BAC Information

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BAC

Clone NameB6Ng01-024K11
Chromosome7 (Build37)
Map Location 107,432,231 - 107,576,343
singlet/doubletdoublet
Overlap geneP4ha3, Ppme1, AU020772
Upstream geneMtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1
Downstream geneUcp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K11.bB6Ng01-024K11.g
ACCDH856224DH856225
length1,097988
definitionDH856224|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K11, 5' end.DH856225|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,432,231 - 107,433,237)(107,575,352 - 107,576,343)
sequence
gaattcttcaagctactcaaagaagaacaaatttcaatcctttccagatt
cttctaaactgtaggaaaggagggaacaattcccactgtgatctctgaaa
ttagttttacattgatataaagaccagacaaaaataattcgagaaaacta
tgggctaccttctcttataataaagatacaaaaatgttacaacaaaatat
caacaaacaaaatccagcaacatattaatgtgaatgtgcattgtgaccta
agaggatttacattaggcatttgaggttggtttaacatacaataatttat
gtaacaccctatatggacgtggatggggaaaactcagctcaggccttcag
taagagcagtgtgtatgcactcttagctgctggccttctcacccgcccaa
gtttcctattgcttagacaagttatcacaaactctggggcttataataac
ccagatttttttatcctactgcctcagaattcagaagtctgaaccgatgt
attagactttttcagcactgtgaccagatatctgacagacacactgtaac
agagaaaagatttctttgactcctggagcccatcatgaaaaggaaggtgt
gttggcaggtcttgccccgtctggtggctagcatatgtggccggtgctca
catccagcagacagaaacctgatggctctggccagcagtgaagccttagt
gaacctagtggagtatgtaagccctactttccccaaagctccatagcttg
gtttttaccaagtattcaagaggatgaaactgtgaggttcatttcaaatt
caaaccgtaacgaataggttgtcacgagataaaatcaaggtattggcaga
tctgttcttcctgcagactaggaaagatctgtcccccagccttctcaacc
ttctagatactacctacaacctgttactccagaccgtttatcccatttca
aagtcgcacacagcatcatcaagttctgattggctgttatggtctgtatc
ttcttgccgttgttgttgtttcagacaggttctctgcctcccaatgctgg
ataaaggctgggccacaccgcccggttttcttgccttttaaaggact
gaattcagaacctctggaaaagaaaccagtattcttaatcgctgagtcat
ctttccaggccaaagttagccccgtggctttcttttagtagacacgtggt
aaaaattggagctagctttaataagttatcggccattatgctgagaacac
atggaataagtacaagatggggaaaaaaggatgtgatctagagacggaca
tgcagccagtgcacagcatggtttgagggtacagagcatagccatgatag
taggggactaagaagagagaacacaaagttgttgcaaagtgaagagagga
atttgcaataacagtataagagactacaagtgatttcctgaaattctgaa
atgctttctttaacagaaagtcatggttagtgaaatggaaatttttcaca
agtcacccacatgagagcatcacactatatagactacacctcaggaaggt
ctcagtcagtcacccacatgagagcatcatgctgtatagactgcaccaca
ggaaggcttaagaagcactcttcaaaggtggacttacttggctgctgcct
gaagaccacaggctctgataatatggactgagatggagacagctcgggca
gcaagaattccctctgctgttcttgggctacgccggtacctcaaacccac
atccaggaaacctgatgaatgaaaacaggaagaaaaagactactaggtta
gctggaaggatctctgtctctataaaccatcagctcctagccagggagac
aggaggatgactgcaatcacagctgcttataataccatttaaaatgccaa
attcttcttgttaagctctttcaagttctattttatctttcaagaactat
ctatctatctatctatctatctatctatctatctatctgggtggggagag
gttaagtgtgaagtcagagacatttgtgggagttggttacttctaccaga
agtcaagggactgactgacaacatgaccagctagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107432231_107433237
seq2: B6Ng01-024K11.b_145_1128

seq1  TGATATAAAGACCAGACAAAAATAATTCGAGAAAACTATGGGCTACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAGACCAGACAAAAATAATTCGAGAAAACTATGGGCTACCTTC  50

seq1  TCTTATAATAAAGATACAAAAATGTTACAACAAAATATCAACAAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAATAAAGATACAAAAATGTTACAACAAAATATCAACAAACAAAA  100

seq1  TCCAGCAACATATTAATGTGAATGTGCATTGTGACCTAAGAGGATTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACATATTAATGTGAATGTGCATTGTGACCTAAGAGGATTTACA  150

