BAC Information

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BAC

Clone NameB6Ng01-025D17
Chromosome7 (Build37)
Map Location 144,919,706 - 145,051,256
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668771, Mgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290, Mapk1ip1, Ppp2r2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025D17.bB6Ng01-025D17.g
ACCDH856643DH856644
length1,1151,177
definitionDH856643|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D17, 5' end.DH856644|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,919,706 - 144,920,833)(145,050,087 - 145,051,256)
sequence
gaattctcatggcaatggctgaattgaccgctgagaagggaagcatcctg
ctcctttcccttcttgtttgaggaaagctgtcatgctggcacatggatga
ggagtgaatgagtgcatatgccacttttctagggcagagtggacctctga
tcttgagggtcacattggcagccctaccagagactcttggcctcagattt
ctggcaccacggagcctctcttagcctcaagtcagtccagaattgtctgc
tgagtgagtgctctggtatgctggtccagctcataagatcttttcttcag
aatgtcactatatacagacatggcccccaacttaccagaatcagggtgta
ttttggaggaaaaattggactatggtattttgatgggataggcctgaccc
aggttccctggtcactgaactgtggcaaagcatgtgctttctttttgttc
cttgtgtgccatcattgtggagaatgaaaggccctccgtgtagccagaag
cctatttttcctgtttgaaaaattccctctatttcgaggacattgtagtt
cttagcatgaatgtataacactgaatttctgttttaaatttaaccaaaaa
taatttttctgggactgagtgttcataatgtcacattctgctttttggtc
tgtgtatctacctatgacacctctgttctgatgaagctcacaggcaagcg
gaggctgtggggtgcttgctgctctacagctaccttccatcccatctgtg
cattggtgacattgcatggtcccatacactcactgtcgtctgagggcaga
ggaggaggggaacactgattgtagaggtcacaggacttgaaaggactcag
acagagatgggagagggcttgatggagaagaggagccactctgggcaatg
tgtttgattgattggggacttgatacagtttattcaatagaaaaggtttc
cttttctgggacttgtctgtttgggatatggtatgtgcccagtaaattgt
ttaacagtaacatattgcatagatgtactctagctactttgcttgttgct
atgaaaaactcctatcagaaactttaggaagaagattggttttggctcat
ggttctggaatcaca
gaattctgaagccctgtgagccacgggcagccgtgactgtgccagagacc
agccaatgagacggaagcaacactctggggttcactgttcttttgttaat
atgggaagacatcttgaacgaaagtcctggttttactgcattggatttgg
cagttgaaatgagccaggctttgcctaatgtgtacatgccttgattacat
aaggaccatctacagatgcatcaaatgtagagcctggctttcacaaagcc
ttgctttactaaaacaaaaagagcagagtgtgtgtttctctatccactag
gcaaattctggtgaaggatcgtagacttaggttctgaagaggcccaaagt
aatgttgccaaagcccctcagcctttcttctacgaagatgactccgtcag
taacttcttgctgtgcacacaaagacctgatttcatatcctccacactca
agctgggcacaggggcatgaacataatctaacacttggagaagtggagac
aggaagattccaggactcatttagccaggcaatggaaaagagccagcagg
ctccagattcagtgagagacactgtctctaaaactaaaggggacaggaat
taaggaagacacatgacatgacttttagcatttacaccacactcacatat
gcacatgcacacaaactcacacatttcaaaaggctatgcacacatgtata
tatacatacacacacacacacacacacacacacacacaggcatgcacaca
tgttacataaacttgcacaagttcaaaatgcatgcattcagacatgtaac
acacaccctttactattctggttcagtgaaaagatttatcaatcgactaa
tattccaggaaatcactgaggcaggttctaaaattacaggccattcctac
tgaagaacattgctgactttccagtggctcagcgaccatctgtgcagatc
ctatctctcctgaagctctctcccctggtggtctctgtattacacaaaaa
caactgccggcccgctggccctgagtctgtcaattaaacccacacttctt
cttccaaagacgtagtgcttggtcagagcctcctgacttcctcagcctat
tttgaacagaaaatatgggccgccccacccccatcatttcctggtgcttc
tccagtgctgaagcaacctggatgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_144919706_144920833
seq2: B6Ng01-025D17.b_45_1159

