BAC Information

Click to search

BAC

Clone NameB6Ng01-021K09
Chromosome7 (Build37)
Map Location 24,621,091 - 24,758,357
singlet/doubletdoublet
Overlap geneLOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575
Upstream geneLOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222
Downstream geneV1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021K09.bB6Ng01-021K09.g
ACCDH854092DH854093
length1,2141,068
definitionDH854092|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K09, 5' end.DH854093|Mus musculus domesticus DNA, BAC clone: B6Ng01-021K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,621,091 - 24,622,343)(24,757,275 - 24,758,357)
sequence
gaattcagcattttcctcatgttataataatgtattaagaaatacaaatt
tgttttggggaatgtggttctggatctaacaccatctattgacctttatg
acacttctttcctgtatttcctgtcattcatgccagcaaagcattcatac
acacaaaataaaataagtacattttaaaacatataatacagggctggaga
gacggctcagcaattaagggcactggttgctgatccagaggaccttagtt
cactttccaccacccacatcacagctctcaactgttagtaaaaccaatta
atggcatgtggtacttactaccatacctgcaggcaaaacacaaatgagta
aaaattaaataaataaaaatttaaagaacaaaatacaaatttaataagta
tacgtcataaaaaatgtaactgaagtactttccctaaaataatccatcta
gttttgataaatttttacattcttcaacatatcgatagtatgcaaaatat
ttctggaaatgtcactcttattctgtccatatagaagaaccttgatttac
acatatatcatatatgtgggacaaaagtctgtggagcccaagcatattat
taatttataaatttctaacttcatctatttttctaaggaattaggtgctg
tacacataattgattcatctgcagtttttgtcatccacaactgaaaccat
taaaacaattacagtttaattctttgcacacaaagactttttgaaactca
gttttagaaagaacatgtttagtctgaaacttacttggtttattttgctg
tccataggaaaaataagcattcatcttacagttaaaaacctgtcctctca
catgtactcgtcacatggaaggaatttttcagatgaatcctgagccatgg
aatatacatttctttagtctaaggacatgactgacagattaggtaaactg
tggagacaaaatgaagtcaatctattatattgttggttctacaaacatca
ttaatagcagaagaagaaatgagtctagcaaaatctacaattgcgaaatc
tcactacattcatcatgatgtggatgctctcaggatggaggctgctctga
tgttacttcaaaaacagttcttgattcctgcccttggatgactttcgcga
actttttctagacgatcaagaatcttactgctatatttctagagttgtgt
cgttcatgattgaa
gaattcagtctgacatgtcaattcccacatgctgaacgacttgacatttg
ggcccaggcttttagggccatcaaggagattttaatgcacctctctaagt
aggtgttggttgcctttaatcagcaggagtaagagagggagctcagtgag
ttctgggaaggctgggtctgcaaagtgatttctaggatagtcagggataa
atagagaaaccctgcctcaaaaaaaaaaaaaaaaaaaggaagtttatctg
tctccacctcaatgtgcatggtggcacgctgcagctagcatgatggctat
ttcccttgcattctggaaaagaaactcagatctcccatgggaagcagtca
ctgtatggacagaatcatcaactcagctgatgtcttatgctgctgactct
catgcaggctgtagatgtcacatacttggctttcagcacagccaactctc
ataatagtctggagggcccggaacagccgtgtgtctatgcaacttcttta
ggtgacattccttgggcagcccacagaagacagataatttgatcctttat
tttgttatgcatgagaaaaaggaaggacaaaaatcatgttcaagctcccc
ccacaccttgcttgacaacatgatttgaagccgggaccctagcaaataag
gagcactgacatggtgccagaatacagttaccacaaatgggcagcaaaac
atgtgtttgtgagttttgcaaagataccagccttcctgccttaattattg
gcaaatgttggggtcccatgtcctcctgatttcctgccaaggaactatca
ggatcactgactactcagctacacagaaaggagcgagcctggagcactgg
actcactgctcttcaatgcctcccacagggccagccagagtacttacttc
acagctctgcagtactgtgcacaggggacagtactaaatccttttcagat
ataagtacaggaaacaattactgcacgtgtggatgtcagttttcttatct
tacagaggaactctgatcacaggattgtgggtgtttttgctaccaattca
ctttctcagattgggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24621091_24622343
seq2: B6Ng01-021K09.b_47_1260

