BAC Information

Click to search

BAC

Clone NameB6Ng01-025C17
Chromosome7 (Build37)10 (Build37)
Map Location 50,846,507 - 50,847,67760,908,996 - 60,909,183
singlet/doubletsingletsinglet
Overlap geneZfp719
Upstream geneEG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301
Downstream gene4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025C17.bB6Ng01-025C17.g
ACCDH856597DH856598
length1,1481,015
definitionDH856597|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C17, 5' end.DH856598|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,846,507 - 50,847,677)(60,908,996 - 60,909,183)
sequence
gaattcacaagtgacatccatgacatcctatgagcaaactcagaatgcag
agaaactatagtgattctctgcctatgggagatctgtcattgatatgtat
cagctgaaggcatattgtcaaggtcacacatattcctgaagctgtgagat
attgttcatcaactctaggtgcactgtccatgcaatactgagaagagaca
tatattgtgaatgcagaaagtccctcaaaataatgttgtttcaatagtct
caagcactcataccaggcactcatctgatcatgtaaaagaatttattgta
gagtcagttcctcatccatttccctcgtcaaaaatattccccttggtttt
aatgaaattttatttatcacagatctaaataagactaagaagatacacta
ctcagttggtaaaatctttgtcttctggacacaggcaaacacataacatg
ccacaggtgtctacacacaatacatacacaaactttatacaagccatagt
ccatagtttagaagaaaaaagctatgcattgcttgtttaaacataaatat
aattatatgtttgagaaataatcaacttgtaggaagaagcacaaatacct
gtactgtaggagatattttatggactgtgtttctttgcatgttgaagaaa
tgttgactaattatttgagaccttctaaagttaaggttacaaggttttga
ggctttatagaaaagtttgttgaaaactacatcaatattgttttttgttt
gtttgtttaatgtgttttgttttgtttttttaaacatgaaacagggtcac
actatatagctcaggctgtactggaattcactatatagaccagactggcc
ttgaactcacagaattctgccttcctctacctcccaaggggttggattaa
agatgtgcactagtatgcctggctggatagtaatattttattttcattaa
tgaattactttaaattctggtcagactttcccttctcacttctttcctct
ttcttctcttcttttctcttagaaagggaggcctcaatggatatcaacca
cttggctttcagttgcaagaggacaggtgcaacatcttcttttggaggct
aacaaggagtcatttaggggaaggggcccaagcggcactgaatcagag
gaattctttccccgtctgctccagcaaaacatcctttcacctctgtgccc
cagcaaaacatcatttgatataactgactttctaaagaaactagaagttt
ctcctggtgttcctgttggccctagtccctcctgctgattcgtgttttct
ctcctggctctactggactgcttgtgtatctgtgaaatatttgtgagagg
atcaagctgctgctactgacttgtgaactggactgctaatttccaggcaa
tgcagctgggatttgctccaaagaatattttctaaacaggtccacttccc
ccccgccccggtgtcctttattatccactacctctggtgggtggtgaact
acaagggtggttaaagtactaaagaaagcctggcatggtggtgcatacct
ttaatcccagcactcgggaggcagaggcaggcggatttctgagtttgagg
tcagcctggtctacaaagtgagttccaggacagccagggctatgcagaga
aaccctgtccaaaacaaaaaacaaaaaaacgaacaaacaaaaacaaaaaa
caaaaaaataaagtattaaaagaaccatcattaaaaattagagtttgaaa
aaaataaagctacatatataagtgacccccaaaattctaccagggaactc
ctacagctgataaacactttcaatgaagtggctggacacaatattaaata
aaaaaaatttagtagtcctcctatgtacaaaaaataaattggttaagaaa
gaacccagggaaacaacatccttcacaatagtctcaattaatataaaata
tcttgggataactcttaacaagcaagtgaagatatgtatggcaagatttt
caaattttgaagaaagaaatttgaagagacctcagagtggaaaggatctc
tcatgctcatggatcagtaggataacttagtaaaaatgctcatattgcaa
aagcaatcttcagattcaatgcaaccccttcataattccaactcaacttc
ttaacagaccttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50846507_50847677
seq2: B6Ng01-025C17.b_46_1193

seq1  GAATTCACAAGTGACATCCATGACATCCTATGAGCAAACTCAGAATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGTGACATCCATGACATCCTATGAGCAAACTCAGAATGCAG  50

seq1  AGAAACTATAGTGATTCTCTGCCTATGGGAGATCTGTCATTGATATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTATAGTGATTCTCTGCCTATGGGAGATCTGTCATTGATATGTAT  100

seq1  CAGCTGAAGGCATATTGTCAAGGTCACACATATTCCTGAAGCTGTGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAGGCATATTGTCAAGGTCACACATATTCCTGAAGCTGTGAGAT  150

seq1  ATTGTTCATCAACTCTAGGTGCACTGTCCATGCAATACTGAGAAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCATCAACTCTAGGTGCACTGTCCATGCAATACTGAGAAGAGACA  200

seq1  TATATTGTGAATGCAGAAAGTCCCTCAAAATAATGTTGTTTCAATAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTGAATGCAGAAAGTCCCTCAAAATAATGTTGTTTCAATAGTCT  250

seq1  CAAGCACTCATACCAGGCACTCATCTGATCATGTAAAAGAATTTATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCATACCAGGCACTCATCTGATCATGTAAAAGAATTTATTGTA  300

