BAC Information

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BAC

Clone NameB6Ng01-025E10
Chromosome7 (Build37)
Map Location 16,086,486 - 16,087,386
singlet/doubletsinglet
Overlap geneLOC100042762
Upstream geneB430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921
Downstream geneObox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E10.bB6Ng01-025E10.g
ACCDH856673DH856674
length8911,054
definitionDH856673|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E10, 5' end.DH856674|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggtgaggggagatccttgatggtctaaactcaggaggatagc
tgacatccacatgtctctggcacacagaatctggactggcaccgaaatca
agaacttctccaccactgcaggaagtaggcctatagtgaggtccacttcc
aattctccgcgggagttgtgaactcttccgacattctttagctcgtctgt
tcttgaaccaggtctggaaaacaaaggagacatcagaggaatacctgatt
gcccctaacgggaccacaggttgaagcctttagatgggaagtgtttttat
agccatagaaactgcatgaggcataaacatagaagtctgatgctctaaat
cccaaagagatcgcataaaggtatgatgtatatgacttggcaccaaaatc
tggggaagattcatgtaatgtgtcctgtgtcttaatataaaccgtggtgt
atgggtctcaaagaccccgcaggaaaacaatcttgacccaaaatggccaa
ggcaaagcgctactgtcctttctttcattctttttgagaatgtgtttctc
tgtgcatgcttggctctcatgaaatcgctctgaataatatgcttgtctca
cgctcacaaaaataaaactgcctcttcctcacaagagcaaagaatcaagt
actcatcctcccctggccagtccttattctttggattctacaaagacact
gatcctaaagtgatcttttataatccacagcatttatatctgaaagactt
gaccaatgtactttcattgtgaaaaacactctgaccaatactttaaactt
tgtcatgccatttctacctaaatgggcccctcattgttacatatttgatg
ataaccttgataactgggattctaactactgactattacaa
gaattctcacctgaaaatacagaaaggctgagaaaaacctgaaaaaaatg
ttcaacttccttaatcatcagagaaatgcaaatcagaacaatcctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaaaactcctccattgttggtg
tgatggcaagcttgtacaagcactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggattctgcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctctgctat
gttcatagcagccttatttataatagccagaagctggaaagaacccatgt
gctcctcaacagaggaatgaatacaaaaattttggtacatttacacaatg
gagtactactcagctattaaaaagaatgaattacgaaattcctaggcaaa
tggttggacctggagggcttcatcctgagtgaggtaacccaatcacaaaa
gaactcaatgaaatatactcactgataagtggatattagcccagaaactt
agtatagcgagatataaggtacaaggtgcaaaacacatgaaaacgaagaa
gaacgaagaccaaagtgtggacacagtgcccctttcttataaatgggaac
aaaacacccatggaaggagttacagagaaaaagtttggagctgtgacgaa
aggatggaccatctagagactgcatatgcgggatcaccccataatcagct
tcaaactctgacacattcatacactaacaggatattgctgaatgaaccca
gatattgctgtctcatgttgagactatggcgggacttagcaacacagaag
tggatgctcaaatccagtattggatgattacaagggctccaatggttgag
cttaaaaagtacccatgagctaaagtgttcttcatctttcagtggaacaa
ctttatgaactaatcagtaccccgagctctgaccttagctctaattatcc
aatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16086486_16087386
seq2: B6Ng01-025E10.b_33_923 (reverse)

seq1  TTGTAATAGCCAGGAGCTAGAATCCCAGTTTCTCAGGGTTATCATCAACT  50
      ||||||||| ||| || ||||||||||| || ||| |||||||||||| |
seq2  TTGTAATAGTCAGTAGTTAGAATCCCAG-TTATCAAGGTTATCATCAAAT  49

seq1  ATCCAGCAATTGTGGGGCCCATTTAAGATATAAAAGGCATGACATAAATT  100
      ||  | ||| || ||||||||||| || || ||| ||||||||| || ||
seq2  ATGTAACAA-TGAGGGGCCCATTT-AGGTAGAAATGGCATGACA-AAGTT  96

seq1  AAAAGTATTGGTAAGAATTTTTTTTCTCAATAGAAAGTACACTGGTCAAG  150
       ||||||||||| || | | |||||| |||| ||||||||| ||||||||
seq2  TAAAGTATTGGTCAG-AGTGTTTTTCACAAT-GAAAGTACATTGGTCAAG  144

