BAC Information

Click to search

BAC

Clone NameB6Ng01-022D09
Chromosome7 (Build37)
Map Location 9,609,966 - 9,752,706
singlet/doubletdoublet
Overlap geneLOC665598, LOC100042810, LOC665593, EG665582, EG434113
Upstream geneLOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803
Downstream geneEG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022D09.bB6Ng01-022D09.g
ACCDH854493DH854494
length1,0361,039
definitionDH854493|Mus musculus domesticus DNA, BAC clone: B6Ng01-022D09, 5' end.DH854494|Mus musculus domesticus DNA, BAC clone: B6Ng01-022D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,751,663 - 9,752,706)(9,609,966 - 9,611,014)
sequence
gaattctcattgacatataacttgattttgtccaaggaattccttttgca
gtttgacattaatagtttttaggagcatcttattatgcttattcacatgc
aaatatgaaacaaataattggcatcaataattccatatgttctgattata
gaatttacaatttcaattatagtttcaaaaataaagtattcttagtacta
aaccgggaataaatatcactccattgtctatcactaactcatgcttcact
cactcctattcatataagctatgaggtaggattcctggtcttttcaccta
gcaccatttcatatgactagttaccataatgtgatatgcaaattttgtcc
cattatgatggcttagtttttgtttaatctcgttttattttagtattctc
ctatagaatcctgtcattttctaatgagtgacagaaagtggatctgatgg
aaaaggcagctgggaaggaaatcggaatattaactatgatatatttgcca
gcaaaactgacagttggtcacatcccaatagaagggaggtaaattgtaat
taggatacattatgtgaggataacaagtaattgtccaaaaataaaacaat
cacaattacaaaaaaattctctgttttcagagaatgatctttctgttgtg
tgttgtgttcttttgttacgtgtttttgtcaagtattattccatacatat
ctatcaaatgtattgttcctgaattacctttttccctcttattaaacatt
ataatgttttcctccatttttttaataaagaaaagttttcctcttgtata
tgaatgtgtcttcctaccctcggtaggcaaattaggaatgtctcaaaaaa
taaaccagccttgttgtccttgattaatttagagaattttaagaaagtgt
tctatcataatggaaaattatttgttgcttttgtctggttactgcattgc
tgtatttgaggtgcgtaatagccattctttgttgttgttctagtgcactt
tatagctccttgactttcatctttacataaagcatg
gaattcacataaaaataaatttttagaaaaggttttctttcagcaaatga
ttgaaataaaaataagaaagtgaggatagatataagggaaaacgccaaga
atattggcaactaattataagtgattattagtacagaaaccaaagtttgc
tgcaaaaagactattatgcactaataagtcctattttctctaccttaact
aattaagtgaatttcacaaaaagtatcaataacacaatgggtctcataac
acatgtatttctatgttgctcaataatttcaaaatgaagacatgttctga
attacagttttgtcaatatctgtggtttttcctttttttaacttctgatc
aagcactgaaaaacagagatgggaatgttctctgtggatgaggtcaatac
caaatcttatttatgggagaaatactgtcatgaaattgtaatctgtttac
tatttattcaatttcccaattccattttatctcacaataaaagccttttc
tttcaatctttagaggacagaggcagaagcatccagtacagtatagtgtt
tctattgagtacaaatgatcgtgtatttacatttgtccataataattgct
gtactcttttacagaaaaacaactaaaacccacaaatatgctttggcatt
ggcattttcaatggatgaaatcaacagaaatcctgatcttttaccaaata
tgtctttgattataaaatataatttggaccgttgtgatggaaaaactatg
acaaatacaggcgattttcttgatcagaaaaaatataagcgtatccctaa
ttatttctgtaatgaagagactatgtgttcatttcttacaggacccgata
tgaccacatctttatattttcagatgttcctggacattttcttatctcac
atgtgagttatcataggcaaggattttagcatcacgtctctttgggggat
tgacagatataagaaagttaatggatgagatagatgtatgctatgtcatc
tatgtagtccagtgacttactatttagaagaatgatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9751663_9752706
seq2: B6Ng01-022D09.b_45_1080 (reverse)

seq1  CATGCTTTTATGT-AAGATGAAGGTCAAGGGAGCCTATAAAGTGCACTAG  49
      ||||| ||||||| |||||||| ||||| |||| ||||||||||||||||
seq2  CATGC-TTTATGTAAAGATGAAAGTCAA-GGAG-CTATAAAGTGCACTAG  47

