BAC Information

Click to search

BAC

Clone NameB6Ng01-023A09
Chromosome7 (Build37)
Map Location 6,815,761 - 6,946,039
singlet/doubletdoublet
Overlap geneUsp29
Upstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023A09.bB6Ng01-023A09.g
ACCDH855063DH855064
length1261,080
definitionDH855063|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A09, 5' end.DH855064|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,815,761 - 6,815,886)(6,944,942 - 6,946,039)
sequence
gaattcaggtcctcctagtatgcccctagccaccactgagtctcaccttt
acattttaatgagtgtcatgggggtgagggaggaagcttgacttctctga
ggagaagggaggtgaggaatgggggg
gaattcactttgaagcccgtgtcttgtcatgtacccaatggacaccctgg
gctgtgcaaagtagactggcctcaagcagtacatctttgtgagatagttt
tacataatgtgcattcaaatgctgatttctgtgcaaggacacctaattgc
tattggatgttggcagtgtcataattgttgaatcatctcctgtctcaatg
ttgtgtaaaaattgttctccatcacctctgattggctaaatgtggagagc
ttttgaggttgcttctaggaaggtcaacctgatcaacccctagacacagt
gacaatgggactttgtttattgcctgtttgattactttgattattgtctg
gtttgttccttatttatgctttgttttttccttaactattttgtttatgc
cttaggactggccatatactttgtatgtacctagagtggtataaaagcag
aatggaaaaaaataaacaggcctccagcttcagaactggctagggtcatg
ttacagtgttgtccagttgtctttttcttatcaatccttgttcccttcct
gaagaacccattgactgactgatctggctgggtcagttaataaagatcga
aatagccaatagctgggcaggtgagataaaataggattttccttcccagt
gaggggtcaaaggtggagatagagatcaagaagggagtcatgagggagtc
gtcatgaggagatgagggagcaggaggagccagggaaagactaagatggc
aggtaacaagacatgggactggaaaataggccaggccatcatagtcaggt
cagaatagatgaatttctttccagctgtaattcttgagcttctgtataat
ataatctctgtgtcattatgtggagtacacacaagaaagaccataattaa
cttttacatgacacagtcctcctgcctcagccacttgtaggacaccccac
tacacttggttctttctcttcttttctcggagaaagatctcactattagc
tctagctgactcctagaacaccttgtttctgttcttgagtgttagtagaa
gcttgttctgaatgaactagtgagaacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6815761_6815886
seq2: B6Ng01-023A09.b_34_159

seq1  GAATTCAGGTCCTCCTAGTATGCCCCTAGCCACCACTGAGTCTCACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCTCCTAGTATGCCCCTAGCCACCACTGAGTCTCACCTTT  50

seq1  ACATTTTAATGAGTGTCATGGGGGTGAGGGAGGAAGCTTGACTTCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAATGAGTGTCATGGGGGTGAGGGAGGAAGCTTGACTTCTCTGA  100

seq1  GGAGAAGGGAGGTGAGGAATGGGGGG  126
      ||||||||||||||||||||||||||
seq2  GGAGAAGGGAGGTGAGGAATGGGGGG  126

seq1: chr7_6944942_6946039
seq2: B6Ng01-023A09.g_68_1147 (reverse)

seq1  GGGGTTTCCTCACTAGGTTCTATCAGTACAAGCCTCTACTAACACTCAGG  50
      ||||||  ||||||| ||||  |||| |||||| ||||||||||||||  
seq2  GGGGTT--CTCACTA-GTTCATTCAGAACAAGCTTCTACTAACACTCA-A  46

seq1  GAACAGAAAC-AGGTGTGTCTATGAGTTCAGCTAGGGCTACATAGTGAGA  99
      |||||||||| |||||| |||| ||| |||||||| |||| |||||||||
seq2  GAACAGAAACAAGGTGT-TCTAGGAG-TCAGCTAGAGCTA-ATAGTGAGA  93

seq1  TCCTTTCTCCAGAGAAAAAGAAGAAGAAAAAGAAACCAAGTGTAGTGGGG  149
      | |||||||| |||||    ||||||| |||| |||||||||||||||||
seq2  T-CTTTCTCC-GAGAA----AAGAAGAGAAAG-AACCAAGTGTAGTGGGG  136