seq1  GAGTCAGTTCCTCATCCATTTCCCTCGTCAAAAATATTCCCCTTGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTTCCTCATCCATTTCCCTCGTCAAAAATATTCCCCTTGGTTTT  350

seq1  AATGAAATTTTATTTATCACAGATCTAAATAAGACTAAGAAGATACACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTTTATTTATCACAGATCTAAATAAGACTAAGAAGATACACTA  400

seq1  CTCAGTTGGTAAAATCTTTGTCTTCTGGACACAGGCAAACACATAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGGTAAAATCTTTGTCTTCTGGACACAGGCAAACACATAACATG  450

seq1  CCACAGGTGTCTACACACAATACATACACAAACTTTATACAAGCCATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTGTCTACACACAATACATACACAAACTTTATACAAGCCATAGT  500

seq1  CCATAGTTTAGAAGAAAAAAGCTATGCATTGCTTGTTTAAACATAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTTAGAAGAAAAAAGCTATGCATTGCTTGTTTAAACATAAATAT  550

seq1  AATTATATGTTTGAGAAATAATCAACTTGTAGGAAGAAGCACAAATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATGTTTGAGAAATAATCAACTTGTAGGAAGAAGCACAAATACCT  600

seq1  GTACTGTAGGAGATATTTTATGGACTGTGTTTCTTTGCATGTTGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTAGGAGATATTTTATGGACTGTGTTTCTTTGCATGTTGAAGAAA  650

seq1  TGTTGACTAATTATTTGAGACCTTCTAAAGTTAAGGTTACAAGGTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTAATTATTTGAGACCTTCTAAAGTTAAGGTTACAAGGTTTTGA  700

seq1  GGCTTTATAGAAAAGTTTGTTGAAAACTACATCAATATTGTTTTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATAGAAAAGTTTGTTGAAAACTACATCAATATTGTTTTTTGTTT  750

seq1  GTTTGTTTAATGTGTTTTGTTTTGTTTTTTTAAACATGAAACAGGGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTAATGTGTTTTGTTTTGTTTTTTTAAACATGAAACAGGGTCAC  800

seq1  ACTATATAGCTCAGGCTGTACTGGAATTCACTATATAGACCAGACTGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAGCTCAGGCTGTACTGGAATTCACTATATAGACCAGACTGGCC  850

seq1  TTGAACTCACAGAATTCTGCCTTCCTCTACCTCCCAAGGGGTTGGATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCACAGAATTCTGCCTTCCTCTACCTCCCAAGGGGTTGGATTAA  900

seq1  AGATGTGCACTAGTATGCCTGGCTGGATAGTAATATTTTTATTTTCATTA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGATGTGCACTAGTATGCCTGGCTGGATAGTAATA-TTTTATTTTCATTA  949

seq1  ATGAATTACTTTACATTCTGGTCAGAACTTTCCCTTCTCACCTTCTTTCC  1000
      ||||||||||||| ||||||||||| |||||||||||||| ||||||| |
seq2  ATGAATTACTTTAAATTCTGGTCAG-ACTTTCCCTTCTCA-CTTCTTT-C  996

seq1  CTCTTTCCTCCTCCTTCCTTTTCTCCTTAGAAAAGGGGAGGCCTCCAATG  1050
      |||||| || |||  | ||||||| ||||||||  ||||||||| |||||
seq2  CTCTTT-CTTCTC--TTCTTTTCT-CTTAGAAA--GGGAGGCCT-CAATG  1039

seq1  GATATCAACCCACCTTGGCCTATCAAGTTGCAGTAGGACAAGGTGCATCA  1100
      ||||||||||   ||||| || || |||||||  ||||| ||||||| ||
seq2  GATATCAACC--ACTTGG-CTTTC-AGTTGCAAGAGGAC-AGGTGCAACA  1084

seq1  TCTTCTATT-GAGGCTAGACAAGGCAGTTCAGTTAGGGGAAAGGGGCCCA  1149
      |||||| || ||||||| |||||| || ||| ||||||| ||||||||||
seq2  TCTTCTTTTGGAGGCTA-ACAAGG-AG-TCATTTAGGGG-AAGGGGCCCA  1130

seq1  AAGGCAGGCAACTGAATCAGAG  1171
      |  || ||| ||||||||||||
seq2  A--GC-GGC-ACTGAATCAGAG  1148

seq1: chr10_60908996_60909183
seq2: B6Ng01-025C17.g_441_617

seq1  AGCCAGGCATGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAG  50
      |||| ||||||||||||||  |||||||||||||||||||||||||||||
seq2  AGCCTGGCATGGTGGTGCATACCTTTAATCCCAGCACTCGGGAGGCAGAG  50

seq1  GCAGGCGGATTTCTGGGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  100
      ||||||||||||||| ||| |||| |||||||||||||||||||||||||
seq2  GCAGGCGGATTTCTGAGTTTGAGGTCAGCCTGGTCTACAAAGTGAGTTCC  100

seq1  AGGACAGCCTGGGCTATACAGAGAAACCCTGTCTCAGAAAAACAAACAAA  150
      ||||||||| ||||||| |||||||||||||||     ||||||||    
seq2  AGGACAGCCAGGGCTATGCAGAGAAACCCTGTC----CAAAACAAA----  142

seq1  CAAACAAAAAACCCAAACCAAACAAAAACAAAAAACAA  188
       |||||||||| | ||  ||||||||||||||||||||
seq2  -AAACAAAAAAACGAA--CAAACAAAAACAAAAAACAA  177