BAC Information

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BAC

Clone NameB6Ng01-024K01
Chromosome7 (Build37)
Map Location 130,555,878 - 130,557,043
singlet/doubletsinglet
Overlap geneLcmt1
Upstream genePrkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17
Downstream geneAqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K01.bB6Ng01-024K01.g
ACCDH856205DH856206
length6861,155
definitionDH856205|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K01, 5' end.DH856206|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaatcaatggtctgcagggtgccatggtgggtaaaggtgcttg
tcaaacaagcctggtgaccttgaatccaatccccagagcctgtcctccat
gaaaaggcatatgaagagagccaactctataaagctgtcctctgacctcc
atgtgttcttcaccttagcatgtaaatatgtacacacacacatagactgt
actttaaatataccaaagaggaagcaggcaaagaatatgaatagtaaatt
aacagcaaaggcatacaaataccccccaaaaggagaagataaaaataaaa
tatacatctttaaagtatgtatgcatcatatggtagattgaataggactg
gccccccatagactcatatacttgaatgcttgtcatagggagtggcacta
cttgacagggattaggaggtgtggccttgttggaggaagtgtgtcactgg
gggtggggtttctaatgctcaagccaggcccagtgtctctctcttcctgt
tgtctatggatatggatatggatatagaactttcaactccttccccagca
tcatctctgcctgcgtgtctccatgcttcctgtcacgctggtaatggact
aaccctctgaaactgtaggcaagcctcaagtcattggcttactttataag
gccctggtcatggtgtctcttttcatcaatagaaca
gaattcaaagcaacagggcctaccagtcttgaatggaagcctctaacaaa
cactgtgtgctgaagtagccttttctgtatgagctggctctcgtgtgtta
cagagtggagagagaacacagtcggggaagtctgagggcatgcctgggtc
ttccactccatggatctccaattatagcatgtagcatagtctcctttggc
tgaatataacgtattgattcaaggacactggtttccttaggcttgtgctt
agagagcatgttagtgagagtcacagggaatggaatcggatgtcctacct
gagcatagtgccaaccttttaatgaactagctatttgacaatggtccttt
aaaatatattttttaatttatttggtccttagttcttttctacattgtga
aatgggataaatactgtatcaccaaatggatttgaagatttgatgaagaa
atgcatgtgagggtgggagaacagaaagaagtgtgcactggttacttatg
gagtaagccacgcctcagtctgacttcagctctagggacctgtggcttct
gcagtggtgggacagagcagggaatcaccagctcgtgagcgagctgacga
cgggggaattggcctcccttttggaactcagtaccaatggagaagagcag
tgttacaacaagtgtgagagctgtgctgatttcccaggtggcttccttat
cttttcactgcttgcttttccatctgttttgaaaagtcgggatcctgaac
tgagccatgtggctcatgctggccatcccagtacttgggaatctgaggca
ggtaagtcactgtgagttcgagggcagctggggttacatagcacacagta
ggtgagagcttgtctttaaaaaaaatcaaatgttaatcctggttttaatg
ttaatgagtaccttaaaagtagttttttggggctgtagagctgctcagca
gtttagagctcttccagagatcctgagttcaattcccaacaacgaccatg
gtggctcccaatcatcctgtaatggcatccaacccccctcctctggtgag
cctgaaaagaggcaacaggtcccatatacgtaggataaaataataaaatt
taaaaaatgttaagagcctggtggggtgcactagctttaactcagcactg
gggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_130555878_130557043
seq2: B6Ng01-024K01.g_64_1218

seq1  GAATTCAAAGCAACAGGGCCTACCAGTCTTGAATGGAAGCCTCTAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAACAGGGCCTACCAGTCTTGAATGGAAGCCTCTAACAAA  50

seq1  CACTGTGTGCTGAAGTAGCCTTTTCTGTATGAGCTGGCTCTCGTGTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTGCTGAAGTAGCCTTTTCTGTATGAGCTGGCTCTCGTGTGTTA  100

seq1  CAGAGTGGAGAGAGAACACAGTCGGGGAAGTCTGAGGGCATGCCTGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGAGAGAGAACACAGTCGGGGAAGTCTGAGGGCATGCCTGGGTC  150

seq1  TTCCACTCCATGGATCTCCAATTATAGCATGTAGCATAGTCTCCTTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCCATGGATCTCCAATTATAGCATGTAGCATAGTCTCCTTTGGC  200

seq1  TGAATATAACGTATTGATTCAAGGACACTGGTTTCCTTAGGCTTGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAACGTATTGATTCAAGGACACTGGTTTCCTTAGGCTTGTGCTT  250