seq1  TCTTTTACAATATAAATGCTCTGGATTATAACAAGATCAGTTGTAGGACC  200
      ||||| |  ||||||||||| |||||||||| ||||||| || ||||| |
seq2  TCTTTCA-GATATAAATGCTGTGGATTATAA-AAGATCACTT-TAGGATC  191

seq1  AGTGTCTTTGTAGAAACCAAAGAATCTGGACTGGCCAGGGGAGGATGAGT  250
      ||||||||||||||| |||||||||  |||||||||||||||||||||||
seq2  AGTGTCTTTGTAGAATCCAAAGAATAAGGACTGGCCAGGGGAGGATGAGT  241

seq1  ACTTTATTCCTAGCACCTGAGAGGAAGAGGCAGTTCTATCTCTGTGAGCC  300
      |||| |||| | || | || ||||||||||||||| ||| | ||||||| 
seq2  ACTTGATTCTTTGCTCTTGTGAGGAAGAGGCAGTTTTATTTTTGTGAGCG  291

seq1  TGAGACAAGCATATTCTTCAGAGCGATTTCTATGTGAGCCAAGCATGCAC  350
      ||||||||||||||| |||||||||||||| ||| |||||||||||||||
seq2  TGAGACAAGCATATTATTCAGAGCGATTTC-ATGAGAGCCAAGCATGCAC  340

seq1  AGAGAAACACATTCTCAAAAAAAATGAAAGAAAGGACAGTAGCGCTTTGC  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGAAACACATTCTCAAAAAGAATGAAAGAAAGGACAGTAGCGCTTTGC  390

seq1  CTTGACCATTTTGGGTCATGATTATTTTCCTGCAGGGTCTTAGAGACCCA  450
      |||| ||||||||||||| |||| ||||||||| ||||||| ||||||||
seq2  CTTGGCCATTTTGGGTCAAGATTGTTTTCCTGCGGGGTCTTTGAGACCCA  440

seq1  TACACCACGGCTTCTACTAAGACACAGGACACACTACCTGAATCTTCCCC  500
      |||||||||| || || |||||||||||||||| ||| ||||||||||||
seq2  TACACCACGGTTTATATTAAGACACAGGACACATTACATGAATCTTCCCC  490

seq1  AGATTTTGGTGCCAAGTCATATACATCCTACCTTACTGCGATCTCTTTGG  550
      ||||||||||||||||||||||||||| ||||||  ||||||||||||||
seq2  AGATTTTGGTGCCAAGTCATATACATCATACCTTTATGCGATCTCTTTGG  540

seq1  GATTTAGAGCATCAGACTTCTCTGTTTATGCCTCATGCAGTTTCTATGGC  600
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATTTAGAGCATCAGACTTCTATGTTTATGCCTCATGCAGTTTCTATGGC  590

seq1  TATAAAAACACTTCCCATCTAAAGGCTTCAACCTGTGGTCCCGTTAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACACTTCCCATCTAAAGGCTTCAACCTGTGGTCCCGTTAGGGG  640

seq1  CAATCAGGTATTCCTCTGATGTCTCCTTTGTTTTCCAGACCTGGTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGTATTCCTCTGATGTCTCCTTTGTTTTCCAGACCTGGTTCAAG  690

seq1  AACAGACGAGCTAAAGAATGTCGGAAGAGTTCACAACTCCCGCGGAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACGAGCTAAAGAATGTCGGAAGAGTTCACAACTCCCGCGGAGAAT  740

seq1  TGGAAGTGGACCTCACTATAGGCCTACTTCCTGCAGTGGTGGTGAAGTTC  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGAAGTGGACCTCACTATAGGCCTACTTCCTGCAGTGGTGGAGAAGTTC  790

seq1  CTGATTTCGGTGCCAGTCCAGATTCTGTGTGCCAGAGACATGTGGATGTC  850
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCGGTGCCAGTCCAGATTCTGTGTGCCAGAGACATGTGGATGTC  840

seq1  AGCTATCCTCCTGAGTTTAGACCATCAAGGATCTCCCCTCACCAGGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCTCCTGAGTTTAGACCATCAAGGATCTCCCCTCACCAGGAATT  890

seq1  C  901
      |
seq2  C  891