seq1  GAATTCAGCATTTTCCTCATGTTATAATAATGTATTAAGAAATACAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTTTCCTCATGTTATAATAATGTATTAAGAAATACAAATT  50

seq1  TGTTTTGGGGAATGTGGTTCTGGATCTAACACCATCTATTGACCTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGGGAATGTGGTTCTGGATCTAACACCATCTATTGACCTTTATG  100

seq1  ACACTTCTTTCCTGTATTTCCTGTCATTCATGCCAGCAAAGCATTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTTTCCTGTATTTCCTGTCATTCATGCCAGCAAAGCATTCATAC  150

seq1  ACACAAAATAAAATAAGTACATTTTAAAACATATAATACAGGGCTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATAAAATAAGTACATTTTAAAACATATAATACAGGGCTGGAGA  200

seq1  GACGGCTCAGCAATTAAGGGCACTGGTTGCTGATCCAGAGGACCTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCTCAGCAATTAAGGGCACTGGTTGCTGATCCAGAGGACCTTAGTT  250

seq1  CACTTTCCACCACCCACATCACAGCTCTCAACTGTTAGTAAAACCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCACCACCCACATCACAGCTCTCAACTGTTAGTAAAACCAATTA  300

seq1  ATGGCATGTGGTACTTACTACCATACCTGCAGGCAAAACACAAATGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGTGGTACTTACTACCATACCTGCAGGCAAAACACAAATGAGTA  350

seq1  AAAATTAAATAAATAAAAATTTAAAGAACAAAATACAAATTTAATAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATAAATAAAAATTTAAAGAACAAAATACAAATTTAATAAGTA  400

seq1  TACGTCATAAAAAATGTAACTGAAGTACTTTCCCTAAAATAATCCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCATAAAAAATGTAACTGAAGTACTTTCCCTAAAATAATCCATCTA  450

seq1  GTTTTGATAAATTTTTACATTCTTCAACATATCGATAGTATGCAAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATAAATTTTTACATTCTTCAACATATCGATAGTATGCAAAATAT  500

seq1  TTCTGGAAATGTCACTCTTATTCTGTCCATATAGAAGAACCTTGATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAATGTCACTCTTATTCTGTCCATATAGAAGAACCTTGATTTAC  550

seq1  ACATATATCATATATGTGGGACAAAAGTCTGTGGAGCCCAAGCATATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATCATATATGTGGGACAAAAGTCTGTGGAGCCCAAGCATATTAT  600

seq1  TAATTTATAAATTTCTAACTTCATCTATTTTTCTAAGGAATTAGGTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATAAATTTCTAACTTCATCTATTTTTCTAAGGAATTAGGTGCTG  650

seq1  TACACATAATTGATTCATCTGCAGTTTTTGTCATCCACAACTGAAACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAATTGATTCATCTGCAGTTTTTGTCATCCACAACTGAAACCAT  700

seq1  TAAAACAATTACAGTTTAATTCTTTGCACACAAAGACTTTTTGAAACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATTACAGTTTAATTCTTTGCACACAAAGACTTTTTGAAACTCA  750

seq1  GTTTTAGAAAGAACATGTTTAGTCTGAAACTTACTTGGTTTATTTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAAAGAACATGTTTAGTCTGAAACTTACTTGGTTTATTTTGCTG  800

seq1  TCCATAGGAAAAATAAGCATTCATCTTACAGTTAAAAACCTGTCCTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGAAAAATAAGCATTCATCTTACAGTTAAAAACCTGTCCTCTCA  850

