BAC Information

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BAC

Clone NameB6Ng01-023E18
Chromosome7 (Build37)
Map Location 57,514,621 - 57,515,764
singlet/doubletsinglet
Overlap geneNell1
Upstream gene5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023E18.bB6Ng01-023E18.g
ACCDH855257DH855258
length1,0101,132
definitionDH855257|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E18, 5' end.DH855258|Mus musculus domesticus DNA, BAC clone: B6Ng01-023E18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagcttttaggtcaggcatggtgattccaccagaggttctt
tttatcctttgagaagagttttttgctatcctaggttttttgttatttcc
agatgaatttgctattttgctccttctaattcgttgaagatttgagttgg
aattttgatggggattgcattgaatctgtagattgcttttggcaagatag
ccattttacaatgttgatcctgccaatccatgagctgggagatttttcca
tctctgagatctctttatttctttcttcagagactttgaagtatttatca
tacagatcttttactcgttagttagagtcacgccgaaatatttatatatt
tgtgacttatgagaaggttttgtttcctatattctttcccagcggtttat
tctttttgga
gaattcagaacacaaaagcaactcccgcctacacagcatttccagagata
agcatcaccctcctcctccagacatgtcctagcagagcagagagcataag
tggaaggaaagccctcagctccgcagcatatcctctcttgttcctctata
cctgagccaggtttggcaaaagccactcatagtgattccagaaggagcct
cgtgtgcctgtgggagctcccagcagccttgctgatgaagggtgagagct
ctagataggcacaagcagagggagagacacctattgtaaactgggtcaga
acaatgaaattcctcttgagtttctgtgccctaatcaatgtttctgctct
aatgaagccattaatcagaaaagatctgcataaacagaggcccacttggc
acctcaacaaatagccagtgatggattttgcattaaattataagacctac
ctaacaaccttattggttcccaataaatgcatctctctgaaaaattcaac
tcaatatgtaggtatttctaagatctcccagctgcaagtaagctcctcgt
catacagttcttccctctaaaaagagacataccctccaggggggttatga
ctcataagattctagaagttatctaaattcacaaagctcaaaaactcatg
aaacttctcaatcttagacagatcaggaagggtgatccctttagccatgc
tcctgtgagtgacccatcagccatggttctgtaactcagtccaatacact
cactggttcaccaagatagacttgggtggaatggtttctttaggctgtct
tcttcaatgccctatctggactgggcagatgtttgtttttaactctccag
ataaaacatcatggagaacagagatagatgagtcaaggctgatactcaga
tggcagagtatcatgtccctgattctatagccaatttctttttttagagc
aatgagatttatatagcagactctctctgaccaaccactgagagtaatca
cacttcagatggaggacaatcataatatgtacatttttctataaatcaga
ggtgcttggagaagtcagtcaatcagacttgtttccaagagattcttgaa
atagtttgggaacagagctgtgcccatcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_57514621_57515764
seq2: B6Ng01-023E18.g_69_1200 (reverse)

seq1  ATATGAGTGGGCACAGCTGTG-TCCCAAACTATTTCAAGGAACTCCTGGG  49
      |||||| ||||||||||| || ||||||||||||||||| | ||| ||| 
seq2  ATATGA-TGGGCACAGCTCTGTTCCCAAACTATTTCAAGAATCTCTTGGA  49

seq1  AACAGGTCCTGATTGACTGACTTCATCCCCAGCACCTTCTGATTTATATG  99
      |||| || ||||||||||||||||   || |||||| ||||||||||| |
seq2  AACAAGT-CTGATTGACTGACTTC--TCCAAGCACC-TCTGATTTATA-G  94

seq1  AAAAATGTACATTATTATGATGTGTTCT-CATCTGAAGTTGTGATTACTC  148
      ||||||||||| ||||||||| ||| || ||||||||| |||||||||||
seq2  AAAAATGTACA-TATTATGAT-TGTCCTCCATCTGAAG-TGTGATTACTC  141

seq1  TCAGTGGTTGGTCAGGAGAGAGTTCTGCTATATAAAATCTCATTGCTCTA  198
      |||||||||||||| ||||||| |||||||||| ||||||||||||||| 
seq2  TCAGTGGTTGGTCA-GAGAGAG-TCTGCTATAT-AAATCTCATTGCTCT-  187

