGCCTATCTCAAAATAGCAGGTGATGGTTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGGGAGTGAGCCTATCTCAAAATAGCAGGTGATGGTTTCTTCT  450

seq1  AGAAACACACCTGAGATTGCCTTCTGACCTACACAGACATACAGACAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACACCTGAGATTGCCTTCTGACCTACACAGACATACAGACAAGG  500

seq1  GCACCTGAACTCAGGTTTCCTAGAGTTGTTATTGCACAGCCACCACCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGAACTCAGGTTTCCTAGAGTTGTTATTGCACAGCCACCACCTAG  550

seq1  TCTGTTGTATTATTTATTCATAACTATAATACTTTGTATTATTAGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTATTATTTATTCATAACTATAATACTTTGTATTATTAGTGTTC  600

seq1  TGATCTACCCATTTTCCCTCTAAGCTCCCCCACCTGCCAAAACATAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACCCATTTTCCCTCTAAGCTCCCCCACCTGCCAAAACATAATTT  650

seq1  ATTCAGAAATATTCAGTTCATCACTCATGTGTCTCACACAACTAGAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAATATTCAGTTCATCACTCATGTGTCTCACACAACTAGAAGAT  700

seq1  ATCCAGAAACACAGGAGGTGTTCAGAATACACTTAGCTCATAAGTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAACACAGGAGGTGTTCAGAATACACTTAGCTCATAAGTGTTTC  750

seq1  TACAGCCTGTTCTCCTAGCACTTCTTGTTTGAACATCTGAACTTGTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTGTTCTCCTAGCACTTCTTGTTTGAACATCTGAACTTGTGATG  800

seq1  AAATGCCCCCCACCAAAGCCCATGCAACTCTGCCTCTCCAGATATCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCCCCACCAAAGCCCATGCAACTCTGCCTCTCCAGATATCAATT  850

seq1  CAAGAGGCTGCGGCACTGCCTGACAGGAGGGGAGCCACTCAACCCCGAAG  900
      ||||||||||||||||||||||||| |||||||||||||| |||||| ||
seq2  CAAGAGGCTGCGGCACTGCCTGACA-GAGGGGAGCCACTC-ACCCCG-AG  897

seq1  TGCTGGAACAGTGGAAGATGCAAACTGGGCTGGAGCTGTACGAGGGCTAC  950
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  TGCTGGAACAGTGG-AGATGCAAACTGGGCTGGAGCTGTACGA-GGCTAC  945

seq1  GGACAGACCGAAGTGGTATGTCTGAGGGACAAAGTTTGTTTAGAAGTTTT  1000
       ||||||||| |||||||||| ||| |||||||||||| |||| ||||||
seq2  -GACAGACCG-AGTGGTATGT-TGA-GGACAAAGTTTG-TTAG-AGTTTT  989

seq1  TCCTCAGTGGCCACGGGAGATTGGGTACAAGACCCAATCTTGGGTCCAAT  1050
      | |||||||||| ||||||||  |||| ||||||| ||||| ||||  ||
seq2  T-CTCAGTGGCC-CGGGAGAT--GGTA-AAGACCC-ATCTT-GGTC--AT  1030

seq1  GTGTGCCAGACGATACCAAAATCCTCCAATGTTCATGTTCCTCATAGGAA  1100
      | ||| || |||| | | ||||||||| ||||||| ||| ||| |||| |
seq2  GGGTG-CAAACGA-ATCCAAATCCTCC-ATGTTCA-GTT-CTC-TAGG-A  1073

seq1  ATGGA  1105
      |||||
seq2  ATGGA  1078

seq1: chr7_127040036_127041091
seq2: B6Ng01-021H04.g_67_1114 (reverse)

seq1  GCCTTGAGAAAGGCCACCCAAACGATCCCGGATGTAGGAATCAGACTTCA  50
      |||||||| |||||||||   |||||||||||||||||||||||||||||
seq2  GCCTTGAG-AAGGCCACC--TACGATCCCGGATGTAGGAATCAGACTTCA  47

seq1  GGTGATGATGAAGGCTAGTTTCATTACTAAGATGAGCAAATGACAAAATG  100
      |||||||||||| ||||| ||||||||| |||||||||||||||||||||
seq2  GGTGATGATGAA-GCTAG-TTCATTACT-AGATGAGCAAATGACAAAATG  94