seq1  CATGTACTCGTCACATGGAAGGAATTTTTCAGATGAATCCTGAGCCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACTCGTCACATGGAAGGAATTTTTCAGATGAATCCTGAGCCATGG  900

seq1  AATATACATTTCTTTAGTCTAAGGACATGACTGACAAGATTAGGTAAACT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATATACATTTCTTTAGTCTAAGGACATGACTGAC-AGATTAGGTAAACT  949

seq1  GTGGAGACAAAAATGAAGTCAATCTAATTATTAATGTTGGTTCTACAAAA  1000
      |||||||| |||||||||||||||| |||| || |||||||||||| |||
seq2  GTGGAGAC-AAAATGAAGTCAATCT-ATTA-TATTGTTGGTTCTAC-AAA  995

seq1  CACCATTAATAGCAGAAGAAAGAAATGAAGTCTAAGCAAAAATCTACAAT  1050
      || ||||||||||||||| |||||||| ||||| ||| ||||||||||||
seq2  CATCATTAATAGCAGAAG-AAGAAATG-AGTCT-AGC-AAAATCTACAAT  1041

seq1  TGCAGAAATCTCACCTACATTCATCAATGATGGTGATGCTCACAGGAATG  1100
      ||| ||||||||| ||||||||||| ||||||  ||||||| |||| |||
seq2  TGC-GAAATCTCA-CTACATTCATC-ATGATGTGGATGCTCTCAGG-ATG  1087

seq1  AAGGCCTGCTTCTGAGTGTTACTTCAGAAACACAGTTCTGAATTCCATGC  1150
       ||| |||| ||||| |||||||||  ||| ||||||||  ||||| |||
seq2  GAGG-CTGC-TCTGA-TGTTACTTC--AAAAACAGTTCTTGATTCC-TGC  1131

seq1  CCTTTGATGAACTTTTCTGCG-GAACTATTTCCTAAGACAGATCCAAAGA  1199
      |||| |||| |||||    || ||||| ||||   |||| ||||  ||| 
seq2  CCTTGGATG-ACTTT----CGCGAACTTTTTC--TAGAC-GATC--AAG-  1170

seq1  AATCTTTACCTGCCCTATATTTTCAATGAAGTTGTGTGCTGATCAATGAT  1249
      ||||||   |||  ||||||||    |  ||||||||   | || |||||
seq2  AATCTT--ACTG--CTATATTT---CTAGAGTTGTGT--CGTTC-ATGAT  1210

seq1  TGAA  1253
      ||||
seq2  TGAA  1214

seq1: chr7_24757275_24758357
seq2: B6Ng01-021K09.g_66_1133 (reverse)

seq1  ATGCCCAAATCTGAGAAAAGTGAATTGGTAGCAAAAACAACCACATATTC  50
      |||||| |||||||| ||||||||||||||||||||||| ||||| ||  
seq2  ATGCCC-AATCTGAG-AAAGTGAATTGGTAGCAAAAACACCCACA-AT--  45

seq1  CCTGTGAATCAGAAGTCTCTTCTGTTACAGATAAGAAAACTGGACATCCA  100
      |||||| ||||| ||| || |||||   ||||||||||||| ||||||||
seq2  CCTGTG-ATCAG-AGT-TCCTCTGT--AAGATAAGAAAACT-GACATCCA  89

seq1  CACGTGCAGTAATTGTTTCCTGTAACTTATATCTGGAAAAGGATTTAGTA  150
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  CACGTGCAGTAATTGTTTCCTGT-ACTTATATCT-GAAAAGGATTTAGTA  137

seq1  CTGTCCCCTGTGCACAGTACTGCAGAGCTGTGAAGTAAGTACTTCTGGCT  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTCCCCTGTGCACAGTACTGCAGAGCTGTGAAGTAAGTAC-TCTGGCT  186