seq1  AAAAAAAGAAATTGGCTATAGAATCAGGGACATGATAACTCTGCCATCTG  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAAAAGAAATTGGCTATAGAATCAGGGACATGAT-ACTCTGCCATCTG  236

seq1  AGTATCAGCCCTGACTCATCTATCTCTGTTCTCCATGATGTTTTATCTGG  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGCCTTGACTCATCTATCTCTGTTCTCCATGATGTTTTATCTGG  286

seq1  AGGGTTAAAAACAAACATCTGCCCAGTCCAGATAGGGCATTGAAGAAGAC  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAAAACAAACATCTGCCCAGTCCAGATAGGGCATTGAAGAAGAC  336

seq1  AGCCTAAAGAAACCATTCCACCCAAGTCTATCTTGGTGAACCAGTGAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAGAAACCATTCCACCCAAGTCTATCTTGGTGAACCAGTGAGTG  386

seq1  TATTGGACTGAGTTACAGAACCATGGCTGATGGGTCACTCACAGGAGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACTGAGTTACAGAACCATGGCTGATGGGTCACTCACAGGAGCAT  436

seq1  GGCTAAAGGGATCACCCTTCCTGATCTGTCTAAGATTGAGAAGTTTCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGGGATCACCCTTCCTGATCTGTCTAAGATTGAGAAGTTTCATG  486

seq1  AGTTTTTGAGCTTTGTGAATTTAGATAACTTCTAGAATCTTATGAGTCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGAGCTTTGTGAATTTAGATAACTTCTAGAATCTTATGAGTCAT  536

seq1  AACCCCCCTGGAGGGTATGTCTCTTTTTAGAGGGAAGAACTGTATGACGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCTGGAGGGTATGTCTCTTTTTAGAGGGAAGAACTGTATGACGA  586

seq1  GGAGCTTACTTGCAGCTGGGAGATCTTAGAAATACCTACATATTGAGTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTACTTGCAGCTGGGAGATCTTAGAAATACCTACATATTGAGTTG  636

seq1  AATTTTTCAGAGAGATGCATTTATTGGGAACCAATAAGGTTGTTAGGTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCAGAGAGATGCATTTATTGGGAACCAATAAGGTTGTTAGGTAG  686

seq1  GTCTTATAATTTAATGCAAAATCCATCACTGGCTATTTGTTGAGGTGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAATTTAATGCAAAATCCATCACTGGCTATTTGTTGAGGTGCCA  736

seq1  AGTGGGCCTCTGTTTATGCAGATCTTTTCTGATTAATGGCTTCATTAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCCTCTGTTTATGCAGATCTTTTCTGATTAATGGCTTCATTAGAG  786

seq1  CAGAAACATTGATTAGGGCACAGAAACTCAAGAGGAATTTCATTGTTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACATTGATTAGGGCACAGAAACTCAAGAGGAATTTCATTGTTCTG  836

seq1  ACCCAGTTTACAATAGGTGTCTCTCCCTCTGCTTGTGCCTATCTAGAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTTACAATAGGTGTCTCTCCCTCTGCTTGTGCCTATCTAGAGCT  886

seq1  CTCACCCTTCATCAGCAAGGCTGCTGGGAGCTCCCACAGGCACACGAGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTTCATCAGCAAGGCTGCTGGGAGCTCCCACAGGCACACGAGGC  936

seq1  TCCTTCTGGAATCACTATGAGTGGCTTTTGCCAAACCTGGCTCAGGTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGAATCACTATGAGTGGCTTTTGCCAAACCTGGCTCAGGTATA  986

seq1  GAGGAACAAGAGAGGATATGCTGCGGAGCTGAGGGCTTTCCTTCCACTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAAGAGAGGATATGCTGCGGAGCTGAGGGCTTTCCTTCCACTTA  1036

seq1  TGCTCTCTGCTCTGCTAGGACATGTCTGGAGGAGGAGGGTGATGCTTATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGCTCTGCTAGGACATGTCTGGAGGAGGAGGGTGATGCTTATC  1086

seq1  TCTGGAAATGCTGTGTAGGCGGGAGTTGCTTTTGTGTTCTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATGCTGTGTAGGCGGGAGTTGCTTTTGTGTTCTGAATTC  1132