seq1  AGAGAGCATGTTAGTGAGAGTCACAGGGAATGGAATCGGATGTCCTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATGTTAGTGAGAGTCACAGGGAATGGAATCGGATGTCCTACCT  300

seq1  GAGCATAGTGCCAACCTTTTAATGAACTAGCTATTTGACAATGGTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGTGCCAACCTTTTAATGAACTAGCTATTTGACAATGGTCCTTT  350

seq1  AAAATATATTTTTTAATTTATTTGGTCCTTAGTTCTTTTCTACATTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTTTTTAATTTATTTGGTCCTTAGTTCTTTTCTACATTGTGA  400

seq1  AATGGGATAAATACTGTATCACCAAATGGATTTGAAGATTTGATGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATAAATACTGTATCACCAAATGGATTTGAAGATTTGATGAAGAA  450

seq1  ATGCATGTGAGGGTGGGAGAACAGAAAGAAGTGTGCACTGGTTACTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGAGGGTGGGAGAACAGAAAGAAGTGTGCACTGGTTACTTATG  500

seq1  GAGTAAGCCACGCCTCAGTCTGACTTCAGCTCTAGGGACCTGTGGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCCACGCCTCAGTCTGACTTCAGCTCTAGGGACCTGTGGCTTCT  550

seq1  GCAGTGGTGGGACAGAGCAGGGAATCACCAGCTCGTGAGCGAGCTGACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGGACAGAGCAGGGAATCACCAGCTCGTGAGCGAGCTGACGA  600

seq1  CGGGGGAATTGGCCTCCCTTTTGGAACTCAGTACCAATGGAGAAGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGAATTGGCCTCCCTTTTGGAACTCAGTACCAATGGAGAAGAGCAG  650

seq1  TGTTACAACAAGTGTGAGAGCTGTGCTGATTTCCCAGGTGGCTTCCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAACAAGTGTGAGAGCTGTGCTGATTTCCCAGGTGGCTTCCTTAT  700

seq1  CTTTTCACTGCTTGCTTTTCCATCTGTTTTGAAAAGTCGGGATCCTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACTGCTTGCTTTTCCATCTGTTTTGAAAAGTCGGGATCCTGAAC  750

seq1  TGAGCCATGTGGCTCATGCTGGCCATCCCAGTACTTGGGAATCTGAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATGTGGCTCATGCTGGCCATCCCAGTACTTGGGAATCTGAGGCA  800

seq1  GGTAAGTCACTGTGAGTTCGAGGGCAGCTGGGGTTACATAGCACACAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTCACTGTGAGTTCGAGGGCAGCTGGGGTTACATAGCACACAGTA  850

seq1  GGTGAGAGCTTGTCTTTAAAAAAAAATCAAATGTTAATCCTGGTTTTAAT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTGAGAGCTTGTCTTT-AAAAAAAATCAAATGTTAATCCTGGTTTTAAT  899

seq1  GTTAATGAGTACCTTAAAAGTAGTTTTTTGGGGCTGTAGAGCTGGCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTAATGAGTACCTTAAAAGTAGTTTTTTGGGGCTGTAGAGCT-GCTCAG  948

seq1  CAGTTAAGAGCTCTTCCAGAGATCCTGAGTTCAATTCCCAACAACGA-CA  999
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTTTAGAGCTCTTCCAGAGATCCTGAGTTCAATTCCCAACAACGACCA  998

seq1  TGGTGGCTCACAATCAT-CTGTAATGGTATCCAA-CACCCTCTTCTGGTG  1047
      ||||||||| ||||||| ||||||||| |||||| | ||||| |||||||
seq2  TGGTGGCTCCCAATCATCCTGTAATGGCATCCAACCCCCCTCCTCTGGTG  1048

seq1  AGTCTGAAGAGA-GCAATAGTGTCCGCATATACGTAGAATAAATAAATAA  1096
      || ||||| ||| |||| || |||| ||||||||||| |||||  |||||
seq2  AGCCTGAAAAGAGGCAACAG-GTCC-CATATACGTAGGATAAAATAATAA  1096

seq1  AATCTTTAAAAAAATAGTTTTAAGTAGCTGGGTGGTGGTGGCACATGGCT  1146
      ||  |||||||||    | ||||| |||  ||||| ||| |||| | |||
seq2  AA--TTTAAAAAA----TGTTAAG-AGCCTGGTGG-GGT-GCAC-TAGCT  1136

seq1  TTAATCTCAGCACTGGGGAG  1166
      |||| |||||||||||||||
seq2  TTAA-CTCAGCACTGGGGAG  1155