seq1  AAGGAAGTCTTGTTTCTGAACTTTTCATTAATAAGTAAATGAATGCAGAG  150
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AAGGAAGTCTT-TTTCTGAACTTTTCATT-ATAAGTAAATGAATGCAGAG  142

seq1  AATAGCAGCTGCCCCAGAAGCTGAATGGTGTGGTGAGAAGGCCTCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGCTGCCCCAGAAGCTGAATGGTGTGGTGAGAAGGCCTCTTCCA  192

seq1  GGTTTAAGAGGAAAAGAGAATGGGAGAAGGAACTGCCTTGTGGGTAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAGAGGAAAAGAGAATGGGAGAAGGAACTGCCTTGTGGGTAACAT  242

seq1  TTTAAACAAAAGGCAGACGAGAAAGAAGTCTTGGAGTTGCAGAAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAAAGGCAGACGAGAAAGAAGTCTTGGAGTTGCAGAAATAGCA  292

seq1  AGGTTTTGGCCTTTGTATTACTTCCCTGAAGTGTAATGAATGACCAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGGCCTTTGTATTACTTCCCTGAAGTGTAATGAATGACCAAACC  342

seq1  TTAATTTACATTTAAAAAAATTGCTGCTGGATAAAAGAAGGTAGTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTACATTTAAAAAAATTGCTGCTGGATAAAAGAAGGTAGTTAAAG  392

seq1  GGCTGTTGCTAAGGCCATGAGAGATGACAGTGGTGGAAACATGGAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGCTAAGGCCATGAGAGATGACAGTGGTGGAAACATGGAAATTA  442

seq1  AGAGAATTGATTCATAATGTATTTGGGAGCTTGAGCATTCCAGACTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTGATTCATAATGTATTTGGGAGCTTGAGCATTCCAGACTGAAT  492

seq1  GCTGAACTGGATACGAAATGTATGGGAGAATGTGAAACCAAAGATGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTGGATACGAAATGTATGGGAGAATGTGAAACCAAAGATGTTTC  542

seq1  TCTAGAGAAAACAGTTTGGGAAGGAATCTCCTATGCTCTCTGGAACGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAAAACAGTTTGGGAAGGAATCTCCTATGCTCTCTGGAACGTAT  592

seq1  GTCCAGAGTCATTTTACAGCCCATGAAGATGTCCAGAAATGAGACGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGTCATTTTACAGCCCATGAAGATGTCCAGAAATGAGACGGACA  642

seq1  AGCTGGAAGACAAGTCATGGTTGGAGATAATAAATGTGGGGTTTATTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAAGACAAGTCATGGTTGGAGATAATAAATGTGGGGTTTATTCCT  692

seq1  AGACCCTGGAATAGGTAGTAGATGAGAAAGAGCCCCAAATTCTTTAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGGAATAGGTAGTAGATGAGAAAGAGCCCCAAATTCTTTAGATC  742

seq1  TCACATTTAGAGACCACCAAGAAGGGTACAAGCCAGTAGGAAGCTCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTAGAGACCACCAAGAAGGGTACAAGCCAGTAGGAAGCTCAATA  792

seq1  AGAACACCTCAAAAATAAGGAGTCCCCCTTAATATCGTTAAACAATAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCTCAAAAATAAGGAGTCCCCCTTAATATCGTTAAACAATAGTA  842

seq1  TCCACCCTCACAATCAGTGAGAGTCACCTTTTGAGGGCCTCAAATCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTCACAATCAGTGAGAGTCACCTTTTGAGGGCCTCAAATCTCTT  892

seq1  CCTGCTCTCCCAGCTGTCAAAGCTTTTGGACTTGGTGTACAAGAATGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTCCCAGCTGTCAAAGCTTTTGGACTTGGTGTACAAGAATGTGT  942

seq1  GTGCACTCCTGATTTCCTTGATAAATGTTGGTTTACATGAGCCCATTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTCCTGATTTCCTTGATAAATGTTGGTTTACATGAGCCCATTGGG  992

seq1  ATCTATTTTGTCATATCTTCGTAGGAACACCTTATACGATACCAGCCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTGTCATATCTTCGTAGGAACACCTTATACGATACCAGCCCTG  1042

seq1  GAATTC  1056
      ||||||
seq2  GAATTC  1048