BAC Information

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BAC

Clone NameB6Ng01-026H09
Chromosome7 (Build37)3 (Build37)
Map Location 5,749,654 - 5,750,80941,059,188 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUbe2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637
Downstream geneV1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026H09.bB6Ng01-026H09.g
ACCDH857498DH857499
length1,131755
definitionDH857498|Mus musculus domesticus DNA, BAC clone: B6Ng01-026H09, 5' end.DH857499|Mus musculus domesticus DNA, BAC clone: B6Ng01-026H09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,749,654 - 5,750,809)(41,059,188 - 41,059,737)
sequence
gaattcaatcatggagccagcatgggtctgacctaggacttctgcaaaat
aaattagaattagaatttttgtagaactcctaagataggaagtggggctg
tctctgacattttgcctaccctgaggatccacatactcctactagactac
ctcatccagccttgataggaataacgtgtgaaatagttcatttgctaaga
tcagtttctatcatgcacaaaaaaccaaattctattcccagcaccctctt
gacaaataacaactattgataactacaatttcagagggcctgatgccttt
ttatggctttcatgagcactgcacacatgtggtacactgacacacagtat
atcatatataaacgtaaaatataaataaataaatctttttttggatctgg
ctcttgagtttttactttttgtctttgaaatgcagaatgaataaccttga
ttcataacttacctgtttgtcttttctaatttctcctgacaattttcatg
actttattttctattgctttctagtattcagccatttcaatatttaagtt
aatggtgttaaaacatgtgaaaattagtatttgcttttgcattgtactat
gagctcaaaagactgatattttacttagaatcattgttaggaacttcata
gagtatttagtaatgacatggtaattctgtatgagttaaggaaggtcaca
cactattataagctatgtagctgtcaccatgaacaaacaaagatgggtag
attccaggccttatatattaataggtggcacatatactgagcaaaattct
ctgctaaaaacatggacattttctacttagtaacaatattccttaaaaaa
aaaaggaggttgggcaactcagcccccctggttaaaggtcatttcttcat
agatccatgtcaatggctttgactcctagagcgaaaacatattactactt
tgaaaaatactcgtaccatctgtaatgatttgaagtactggcacttcaaa
ttttaaggattgaaggagggggcttactagaagtgaggcccctttggaat
atgtgtggcattttggaggagtcactggggcatgacatgaatcctctcta
accacatggagtgtcttctgctagaagactt
gaattctttgtttagttctgagccccattttttatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggatagataaagatccttttccaatctgttggtggcctt
tttgtcttagtgacggagtcttttgccttatagaagctttgcagttttat
aagatcccatttgtcaattgtcgatcttacagcacaagccattctgttct
attcaggaatttttcccctgtgcccatatctttgaggctttcccccactt
tctcctctataagtttcagtgtctctggttttatgtggagttcctagatc
cacttagacttgaccttagtaaaaggagataggaatggatcaatttgcat
tcttctacatgataaccaccagttgtgtcagtaccatttgttgaaaatgc
tgtcttttttccacttgatggttttagctcccttgtcaaagatcaagtga
tcataggtgtgtgggttcatttctgggtcttcaattctattccattggtc
cacttctctgttgctataccagtaccgtgcagtttttatcacaattgctc
tgtagtagagctttaggtcagcatggtgattccatcagaggttcttttat
ccttgagaagagtttttgctatcctaggttttttgtattccagatgattt
gcatattgctcctctattcgttgaagaattgagttggaatttgatgggat
gcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5749654_5750809
seq2: B6Ng01-026H09.b_49_1179 (reverse)

seq1  AAGTCTTCTAGCAGAAGACAGACTCCCATGTGGTTAGGAGGAGGATCTCA  50
      |||||||||||||||||||  ||| ||||||||||||   |||||| |||
seq2  AAGTCTTCTAGCAGAAGAC--ACT-CCATGTGGTTAG--AGAGGAT-TCA  44

seq1  TTGTCCATGCCCACAGTGACTTCCTCCAAAATGCCCACACATATTCCAAA  100
       ||| ||||||| ||||||| |||||||||||| ||||||||||||||||
seq2  -TGT-CATGCCC-CAGTGAC-TCCTCCAAAATG-CCACACATATTCCAAA  89

seq1  GGGGCCTCACTTCCTAGTAGCCCCACTTCCTTCAAAATCCTTAAAAATTT  150
      |||||||||||| ||||||  ||| | ||||||  |||||||||||  ||
seq2  GGGGCCTCACTT-CTAGTAAGCCC-CCTCCTTC--AATCCTTAAAA--TT  133

seq1  TGAAGTGCCAGGTACTTCAAAATCATTACAGATGGTACGAGTTATTTATT  200
      |||||||||| ||||||| |||||||||||||||||||||| ||||| ||
seq2  TGAAGTGCCA-GTACTTC-AAATCATTACAGATGGTACGAG-TATTT-TT  179

seq1  CAAAGGTAGTAATATGTTTTCGCTCTAGGAGTCACAAGCCATTGACATGG  250
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAA-GTAGTAATATGTTTTCGCTCTAGGAGTCA-AAGCCATTGACATGG  227

seq1  ATCTAGTGAAGAAATGACCTTTAACCAGGGGGGCTGAGTTGCCCAACCTC  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTA-TGAAGAAATGACCTTTAACCAGGGGGGCTGAGTTGCCCAACCTC  276

seq1  CTTTTTTTTTTTAAGGAATATTGTTACTAAGTAGAAAATGTCCATGTTTT  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTTTTTTTTTAAGGAATATTGTTACTAAGTAGAAAATGTCCATGTTTT  325

