BAC Information

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BAC

Clone NameB6Ng01-025G17
Chromosome7 (Build37)
Map Location 53,410,579 - 53,566,826
singlet/doubletdoublet
Overlap geneAbcc8, Ush1c, Otog
Upstream genePih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11
Downstream geneMyod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025G17.bB6Ng01-025G17.g
ACCDH856776DH856777
length7181,099
definitionDH856776|Mus musculus domesticus DNA, BAC clone: B6Ng01-025G17, 5' end.DH856777|Mus musculus domesticus DNA, BAC clone: B6Ng01-025G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,410,579 - 53,411,295)(53,565,700 - 53,566,826)
sequence
gaattctgtcttgtcttaaatggccacagggtgcctgctcttggacacaa
ttgcactgcacttcagctgcaaagcctttaatccgtcgtcgtgttaagct
tggcttgcttttgtttgtgggtcaggttttctgagagcgtgggtgttttc
tgtgtcttttctgaggtttatatacagcagggggaacgctggaaataatg
gtgatatttttggacaaatttatgcactttctatggactttctggctacg
tgaaactaagccttagaggctagccagcaactttcacaggcatgaataac
ctgttaaataaagcaacacttacatacgtgtgatggtggtgtgtgtgtgt
gtgtgcacgtgcatgcataatttaggaattttgcttggtaacttacaggt
tttcatctatgagggcacattttctgtaagtaactttctggaaatctttt
aaaggaaagaggtcttttaggtctacttcatttccataatgtatgctgtc
atttccttcttgtagcacatgaattaatctctctggttaatgtaaaagat
tcagtttgattaaaaaaaaaaacaactacaggctgatatattaaaaaccc
atttggggactcttttagcataattggaaaatactgggcttctgtgtgat
ttatgacacacacataggaagcagatctgatgacaagactatccaaccca
caaaattggctgtggtgg
gccagcatgacatcctcagagatgcttggaagacttcttgcagtttattg
atacatgaagaagatacagaagagtcacagagacaaagcggatgtaggga
ccatctcgacacaggacctttaccccatggggccgtcagaacagtgctgg
gacctgaacagcagcaggtcatgacctttgagacccagtagcacaaagca
gtgcagaaaggaggggatctgcagagtggcttgtggacaggagctctgat
cctggctttagggaagacactttggtttggagacaaggctctgacggaca
ctcggggccacctgggttgcaaactcacagggctgcattttcacctacag
acattctccaccaacacagtcccaggcagcgctgagccaccacctaacac
agtaagacctagtgcagatacacttttcacatgcttggagaaaagggaca
gagctttaggctggaagtgccagctgtgtactccagaactgcttggaggg
ttgggctgtccagcaccctctgggattggcacccaggccctcactgagaa
gcctatccttcatgtatctcaaacctggctcaatggtgagcatgtgacac
acagaggcacagacctggacctgctcttctagataccagaatgtcaggaa
actctctgaggcttgaggagtctagagccacctgctcagtcacagcatgg
tctcacagatcttcatgggcatccctgagccccaagctcaccctcttcac
ttcaaggagttctagacctcttgagacagtcagaaatgttagttaaatcc
cctttccttatattatgggttttccattgttaagagggacaagaaagaag
caggccaccaaatcttaaccctaagccagcattgggttctgctttgggtg
cagtgtatcagaaaccttggcccctccccctagagtcctggccagagacc
cagattgatcaggcttcagctcctgggctacagcttcctcctgacctcag
catgtaagtggatcccaaagcctgagcatgcactcttggccagtatgact
ctgagaggaacagatggcaggtgggcctatttctagtccctgtggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53410579_53411295
seq2: B6Ng01-025G17.b_47_764

seq1  GAATTCTGTCTTGTCTTAAATGGCCACAGGGTGCCTGCTCTTGGACACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTGTCTTAAATGGCCACAGGGTGCCTGCTCTTGGACACAA  50

seq1  TTGCACTGCACTTCAGCTGCAAAGCCTTTAATCCGTCGTCGTGTTAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGCACTTCAGCTGCAAAGCCTTTAATCCGTCGTCGTGTTAAGCT  100