seq1  GAATTCTCATGGCAATGGCTGAATTGA-GGCTGAGAAGGGAAGCATCCTG  49
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GAATTCTCATGGCAATGGCTGAATTGACCGCTGAGAAGGGAAGCATCCTG  50

seq1  CTCCTTTCCCTTCTTGTTTGAGGAAAGCTGTCATGCTGGCACATGGATGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCCTTCTTGTTTGAGGAAAGCTGTCATGCTGGCACATGGATGA  100

seq1  GGAGTGAATGAGTGCATATGCCACTTTTCTAGGGCAGAGTGGACCTCTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAATGAGTGCATATGCCACTTTTCTAGGGCAGAGTGGACCTCTGA  150

seq1  TCTTGAGGGTCACATTGGCAGCCCTACCAGAGACTCTTGGCCTCAGATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGGTCACATTGGCAGCCCTACCAGAGACTCTTGGCCTCAGATTT  200

seq1  CTGGCACCACGGAGCCTCTCTTAGCCTCAAGTCAGTCCAGAATTGTCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCACGGAGCCTCTCTTAGCCTCAAGTCAGTCCAGAATTGTCTGC  250

seq1  TGAGTGAGTGCTCTGGTATGCTGGTCCAGCTCATAAGATCTTTTCTTCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTGCTCTGGTATGCTGGTCCAGCTCATAAGATCTTTTCTTCAG  300

seq1  AATGTCACTATATACAGACATGGCCCCCAACTTACCAGAATCAGGGTGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACTATATACAGACATGGCCCCCAACTTACCAGAATCAGGGTGTA  350

seq1  TTTTGGAGGAAAAATTGGACTATGGTATTTTGATGGGATAGGCCTGACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGAAAAATTGGACTATGGTATTTTGATGGGATAGGCCTGACCC  400

seq1  AGGTTCCCTGGTCACTGAACTGTGGCAAAGCATGTGCTTTCTTTTTGTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCTGGTCACTGAACTGTGGCAAAGCATGTGCTTTCTTTTTGTTC  450

seq1  CTTGTGTGCCATCATTGTGGAGAATGAAAGGCCCTCCGTGTAGCCAGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGCCATCATTGTGGAGAATGAAAGGCCCTCCGTGTAGCCAGAAG  500

seq1  CCTATTTTTCCTGTTTGAAAAATTCCCTCTATTTCGAGGACATTGTAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTTCCTGTTTGAAAAATTCCCTCTATTTCGAGGACATTGTAGTT  550

seq1  CTTAGCATGAATGTATAACACTGAATTTCTGTTTTAAATTTAACCAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATGAATGTATAACACTGAATTTCTGTTTTAAATTTAACCAAAAA  600

seq1  TAATTTTTCTGGGACTGAGTGTTCATAATGTCACATTCTGCTTTTTGGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTGGGACTGAGTGTTCATAATGTCACATTCTGCTTTTTGGTC  650

seq1  TGTGTATCTACCTATGACACCTCTGTTCTGATGAAGCTCACAGGCAAGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCTACCTATGACACCTCTGTTCTGATGAAGCTCACAGGCAAGCG  700

seq1  GAGGCTGTGGGGTGCTTGCTGCTCTACAGCTACCTTCCATCCCATCTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTGGGGTGCTTGCTGCTCTACAGCTACCTTCCATCCCATCTGTG  750

seq1  CATTGGTGACATTGCATGGTCCCATACACTCACTGTCGTCTGAGGGCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGACATTGCATGGTCCCATACACTCACTGTCGTCTGAGGGCAGA  800

seq1  GGAGGAGGGGAACACTGATTGTAGAGGTCACAGGACTTGAAAGGACTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGGAACACTGATTGTAGAGGTCACAGGACTTGAAAGGACTCAG  850