seq1  GGCCCTGTGGGAGGCATTGAAGAGCAGTGAGTCCAGTGCTCCAGGCTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTGGGAGGCATTGAAGAGCAGTGAGTCCAGTGCTCCAGGCTCGC  236

seq1  TCCTTTCTGTGTAGCTGAGTAGTCAGTGATCCCTGATAGTTCCTTGGCAG  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCTTTCTGTGTAGCTGAGTAGTCAGTGAT-CCTGATAGTTCCTTGGCAG  285

seq1  GAAATCAGGAGGACATGGGACCCCAACATTTGCCAATAATTAAGGCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGGAGGACATGGGACCCCAACATTTGCCAATAATTAAGGCAGGA  335

seq1  AGGCTGGTATCTTTGCAAAACTCACAAACACATGTTTTGCTGCCCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTATCTTTGCAAAACTCACAAACACATGTTTTGCTGCCCATTTG  385

seq1  TGGTAACTGTATTCTGGCACCATGTCAGTGCTCCTTATTTGCTAGGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTGTATTCTGGCACCATGTCAGTGCTCCTTATTTGCTAGGGTCC  435

seq1  CGGCTTCAAATCATGTTGTCAAGCAAGGTGTGGGGGGAGCTTGAACATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCAAATCATGTTGTCAAGCAAGGTGTGGGGGGAGCTTGAACATGA  485

seq1  TTTTTGTCCTTCCTTTTTCTCATGCATAACAAAATAAAGGATCAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCCTTCCTTTTTCTCATGCATAACAAAATAAAGGATCAAATTAT  535

seq1  CTGTCTTCTGTGGGCTGCCCAAGGAATGTCACCTAAAGAAGTTGCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTGTGGGCTGCCCAAGGAATGTCACCTAAAGAAGTTGCATAGA  585

seq1  CACACGGCTGTTCCGGGCCCTCCAGACTATTATGAGAGTTGGCTGTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCTGTTCCGGGCCCTCCAGACTATTATGAGAGTTGGCTGTGCTG  635

seq1  AAAGCCAAGTATGTGACATCTACAGCCTGCATGAGAGTCAGCAGCATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAGTATGTGACATCTACAGCCTGCATGAGAGTCAGCAGCATAAG  685

seq1  ACATCAGCTGAGTTGATGATTCTGTCCATACAGTGACTGCTTCCCATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCTGAGTTGATGATTCTGTCCATACAGTGACTGCTTCCCATGGG  735

seq1  AGATCTGAGTTTCTTTTCCAGAATGCAAGGGAAATAGCCATCATGCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAGTTTCTTTTCCAGAATGCAAGGGAAATAGCCATCATGCTAGC  785

seq1  TGCAGCGTGCCACCATGCACATTGAGGTGGAGACAGATAAACTTCCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCGTGCCACCATGCACATTGAGGTGGAGACAGATAAACTTCCTTTT  835

seq1  TTTTTTTTTTTTTTTGAGGCAGGGTTTCTCTATTTATCCCTGACTATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGAGGCAGGGTTTCTCTATTTATCCCTGACTATCCT  885

seq1  AGAAATCACTTTGCAGACCCAGCCTTCCCAGAACTCACTGAGCTCCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTTTGCAGACCCAGCCTTCCCAGAACTCACTGAGCTCCCTCT  935

seq1  CTTACTCCTGCTGATTAAAGGCAACCAACACCTACTTAGAGAGGTGCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCCTGCTGATTAAAGGCAACCAACACCTACTTAGAGAGGTGCATT  985

seq1  AAAATCTCCTTGATGGCCCTAAAAGCCTGGGCCCAAATGTCAAGTCGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCCTTGATGGCCCTAAAAGCCTGGGCCCAAATGTCAAGTCGTTC  1035

seq1  AGCATGTGGGAATTGACATGTCAGACTGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  AGCATGTGGGAATTGACATGTCAGACTGAATTC  1068