seq1  TGTGCCTACAAGTGGCTGAGGCAGGAGGACTGTGTCATGTAAAAGTTTAA  199
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGT-CCTACAAGTGGCTGAGGCAGGAGGACTGTGTCATGTAAAAG-TTAA  184

seq1  TTATGGTCTTTCTTGTGTGTACTCCCACATAATGACACAGAGATTATATT  249
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  TTATGGTCTTTCTTGTGTGTACT-CCACATAATGACACAGAGATTATA-T  232

seq1  TATACAGAAGCTTCAAGAATTACAGCTGGAAAGAAATTCATCTATTCTGA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAAGC-TCAAGAATTACAGCTGGAAAGAAATTCATCTATTCTGA  281

seq1  CCTGACTATGATGGCCTGGCCTATTTTCCAGTCCCATGTCTTGTTACCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTATGATGGCCTGGCCTATTTTCCAGTCCCATGTCTTGTTACCTG  331

seq1  CCATCTTAGTCTTTCCCTGGCTCCTCCTGCTCCCTCATCTCCTCATGACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTAGTCTTTCCCTGGCTCCTCCTGCTCCCTCATCTCCTCATGACG  381

seq1  ACTCCCTCATGACTCCCTTCTTGATCTCTATCTCCACCTTTGACCCCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCATGACTCCCTTCTTGATCTCTATCTCCACCTTTGACCCCTCA  431

seq1  CTGGGAAGGAAAATCCTATTTTATCTCACCTGCCCAGCTATTGGCTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGGAAAATCCTATTTTATCTCACCTGCCCAGCTATTGGCTATTT  481

seq1  CGATCTTTATTAACTGACCCAGCCAGATCAGTCAGTCAATGGGTTCTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTTTATTAACTGACCCAGCCAGATCAGTCAGTCAATGGGTTCTTCA  531

seq1  GGAAGGGAACAAGGATTGATAAGAAAAAGACAACTGGACAACACTGTAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAACAAGGATTGATAAGAAAAAGACAACTGGACAACACTGTAAC  581

seq1  ATGACCCTAGCCAGTTCTGAAGCTGGAGGCCTGTTTATTTTTTTCCATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTAGCCAGTTCTGAAGCTGGAGGCCTGTTTATTTTTTTCCATTC  631

seq1  TGCTTTTATACCACTCTAGGTACATACAAAGTATATGGCCAGTCCTAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATACCACTCTAGGTACATACAAAGTATATGGCCAGTCCTAAGG  681

seq1  CATAAACAAAATAGTTAAGGAAAAAACAAAGCATAAATAAGGAACAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAAAATAGTTAAGGAAAAAACAAAGCATAAATAAGGAACAAACC  731

seq1  AGACAATAATCAAAGTAATCAAACAGGCAATAAACAAAGTCCCATTGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATAATCAAAGTAATCAAACAGGCAATAAACAAAGTCCCATTGTCA  781

seq1  CTGTGTCTAGGGGTTGATCAGGTTGACCTTCCTAGAAGCAACCTCAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTAGGGGTTGATCAGGTTGACCTTCCTAGAAGCAACCTCAAAAG  831

seq1  CTCTCCACATTTAGCCAATCAGAGGTGATGGAGAACAATTTTTACACAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACATTTAGCCAATCAGAGGTGATGGAGAACAATTTTTACACAAC  881

seq1  ATTGAGACAGGAGATGATTCAACAATTATGACACTGCCAACATCCAATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACAGGAGATGATTCAACAATTATGACACTGCCAACATCCAATAG  931

seq1  CAATTAGGTGTCCTTGCACAGAAATCAGCATTTGAATGCACATTATGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGGTGTCCTTGCACAGAAATCAGCATTTGAATGCACATTATGTAA  981

seq1  AACTATCTCACAAAGATGTACTGCTTGAGGCCAGTCTACTTTGCACAGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTCACAAAGATGTACTGCTTGAGGCCAGTCTACTTTGCACAGCC  1031

seq1  CAGGGTGTCCATTGGGTACATGACAAGACACGGGCTTCATAGTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGGTGTCCATTGGGTACATGACAAGACACGGGCTTCAAAGTGAATTC  1080