BAC Information

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BAC

Clone NameB6Ng01-022O23
Chromosome9 (Build37)7 (Build37)
Map Location 32,614,336 - 32,614,73950,444,854 - 50,445,264
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1
Downstream geneLOC100041426, LOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022O23.bB6Ng01-022O23.g
ACCDH855001DH855002
length938919
definitionDH855001|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O23, 5' end.DH855002|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,614,336 - 32,614,739)(50,444,854 - 50,445,264)
sequence
gaattctttgttttgccctgtaccaccttttttttttcttttttctttgc
ttttcttttttttttttagatattttctttatttacatttcaaatgctat
cctgaaagttccctctaccctccccctgccctgctcccctacctacccac
tcccatttcttagccctggcattcccctgtactggggcatataaagtttc
taagaccaaagtctctcttcccaatgatgaccgactagaccatcttctgc
tatgtatgcagctagagacatgagctctgggggaactggttagttcatat
tgttgttccacctatagggttgcagaacccttcagctccttgggtatttt
ctctagctcctccactggggaccctgtgttccattctatagatgactgtg
agcatccacttctctatttgccaggcaatggcatagcctcatacaagata
gcccataaacttagaatacccaagatacaaaacacaagaaaatcaagaag
aaggaagatcaacatgtggattcttcattccttaaaatagggaacaaaat
actcatgaaagtagttacagagacaaagtttggagctgagacaaaaggat
ggactatccgtgtgaagagccggtacgtgctgcgagcaatcgtgtgctag
ccgccagtaatctctgaggagagccctgtgtgccgcgagcaatcgcgtgc
gtgccgccagtaatctctgaggagagccctgtgtgccacgagcaatcacc
atttataagatggtgcgggcctccgctgtgcctaactagtaaacaagcct
tgtaagcaggtgcgagagtgaattcactcctagtcactcccattctcggg
gtgtaatagtggggtgatggtaagcaacgaatcaggagctgtcccaccat
atcagtgctgaaatgtcacgctgcgggttataaaagca
gaattctctgatgttttataagagttgacttctcagtaaaggatttgtca
cattccttacatttataaggcttctctccactatgcaaattctgatggct
tttaagggatgaccagtaatgaaatgactttccacattctttgcatttat
aaggtttctccccagtatgaagtctttgatgtgttttaagatttgtacat
tggttaaaggatttgccacaaatgttgcacttgtagggtttctctccagt
atgaattatctgatgtgttctaagacttgacttcagagtaaaggatttgt
cacattccttacatttataaggcttctctccaggatgcaaattctgatgt
attttaagggatgacatgtaaggaaatgcctttccacattccttgcactt
gtaaggtttctccccagtatgaagtgtttgatgtgttttaagatttgtac
aactgttaaaggatttgccacaaatgttgcacttatagggtttctttcca
gtatgaattcttttatgcgttgtaagtgttgacttctcggtaaaagattt
gtcacattcctcacatttgtaaggtttctttccagtatgcaaattcagat
gttttttaaagggatgaggactgagtaaatgcctttccacattccttgca
cttgtaaggttttttctcctgtatgaagtctttggtgtgttttaagattt
gcacattgtctaaaggatctgtcacaaacatttgcacgtgtagggtttct
ctccagtatgatttctctgatgttttataagagttgactttatagtaaag
gatttgtcacattccttacatttgtatggcttcgctccaggatgcaaatt
ctgatggactttagggatgacaagtaaggaaacgacattccacattctct
gcatttgtaaggcttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32614336_32614739
seq2: B6Ng01-022O23.b_72_486

seq1  TTTTTTTTCTTTTTTC--------------TTTAAATTAGATATTTTCTT  36
      ||||||||||||||||              |||   ||||||||||||||
seq2  TTTTTTTTCTTTTTTCTTTGCTTTTCTTTTTTTTTTTTAGATATTTTCTT  50

seq1  TATTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTCCACCTGC  86
      ||||||||||||||||||||||| ||||||||||| |||||||| |||||
seq2  TATTTACATTTCAAATGCTATCCTGAAAGTTCCCTCTACCCTCCCCCTGC  100

seq1  CCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTG  136
      |||||||||||||| ||||||||||| ||||| |||||||  ||||||||
seq2  CCTGCTCCCCTACCTACCCACTCCCATTTCTTAGCCCTGGCATTCCCCTG  150

seq1  TACTGGGGCATACAAAGTTTGCAAGACCAAGGGGGCCTCTCTTCCCAATG  186
      |||||||||||| |||||||  ||||||||    | ||||||||||||||
seq2  TACTGGGGCATATAAAGTTTCTAAGACCAA---AGTCTCTCTTCCCAATG  197

seq1  ATGGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCT  236
      ||| |||||||| |||||||||||||  |||||||||||||||| |||||
seq2  ATGACCGACTAGACCATCTTCTGCTATGTATGCAGCTAGAGACATGAGCT  247

seq1  CTACACGTTCTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA  286
      ||    |  |||||||||||||| ||||||||||||||||||||||||||
seq2  CTGGGGGAACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGA  297

seq1  CCCCTTCAGCTCCTTGGGTTCTTTCTCTAGCTCCTCCATTGGGGGCCCTG  336
       ||||||||||||||||||  ||||||||||||||||| ||||| |||||
seq2  ACCCTTCAGCTCCTTGGGTATTTTCTCTAGCTCCTCCACTGGGGACCCTG  347

seq1  TATTCCATCTTATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGC  386
      | ||||||  ||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTCCATTCTATAGATGACTGTGAGCATCCACTTCTCTATTTGCCAGGC  397

seq1  ACTCGCATAGCCTCATAC  404
      | | ||||||||||||||
seq2  AATGGCATAGCCTCATAC  415

seq1: chr7_50444854_50445264
seq2: B6Ng01-022O23.g_218_322 (reverse)

seq1  ATACTGGAGAGAAACCCTACAAACCCAGCTATCTTCGAATGCATGAAAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACACATACTGGAGAGAAACCTTACCAATGTAATGAATGTGATAAAGCCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTACAGCTCAGGTATCTTAGATTACATGAAAGAAGACATAGTGGAGAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AACCCTATGAATGTAATCAATGTGGTAAAGCCTTTTTACATCTCAACTAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTTAGAATTCATGAAAGAACACATACTGGAGAGAAACCTTACCAATGTAA  250
                            |||||||||||||||| ||| | || ||
seq2  ----------------------ATACTGGAGAGAAACCCTACAAGTGCAA  28

seq1  TCAATGTGGTAAAGCCTTTACACAAAGGAGTCATCTTCAAAGACATAAAG  300
          ||||| ||| ||||||  ||| | |   ||||| ||| |||| || 
seq2  CATTTGTGGCAAATCCTTTAACCAATGTACAAATCTTAAAACACATCAAA  78

seq1  TAGTACATACTGGAGTGAGACCCTACATATGTAATCAGTGTAATAAAGCC  350
       | | |||||||| | || ||| || |                       
seq2  GACTTCATACTGGGGAGAAACCTTATA-----------------------  105

seq1  TACCCACAGCAGAATTATCTCCGAAAACATGAAAGAACACATACTGGAGA  400
                                                        
seq2  --------------------------------------------------  105

seq1  GAAACCTTATA  411
                 
seq2  -----------  105