seq1  ACAGAGATGGGAGAGGGCTTGATGGAGAAGAGGAGCCACTCTGGGCAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGGGAGAGGGCTTGATGGAGAAGAGGAGCCACTCTGGGCAATG  900

seq1  TGTATGATTGATT-GGGACTTGATACAGTTTATTCAATAGAAAAGGTTTC  948
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATTGATTGGGGACTTGATACAGTTTATTCAATAGAAAAGGTTTC  950

seq1  C-TTTCTGGGACTTGTCTGTTTTGGGAATAATGGTATGTGCCCAGTAAAA  997
      | ||||||||||||||||| |||||||   |||||||||||||||| |||
seq2  CTTTTCTGGGACTTGTCTG-TTTGGGA--TATGGTATGTGCCCAGT-AAA  996

seq1  ATGTTTAACAGTAAACATA-TGCATAAGAATGTACACTAGCTACTTTGCT  1046
       ||||||||||| |||||| ||||||   |||||| ||||||||||||||
seq2  TTGTTTAACAGT-AACATATTGCATA--GATGTACTCTAGCTACTTTGCT  1043

seq1  TGTTGCTATGACAAAACACCTTATACAAGAAACTTTTAAGGAAAGAAAGA  1096
      ||||||||||| ||||| ||   ||  |||||||||  |||||   ||||
seq2  TGTTGCTATGA-AAAACTCC---TATCAGAAACTTT--AGGAA--GAAGA  1085

seq1  TTGGTTTTGGCTCATGGTTTCTGGAGATCACA  1128
      ||||||||||||||||| ||||||| ||||||
seq2  TTGGTTTTGGCTCATGG-TTCTGGA-ATCACA  1115

seq1: chr7_145050087_145051256
seq2: B6Ng01-025D17.g_71_1247 (reverse)

seq1  GAGCATCCA-GCTGCCTCAGCACTGGAGACAGCAC--AGAAATGATGGGG  47
      ||||||||| | ||| ||||||||||||| |||||   ||||||||||||
seq2  GAGCATCCAGGTTGCTTCAGCACTGGAGA-AGCACCAGGAAATGATGGGG  49

seq1  CT-GGGCGGCCCATTATTTCCTGATCAAAAATCAGACTGAAGAAGATCAG  96
       | |||||||||| ||||| ||| ||||||   || |||| |||| ||||
seq2  GTGGGGCGGCCCA-TATTTTCTGTTCAAAA--TAGGCTGAGGAAG-TCAG  95

seq1  GATGGCTCTGACCAAGCACTACTGTGCTTTGGAAGGAGAA--GTGGGCTT  144
      || ||||||||||||||||||| || ||||||||| ||||  ||||| ||
seq2  GA-GGCTCTGACCAAGCACTAC-GT-CTTTGGAAGAAGAAGTGTGGGTTT  142

seq1  AATTGATCAG-CTCA-GGCCAGCGGGCCGGCAGTTGATTTTGTGTAATAC  192
      |||||| ||| |||| |||||||||||||||||||| |||||||||||||
seq2  AATTGA-CAGACTCAGGGCCAGCGGGCCGGCAGTTGTTTTTGTGTAATAC  191

seq1  AGAGA-CAC--AGGGAGAGAGCTTCAGGAGAGATAGAATCTGCACAGATG  239
      ||||| |||   |||||||||||||||||||||||| |||||||||||||
seq2  AGAGACCACCAGGGGAGAGAGCTTCAGGAGAGATAGGATCTGCACAGATG  241

seq1  GTCGCTGAAGCCACTGGAAAGTCAGCAATGTTC-TCAGTAGGAATGGCCT  288
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCGCTG-AGCCACTGGAAAGTCAGCAATGTTCTTCAGTAGGAATGGCCT  290

seq1  GTAATTCTAGAACCTGCCTCAGTGATTTCCTGGAATATTAGTCGATTGAT  338
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTAGAACCTGCCTCAGTGATTTCCTGGAATATTAGTCGATTGAT  340

seq1  -AATCTTTTCACTGAACCAGAATAGT-AAGGGTGTGTGTTACATGTCTGA  386
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATCTTTTCACTGAACCAGAATAGTAAAGGGTGTGTGTTACATGTCTGA  390

seq1  ATGCATGCATTTTGAACTTGTGCAAGTTTATGT-ACATGTGTGCATGCCT  435
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGCATGCATTTTGAACTTGTGCAAGTTTATGTAACATGTGTGCATGCCT  440