seq1  AACAACAGACAAAGAAATGGCTATTAACGCACCTCAAATACAGCAAATGC  99
      ||||||| |||||| |||||||||| |||||||||||||||||| |||||
seq2  AACAACA-ACAAAG-AATGGCTATT-ACGCACCTCAAATACAGC-AATGC  93

seq1  AGTAACCAGACAAAAGCAACAAATAATTTTCCATTATGATAGAACACTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTAACCAGACAAAAGCAACAAATAATTTTCCATTATGATAGAACAC-TT  142

seq1  TCTTAAAATTCTCTAAATTAAATCAAGGACAACAAGGCTGGTTTATTTTT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTTAAAATTCTCTAAATT-AATCAAGGACAACAAGGCTGGTTTATTTTT  191

seq1  TGAGACATTCCTAATTTGCCTACCGAGGGTAGGAAGACACATTCATATAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATTCCTAATTTGCCTACCGAGGGTAGGAAGACACATTCATATAC  241

seq1  AAGAGGAAAACTTTTCTTTATTAAAAAAATGGAGGAAAACATTATAATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAACTTTTCTTTATTAAAAAAATGGAGGAAAACATTATAATGT  291

seq1  TTAATAAGAGGGAAAAAGGTAATTCAGGAACAATACATTTGATAGATATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGAGGGAAAAAGGTAATTCAGGAACAATACATTTGATAGATATG  341

seq1  TATGGAATAATACTTGACAAAAACACGTAACAAAAGAACACAACACACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATAATACTTGACAAAAACACGTAACAAAAGAACACAACACACAA  391

seq1  CAGAAAGATCATTCTCTGAAAACAGAGAATTTTTTTGTAATTGTGATTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATCATTCTCTGAAAACAGAGAATTTTTTTGTAATTGTGATTGT  441

seq1  TTTATTTTTGGACAATTACTTGTTATCCTCACATAATGTATCCTAATTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGGACAATTACTTGTTATCCTCACATAATGTATCCTAATTAC  491

seq1  AATTTACCTCCCTTCTATTGGGATGTGACCAACTGTCAGTTTTGCTGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCTCCCTTCTATTGGGATGTGACCAACTGTCAGTTTTGCTGGCA  541

seq1  AATATATCATAGTTAATATTCCGATTTCCTTCCCAGCTGCCTTTTCCATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCATAGTTAATATTCCGATTTCCTTCCCAGCTGCCTTTTCCATC  591

seq1  AGATCCACTTTCTGTCACTCATTAGAAAATGACAGGATTCTATAGGAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACTTTCTGTCACTCATTAGAAAATGACAGGATTCTATAGGAGAA  641

seq1  TACTAAAATAAAACGAGATTAAACAAAAACTAAGCCATCATAATGGGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAATAAAACGAGATTAAACAAAAACTAAGCCATCATAATGGGACA  691

seq1  AAATTTGCATATCACATTATGGTAACTAGTCATATGAAATGGTGCTAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCATATCACATTATGGTAACTAGTCATATGAAATGGTGCTAGGT  741

seq1  GAAAAGACCAGGAATCCTACCTCATAGCTTATATGAATAGGAGTGAGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACCAGGAATCCTACCTCATAGCTTATATGAATAGGAGTGAGTGA  791

seq1  AGCATGAGTTAGTGATAGACAATGGAGTGATATTTATTCCCGGTTTAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAGTTAGTGATAGACAATGGAGTGATATTTATTCCCGGTTTAGTA  841

seq1  CTAAGAATACTTTATTTTTGAAACTATAATTGAAATTGTAAATTCTATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATACTTTATTTTTGAAACTATAATTGAAATTGTAAATTCTATAA  891

seq1  TCAGAACATATGGAATTATTGATGCCAATTATTTGTTTCATATTTGCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACATATGGAATTATTGATGCCAATTATTTGTTTCATATTTGCATG  941

seq1  TGAATAAGCATAATAAGATGCTCCTAAAAACTATTAATGTCAAACTGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGCATAATAAGATGCTCCTAAAAACTATTAATGTCAAACTGCAA  991

seq1  AAGGAATTCCTTGGACAAAATCAAGTTATATGTCAATGAGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTCCTTGGACAAAATCAAGTTATATGTCAATGAGAATTC  1036

seq1: chr7_9609966_9611014
seq2: B6Ng01-022D09.g_71_1109

seq1  GAATTCACATAAAAATAAATTTTTAGAAAAGGTTTTCTTTCAGCAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAAAAATAAATTTTTAGAAAAGGTTTTCTTTCAGCAAATGA  50