seq1  TTAGGCATTTGAGGTTGGTTTAACATACAATAATTTATGTAACACCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATTTGAGGTTGGTTTAACATACAATAATTTATGTAACACCCTAT  200

seq1  ATGGACGTGGATGGGGAAAACTCAGCTCAGGCCTTCAGTAAGAGCAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACGTGGATGGGGAAAACTCAGCTCAGGCCTTCAGTAAGAGCAGTGT  250

seq1  GTATGCACTCTTAGCTGCTGGCCTTCTCACCCGCCCAAGTTTCCTATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACTCTTAGCTGCTGGCCTTCTCACCCGCCCAAGTTTCCTATTGC  300

seq1  TTAGACAAGTTATCACAAACTCTGGGGCTTATAATAACCCAGATTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAGTTATCACAAACTCTGGGGCTTATAATAACCCAGATTTTTTT  350

seq1  ATCCTACTGCCTCAGAATTCAGAAGTCTGAACCGATGTATTAGACTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTGCCTCAGAATTCAGAAGTCTGAACCGATGTATTAGACTTTTT  400

seq1  CAGCACTGTGACCAGATATCTGACAGACACACTGTAACAGAGAAAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGTGACCAGATATCTGACAGACACACTGTAACAGAGAAAAGATT  450

seq1  TCTTTGACTCCTGGAGCCCATCATGAAAAGGAAGGTGTGTTGGCAGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACTCCTGGAGCCCATCATGAAAAGGAAGGTGTGTTGGCAGGTCT  500

seq1  TGCCCCGTCTGGTGGCTAGCATATGTGGCCGGTGCTCACATCCAGCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCGTCTGGTGGCTAGCATATGTGGCCGGTGCTCACATCCAGCAGAC  550

seq1  AGAAACCTGATGGCTCTGGCCAGCAGTGAAGCCTTAGTGAACCTAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGATGGCTCTGGCCAGCAGTGAAGCCTTAGTGAACCTAGTGGA  600

seq1  GTATGTAAGCCCTAC-TTCCCCAAAGCTCCATAGCTTGGTTTTTACCAAG  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGCCCTACTTTCCCCAAAGCTCCATAGCTTGGTTTTTACCAAG  650

seq1  TATTCAAGAGGATGAAACTGTGAGGTTCATTTCAAATTCAAACCGTAACG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGAGGATGAAACTGTGAGGTTCATTTCAAATTCAAACCGTAACG  700

seq1  AATAGG-TGTCACGAGATAAAATCAAGGTATTGGCAGATCTGTTCTTCCT  748
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTGTCACGAGATAAAATCAAGGTATTGGCAGATCTGTTCTTCCT  750

seq1  GCAGACTAGGAAAGATCTGTCCCCCAGCCTTCTCAACCTTCTAGAAGCTA  798
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  GCAGACTAGGAAAGATCTGTCCCCCAGCCTTCTCAACCTTCTAGATACTA  800

seq1  CCTACAACCTGTTACTCACAGACCGTTTATCCATTTTCAAAGTCGCAACA  848
      ||||||||||||||||| ||||||||||||||  |||||||||||| |||
seq2  CCTACAACCTGTTACTC-CAGACCGTTTATCCCATTTCAAAGTCGC-ACA  848

seq1  CAGCATCATCAAGTCTCTGATTTGGCTGTTATTGTCCTGTATCTTTCTTT  898
      |||||||||||||| ||||| ||||||||||| || |||||||||   ||
seq2  CAGCATCATCAAGT-TCTGA-TTGGCTGTTATGGT-CTGTATCTT--CTT  893

seq1  GCCGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGCCTCCCAAGTG  948
      ||||||       ||||| ||  |||||||  ||||||||||||||| ||
seq2  GCCGTT------GTTGTTGTTTCAGACAGG--TTCTCTGCCTCCCAA-TG  934

seq1  CTGGGATTAAAGGCGTGGGCCACCACCGCCCGGCTTTTTCTTTGCCTTTT  998
      ||||   ||||||| ||||||| ||||||||||  ||||| |||||||||
seq2  CTGG--ATAAAGGC-TGGGCCA-CACCGCCCGG--TTTTC-TTGCCTTTT  977

seq1  TAAAAGGAC  1007
        |||||||
seq2  --AAAGGAC  984

seq1: chr7_107575352_107576343
seq2: B6Ng01-024K11.g_69_1055 (reverse)