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATATACATGTGTGC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATATACATGTGTGC  490

seq1  ATAGCC-TTTGAAATGTGTGAGTTTGTGTGCATGTGCATATGTGAGTGTG  534
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTTTGAAATGTGTGAGTTTGTGTGCATGTGCATATGTGAGTGTG  540

seq1  GTGTAAATGCTAAAAGTCATGTCATGTGTCTTCCTTAATTCCTGTCCCCT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATGCTAAAAGTCATGTCATGTGTCTTCCTTAATTCCTGTCCCCT  590

seq1  TTAGTTTTAGAGACAGTGTCTCTCACTGAATCTGGAGCCTGCTGGCTCTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTAGAGACAGTGTCTCTCACTGAATCTGGAGCCTGCTGGCTCTT  640

seq1  TTCCATTGCCTGGCT-AATGAGTCCTGGAATCTTCCTGTCTCCACTTCTC  683
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCCATTGCCTGGCTAAATGAGTCCTGGAATCTTCCTGTCTCCACTTCTC  690

seq1  CAAGTGTTAGATTATGTTCATGCCCCTGTGCCCAGCTTGAGTGTGGAGGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTAGATTATGTTCATGCCCCTGTGCCCAGCTTGAGTGTGGAGGA  740

seq1  TATGAAATCAGGTCTTTGTGTGCACAGCAAGAAGTTACTGACGGAGTCAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATCAGGTCTTTGTGTGCACAGCAAGAAGTTACTGACGGAGTCAT  790

seq1  CTTCGTAGAAGAAAGGCTGAGGGGCTTTGGCAACATTACTTTGGGCCTCT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTAGAAGAAAGGCTGAGGGGCTTTGGCAACATTACTTTGGGCCTCT  840

seq1  TCAGAACCTAAGTCTACGATCCTTCACCAGAATTTGCCTAGTGGATAGAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCTAAGTCTACGATCCTTCACCAGAATTTGCCTAGTGGATAGAG  890

seq1  AAACACACACTCTGCTCTTTTTGTTTTAGTAAAGCAAGGCTTTGTGAAAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACTCTGCTCTTTTTGTTTTAGTAAAGCAAGGCTTTGTGAAAG  940

seq1  CCAGGCTCTACATTTGATGCATCTGTAGATGGTCCTTATGTAATCAAGGC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCTACATTTGATGCATCTGTAGATGGTCCTTATGTAATCAAGGC  990

seq1  ATGTACACATTAGGCAAAGCCTGGCTCATTTCAACTGCCAAATCCAATGC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACATTAGGCAAAGCCTGGCTCATTTCAACTGCCAAATCCAATGC  1040

seq1  AGTAAAACCAGGACTTTCGTTCAAGATGTCTTCCCATATTAACAAAAGAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCAGGACTTTCGTTCAAGATGTCTTCCCATATTAACAAAAGAA  1090

seq1  CAGTGAACCCCAGAGTGTTGCTTCCGTCTCATTGGCTGGTCTCTGGCACA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACCCCAGAGTGTTGCTTCCGTCTCATTGGCTGGTCTCTGGCACA  1140

seq1  GTCACGGCTGCCCGTGGCTCACAGGGCTTCAGAATTC  1170
      |||||||||||||||||||||||||||||||||||||
seq2  GTCACGGCTGCCCGTGGCTCACAGGGCTTCAGAATTC  1177