seq1  TGGCTTGCTTTTGTTTGTGGGTCAGGTTTTCTGAGAGCGTGGGTGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTTTTGTTTGTGGGTCAGGTTTTCTGAGAGCGTGGGTGTTTTC  150

seq1  TGTGTCTTTTCTGAGGTTTATATACAGCAGGGGGAACGCTGGAAATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTTTCTGAGGTTTATATACAGCAGGGGGAACGCTGGAAATAATG  200

seq1  GTGATATTTTTGGACAAATTTATGCACTTTCTATGGACTTTCTGGCTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTTTTGGACAAATTTATGCACTTTCTATGGACTTTCTGGCTACG  250

seq1  TGAAACTAAGCCTTAGAGGCTAGCCAGCAACTTTCACAGGCATGAATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAGCCTTAGAGGCTAGCCAGCAACTTTCACAGGCATGAATAAC  300

seq1  CTGTTAAATAAAGCAACACTTACATACGTGTGATGGTGGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAATAAAGCAACACTTACATACGTGTGATGGTGGTGTGTGTGTGT  350

seq1  GTGTGCACGTGCATGCATAATTTAGGAATTTTGCTTGGTAACTTACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACGTGCATGCATAATTTAGGAATTTTGCTTGGTAACTTACAGGT  400

seq1  TTTCATCTATGAGGGCACATTTTCTGTAAGTAACTTTCTGGAAATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTATGAGGGCACATTTTCTGTAAGTAACTTTCTGGAAATCTTTT  450

seq1  AAAGGAAAGAGGTCTTTTAGGTCTACTTCATTTCCATAATGTATGCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGAGGTCTTTTAGGTCTACTTCATTTCCATAATGTATGCTGTC  500

seq1  ATTTCCTTCTTGTAGCACATGAATTAATCTCTCTGGTTAATGTAAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTCTTGTAGCACATGAATTAATCTCTCTGGTTAATGTAAAAGAT  550

seq1  TCAGTTTGATTAAAAAAAAAAACAACTACAGGCTGATATATTAAAAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGATTAAAAAAAAAAACAACTACAGGCTGATATATTAAAAACCC  600

seq1  ATTTGGGGACTCTTTTAGCATAATTGGAAAATACTGGGCTTCTGTGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGACTCTTTTAGCATAATTGGAAAATACTGGGCTTCTGTGTGAT  650

seq1  TTATGACACACACATAGGAAGCAGATCTGATGACAAGACTATCCAA-CCA  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTATGACACACACATAGGAAGCAGATCTGATGACAAGACTATCCAACCCA  700

seq1  CAAAATTGGCTGTGGTGG  717
      ||||||||||||||||||
seq2  CAAAATTGGCTGTGGTGG  718

seq1: chr7_53565700_53566826
seq2: B6Ng01-025G17.g_78_1176 (reverse)

seq1  TAATCCACAAGGGACTAG-AATAGGCCCCACTTGCCCATCCTGGCTCTCT  49
      || ||||| ||||||||| |||||| ||||| || ||||     || |  
seq2  TATTCCAC-AGGGACTAGAAATAGG-CCCACCTG-CCAT-----CTGTTC  42

seq1  CTCTCTGAGTCCTTTTACATGCACATAGGAAAGTGCCATTGCTCAGGGCT  99
      ||||| |||||    ||| ||  ||    | |||||   ||||||||   
seq2  CTCTCAGAGTC---ATAC-TGGCCA----AGAGTGC--ATGCTCAGG--C  80

seq1  TTTGGGATCCAACTCTACATGGCTTGAGGTCAGGAGGGAAGCTGTAGGCC  149
      |||||||||| ||| ||||||   ||||||||||| |||||||||| |||
seq2  TTTGGGATCC-ACT-TACATG--CTGAGGTCAGGA-GGAAGCTGTA-GCC  124

seq1  CAGGAGCTGAAGGCCTGATCCATCTGTGTCTCTGGCCAGGACTTCTAGGG  199
      ||||||||||| |||||||| ||||| ||||||||||||||| |||||||
seq2  CAGGAGCTGAA-GCCTGATCAATCTGGGTCTCTGGCCAGGAC-TCTAGGG  172

seq1  GGAGGGGCCAAGGTTTCCTGATACACTGCAACCAAAGCAGAACCCAATGC  249
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GGAGGGGCCAAGGTTT-CTGATACACTGCACCCAAAGCAGAACCCAATGC  221