seq1  TAGCAGAGAATTTTGCTCAGTATATGTGCCACCTATTAATATATAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGAATTTTGCTCAGTATATGTGCCACCTATTAATATATAAGGCC  375

seq1  TGGAATCTACCCATCTTTGTTTGTTCATGGTGACAGCTACATAGCTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTACCCATCTTTGTTTGTTCATGGTGACAGCTACATAGCTTATA  425

seq1  ATAGTGTGTGACCTTCCTTAACTCATACAGAATTACCATGTCATTACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGTGACCTTCCTTAACTCATACAGAATTACCATGTCATTACTAA  475

seq1  ATACTCTATGAAGTTCCTAACAATGATTCTAAGTAAAATATCAGTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTATGAAGTTCCTAACAATGATTCTAAGTAAAATATCAGTCTTTT  525

seq1  GAGCTCATAGTACAATGCAAAAGCAAATACTAATTTTCACATGTTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATAGTACAATGCAAAAGCAAATACTAATTTTCACATGTTTTAAC  575

seq1  ACCATTAACTTAAATATTGAAATGGCTGAATACTAGAAAGCAATAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACTTAAATATTGAAATGGCTGAATACTAGAAAGCAATAGAAAA  625

seq1  TAAAGTCATGAAAATTGTCAGGAGAAATTAGAAAAGACAAACAGGTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCATGAAAATTGTCAGGAGAAATTAGAAAAGACAAACAGGTAAGT  675

seq1  TATGAATCAAGGTTATTCATTCTGCATTTCAAAGACAAAAAGTAAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCAAGGTTATTCATTCTGCATTTCAAAGACAAAAAGTAAAAACT  725

seq1  CAAGAGCCAGATCCAAAAAAAGATTTATTTATTTATATTTTACGTTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCAGATCCAAAAAAAGATTTATTTATTTATATTTTACGTTTATA  775

seq1  TATGATATACTGTGTGTCAGTGTACCACATGTGTGCAGTGCTCATGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATACTGTGTGTCAGTGTACCACATGTGTGCAGTGCTCATGAAAG  825

seq1  CCATAAAAAGGCATCAGGCCCTCTGAAATTGTAGTTATCAATAGTTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAAGGCATCAGGCCCTCTGAAATTGTAGTTATCAATAGTTGTTA  875

seq1  TTTGTCAAGAGGGTGCTGGGAATAGAATTTGGTTTTTTGTGCATGATAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAGAGGGTGCTGGGAATAGAATTTGGTTTTTTGTGCATGATAGA  925

seq1  AACTGATCTTAGCAAATGAACTATTTCACACGTTATTCCTATCAAGGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATCTTAGCAAATGAACTATTTCACACGTTATTCCTATCAAGGCTG  975

seq1  GATGAGGTAGTCTAGTAGGAGTATGTGGATCCTCAGGGTAGGCAAAATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGTAGTCTAGTAGGAGTATGTGGATCCTCAGGGTAGGCAAAATGT  1025

seq1  CAGAGACAGCCCCACTTCCTATCTTAGGAGTTCTACAAAAATTCTAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGCCCCACTTCCTATCTTAGGAGTTCTACAAAAATTCTAATTC  1075

seq1  TAATTTATTTTGCAGAAGTCCTAGGTCAGACCCATGCTGGCTCCATGATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTTTGCAGAAGTCCTAGGTCAGACCCATGCTGGCTCCATGATT  1125

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1131

seq1: chr3_41059188_41059737
seq2: B6Ng01-026H09.g_69_617 (reverse)

seq1  GACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGG  50
      |||||||||||||||||||||||| |||||| ||| ||||||||||||| 
seq2  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGA  50

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACA  100
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TCACTTGATCTTTGACAAGGGAGCTAAAACCATCAAGTGGAAAAAAGACA  100

seq1  GCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150
      |||||||||||||||||| ||| |||||||||| ||||||||||||||||
seq2  GCATTTTCAACAAATGGTACTGACACAACTGGTGGTTATCATGTAGAAGA  150

seq1  ATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200
      |||| |||||||||| |||||||||||| |||||||||||| ||||||||
seq2  ATGCAAATTGATCCATTCCTATCTCCTTTTACTAAGGTCAAGTCTAAGTG  200

seq1  GATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCAT  300
      |||||||| |||||||  ||||||||| ||||||||||||||||||| ||
seq2  AAGTGGGGGAAAGCCTCAAAGATATGGGCACAGGGGAAAAATTCCTGAAT  300

seq1  AGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCT  350
      ||||||| |||||||||||||||||||| || ||| ||||||||||| ||
seq2  AGAACAG-AATGGCTTGTGCTGTAAGATCGACAATTGACAAATGGGATCT  349

seq1  CATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  400
       || ||||||||||||||||  |||||||||||| |||||| ||||||||
seq2  TATAAAACTGCAAAGCTTCTATAAGGCAAAAGACTCCGTCACTAAGACAA  399

seq1  AAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  449
      ||||| |||||||||||||| |||||||||||| ||||||||||||||||
seq2  AAAGGCCACCAACAGATTGGAAAAGGATCTTTATCTATCCTAAATCAGAT  449

seq1  AGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAG  499
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  AGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAG  499

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAAT  549
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  AAAATCAAATAACCCCA-TAAAAAATGGGGCTCAGAACTAAACAAAGAAT  548

seq1  T  550
      |
seq2  T  549