seq1  TTTCTAGCTGG-CATGTTGTCAGTCAGTCCCTAGGACCTACTTGGTAGAA  49
      ||||||||||| ||||||||||||||||||||  ||| |   ||||||||
seq2  TTTCTAGCTGGTCATGTTGTCAGTCAGTCCCT-TGACTT--CTGGTAGAA  47

seq1  GTAACCAACTCCCACAAATTGTCTCTGACTTTCACACTTAACCTCTCCCC  99
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  GTAACCAACTCCCACAAA-TGTCTCTGAC-TTCACACTTAACCTCTCCCC  95

seq1  ACCCCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTTC  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CCCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTTC  144

seq1  TTGAAAGATAAAATAGAACTTGAAAGAGCTTAACAAGAAGAATTTGGCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGATAAAATAGAACTTGAAAGAGCTTAACAAGAAGAATTTGGCAT  194

seq1  TTTAAATGGTATTATAAGCAGCTGTGATTGCAGTCATCCTCCTGTCTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGTATTATAAGCAGCTGTGATTGCAGTCATCCTCCTGTCTCCC  244

seq1  TGGCTAGGAGCTGATGGTTTATAGAGACAGAGATCCTTCCAGCTAACCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGGAGCTGATGGTTTATAGAGACAGAGATCCTTCCAGCTAACCTA  294

seq1  GTAGTCTTTTTCTTCCTGTTTTCATTCATCAGGTTTCCTGGATGTGGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTTTTCTTCCTGTTTTCATTCATCAGGTTTCCTGGATGTGGGTT  344

seq1  TGAGGTACCGGCGTAGCCCAAGAACAGCAGAGGGAATTCTTGCTGCCCGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACCGGCGTAGCCCAAGAACAGCAGAGGGAATTCTTGCTGCCCGA  394

seq1  GCTGTCTCCATCTCAGTCCATATTATCAGAGCCTGTGGTCTTCAGGCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCATCTCAGTCCATATTATCAGAGCCTGTGGTCTTCAGGCAGC  444

seq1  AGCCAAGTAAGTCCACCTTTGAAGAGTGCTTCTTAAGCCTTCCTGTGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTAAGTCCACCTTTGAAGAGTGCTTCTTAAGCCTTCCTGTGGTG  494

seq1  CAGTCTATACAGCATGATGCTCTCATGTGGGTGACTGACTGAGACCTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATACAGCATGATGCTCTCATGTGGGTGACTGACTGAGACCTTCC  544

seq1  TGAGGTGTAGTCTATATAGTGTGATGCTCTCATGTGGGTGACTTGTGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTAGTCTATATAGTGTGATGCTCTCATGTGGGTGACTTGTGAAA  594

seq1  AATTTCCATTTCACTAACCATGACTTTCTGTTAAAGAAAGCATTTCAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCATTTCACTAACCATGACTTTCTGTTAAAGAAAGCATTTCAGAA  644

seq1  TTTCAGGAAATCACTTGTAGTCTCTTATACTGTTATTGCAAATTCCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAATCACTTGTAGTCTCTTATACTGTTATTGCAAATTCCTCTC  694

seq1  TTCACTTTGCAACAACTTTGTGTTCTCTCTTCTTAGTCCCCTACTATCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGCAACAACTTTGTGTTCTCTCTTCTTAGTCCCCTACTATCAT  744

seq1  GGCTATGCTCTGTACCCTCAAACCATGCTGTGCACTGGCTGCATGTCCGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGCTCTGTACCCTCAAACCATGCTGTGCACTGGCTGCATGTCCGT  794

seq1  CTCTAGATCACATCCTTTTTTCCCCATCTTGTACTTATTCCATGTGTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATCACATCCTTTTTTCCCCATCTTGTACTTATTCCATGTGTTCT  844

seq1  CAGCATAATGGCCGATAACTTATTAAAGCTAGCTCCAATTTTTACCACGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAATGGCCGATAACTTATTAAAGCTAGCTCCAATTTTTACCACGT  894

seq1  GTCTACTAAAAGAAAGCCACGGGGCTAACTTTGGCCTGGAAAGATGACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAAAAGAAAGCCACGGGGCTAACTTTGGCCTGGAAAGATGACTC  944

seq1  AGCGATTAAGAATACTGGTTTCTTTTCCAGAGGTTCTGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATTAAGAATACTGGTTTCTTTTCCAGAGGTTCTGAATTC  987