seq1  TGGCTTAGGGTTAAGATTTGGTGGCCTGCTTCTTTCTTGTCCCTCTTAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGGGTTAAGATTTGGTGGCCTGCTTCTTTCTTGTCCCTCTTAAC  271

seq1  AATGGAAAACCCATAATATAAGGAAAGGGGATTTAACTAACATTTCTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAACCCATAATATAAGGAAAGGGGATTTAACTAACATTTCTGAC  321

seq1  TGTCTCAAGAGGTCTAGAACTCCTTGAAGTGAAGAGGGTGAGCTTGGGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAGAGGTCTAGAACTCCTTGAAGTGAAGAGGGTGAGCTTGGGGC  371

seq1  TCAGGGATGCCCATGAAGATCTGTGAGACCATGCTGTGACTGAGCAGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGCCCATGAAGATCTGTGAGACCATGCTGTGACTGAGCAGGTG  421

seq1  GCTCTAGACTCCTCAAGCCTCAGAGAGTTCCCTGACATTCTGGTATCTAG  499
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTCTAGACTCCTCAAGCCTCAGAGAGTTTCCTGACATTCTGGTATCTAG  471

seq1  AAGAGCAGGTCCAGGTCTGTGCCTCTGTGTGTCACATGCTCACCATTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGTCCAGGTCTGTGCCTCTGTGTGTCACATGCTCACCATTGAG  521

seq1  CCAGGTTTGAGATACATGAAGGATAGGCTTCTCAGTGAGGGCCTGGGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTGAGATACATGAAGGATAGGCTTCTCAGTGAGGGCCTGGGTGC  571

seq1  CAATCCCAGAGGGTGCTGGACAGCCCAACCCTCCAAGCAGTTCTGGAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCAGAGGGTGCTGGACAGCCCAACCCTCCAAGCAGTTCTGGAGTA  621

seq1  CACAGCTGGCACTTCCAGCCTAAAGCTCTGTCCCTTTTCTCCAAGCATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGCACTTCCAGCCTAAAGCTCTGTCCCTTTTCTCCAAGCATGT  671

seq1  GAAAAGTGTATCTGCACTAGGTCTTACTGTGTTAGGTGGTGGCTCAGCGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGTATCTGCACTAGGTCTTACTGTGTTAGGTGGTGGCTCAGCGC  721

seq1  TGCCTGGGACTGTGTTGGTGGAGAATGTCTGTAGGTGAAAATGCAGCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGACTGTGTTGGTGGAGAATGTCTGTAGGTGAAAATGCAGCCCT  771

seq1  GTGAGTTTGCAACCCAGGTGGCCCCGAGTGTCCGTCAGAGCCTTGTCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTGCAACCCAGGTGGCCCCGAGTGTCCGTCAGAGCCTTGTCTCC  821

seq1  AAACCAAAGTGTCTTCCCTAAAGCCAGGATCAGAGCTCCTGTCCACAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGTGTCTTCCCTAAAGCCAGGATCAGAGCTCCTGTCCACAAGC  871

seq1  CACTCTGCAGATCCCCTCCTTTCTGCACTGCTTTGTGCTACTGGGTCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCAGATCCCCTCCTTTCTGCACTGCTTTGTGCTACTGGGTCTCA  921

seq1  AAGGTCATGACCTGCTGCTGTTCAGGTCCCAGCACTGTTCTGACGGCCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGACCTGCTGCTGTTCAGGTCCCAGCACTGTTCTGACGGCCCC  971

seq1  ATGGGGTAAAGGTCCTGTGTCGAGATGGTCCCTACATCCGCTTTGTCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTAAAGGTCCTGTGTCGAGATGGTCCCTACATCCGCTTTGTCTCT  1021

seq1  GTGACTCTTCTGTATCTTCTTCATGTATCAATAAACTGCAAGAAGTCTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTTCTGTATCTTCTTCATGTATCAATAAACTGCAAGAAGTCTTC  1071

seq1  CAAGCATCTCTGAGGATGTCATGCTGGC  1127
      ||||||||||||||||||||||||||||
seq2  CAAGCATCTCTGAGGATGTCATGCTGGC  1099