seq1  TTGAAATAAAAATAAGAAAGTGAGGATAGATATAAGGGAAAACGCCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAAAATAAGAAAGTGAGGATAGATATAAGGGAAAACGCCAAGA  100

seq1  ATATTGGCAACTAATTATAAGTGATTATTAGTACAGAAACCAAAGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCAACTAATTATAAGTGATTATTAGTACAGAAACCAAAGTTTGC  150

seq1  TGCAAAAAGACTATTATGCACTAATAAGTCCTATTTTCTCTACCTTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAGACTATTATGCACTAATAAGTCCTATTTTCTCTACCTTAACT  200

seq1  AATTAAGTGAATTTCACAAAAAGTATCAATAACACAATGGGTCTCATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGAATTTCACAAAAAGTATCAATAACACAATGGGTCTCATAAC  250

seq1  ACATGTATTTCTATGTTGCTCAATAATTTCAAAATGAAGACATGTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATTTCTATGTTGCTCAATAATTTCAAAATGAAGACATGTTCTGA  300

seq1  ATTACAGTTTTGTCAATATCTGTGGTTTTTCCTTTTTTTAACTTCTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTTTGTCAATATCTGTGGTTTTTCCTTTTTTTAACTTCTGATC  350

seq1  AAGCACTGAAAAACAGAGATGGGAATGTTCTCTGTGGATGAGGTCAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGAAAAACAGAGATGGGAATGTTCTCTGTGGATGAGGTCAATAC  400

seq1  CAAATCTTATTTATGGGAGAAATACTGTCATGAAATTGTAATCTGTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTATTTATGGGAGAAATACTGTCATGAAATTGTAATCTGTTTAC  450

seq1  TATTTATTCAATTTCCCAATTCCATTTTATCTCACAATAAAAGCCTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTCAATTTCCCAATTCCATTTTATCTCACAATAAAAGCCTTTTC  500

seq1  TTTCAATCTTTAGAGGACAGAGGCAGAAGCATCCAGTACAGTATAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCTTTAGAGGACAGAGGCAGAAGCATCCAGTACAGTATAGTGTT  550

seq1  TCTATTGAGTACAAATGATCGTGTATTTACATTTGTCCATAATAATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGAGTACAAATGATCGTGTATTTACATTTGTCCATAATAATTGCT  600

seq1  GTACTCTTTTACAGAAAAACAACTAAAACCCACAAATATGCTTTGGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTTTACAGAAAAACAACTAAAACCCACAAATATGCTTTGGCATT  650

seq1  GGCATTTTCAATGGATGAAATCAACAGAAATCCTGATCTTTTACCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCAATGGATGAAATCAACAGAAATCCTGATCTTTTACCAAATA  700

seq1  TGTCTTTGATTATAAAATATAATTTGGACCGTTGTGATGGAAAAACTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGATTATAAAATATAATTTGGACCGTTGTGATGGAAAAACTATG  750

seq1  ACAAATACAGGCGATTTTCTTGATCAGAAAAAATATAAGCGTATCCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACAGGCGATTTTCTTGATCAGAAAAAATATAAGCGTATCCCTAA  800

seq1  TTATTTCTGTAATGAAGAGACTATGTGTTCATTTCTTACAGGACCCGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGTAATGAAGAGACTATGTGTTCATTTCTTACAGGACCCGATA  850

seq1  TGACCACATCTTTATATTTTCAGATGTTCCTGGACATTTTCTTATCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGACCACATCTTTATATTTTCAGATGTTCCTGGACATTTTCTTATCT-CA  899

seq1  CATGTGAGTTATCATAGGCCAAGGATTTTTAGCATCACGTCTCTTTGGGG  950
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  CATGTGAGTTATCATAGG-CAAGGA-TTTTAGCATCACGTCTCTTTGGGG  947

seq1  GATTTGACAGATATTAAGAAAGTTAATGGATGAGATTAGATGTATGCTTA  1000
      || |||||||||| ||||||||||||||||||||| ||||||||||| ||
seq2  GA-TTGACAGATA-TAAGAAAGTTAATGGATGAGA-TAGATGTATGC-TA  993

seq1  TGTCAATCTATGTAGTTCCAGTGTACTTACTATTTAGAGAGATGATAGG  1049
      |||| |||||||||| ||||||| ||||||||||||||   ||||||||
seq2  TGTC-ATCTATGTAG-TCCAGTG-ACTTACTATTTAGAAGAATGATAGG  1039