BAC Information

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BAC

Clone NameB6Ng01-026J02
Chromosome7 (Build37)
Map Location 3,057,702 - 3,219,645
singlet/doubletdoublet
Overlap geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503
Upstream genenone
Downstream geneNlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J02.bB6Ng01-026J02.g
ACCDH857576DH857577
length4331,081
definitionDH857576|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J02, 5' end.DH857577|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,057,702 - 3,058,140)(3,218,558 - 3,219,645)
sequence
actcgcacaaccggatccttctacagcaaagcttttattgcttcaacata
aggaagaccccgaacctggaaaatggtgctgcttatatagcctgcagcgt
gagggttcagcacctgatgtggcatgacagcacctgattacttgcttgcc
catcaccccattactacgccctgagatgggcagagactgggcatgaattt
actcttgcacttgcgcataaggcttgtttactagttaggcacagtggaag
ccagtgccatcttataatgacgattgctcacggcacggctctccacatta
cactgccctgagccagctgagccagggcagtaggggtgggtggggggtgc
gcgcacaggtgtgtgcgtgcatgtatgtgcatatgtccctgtctctgtgt
tgttagcacttggtaaacaccgaagaaattctt
gaattcacctccagcacacatacctgtttcaagcaggtaagcgattccag
gttgcagctgcagccggcttttcagacgccatgtacacacagagacaaac
aaaatggatgcactttcccgccaagccgcggagagggcctccactttgat
cgacactgtatgttccaacttccaagacctgaggctcagctcctccgagc
gaggcccatgtgggatcccggctcctttatgaacgcggaaagcctttagt
accgcatgcgcccaagtgttcggactcaaacccacatgtgacacccacct
gcccagaaatgcaaccccagtgaaaacatgacccactaaaacttaattct
tagttcttagccgttttgagttctcaaccggtgacactcaaaacctggcg
gcacttttcttccgatgaaaatccaaaagagcccccagtttgagtatcac
aggctggaggtcaagcttaagaacaatctacaatgcacctggactcacga
ctgccttacatccatccgcgtctcgtggcacccaactgaaccgccctctt
taggataggacccattaaactccaagcctaaacccccacacaggttgtcc
gctcctgtaaaccgatgcgtcagatgcaaagctatgatgttttccccatg
cagtggcacacaaagtggaagcactttctcattcaggctcaagagagggc
ctccactttgatggccgctacataggtgtaacagctccaagcagcgacag
gacgcacatggagcccccaggtaccctacaacgaccacctcagttaccgt
ctactgggcaggatgcccatccctagcctttcgctatactcagtctcatt
cctttcttcgaatccgtactcaccacgctgcagttaacccggaacacgtg
gcaccaggctggtaaatgtgccagatagccgtttctcacccggcggggct
taaactagcgcacttttaagaaaaaaaaaagtgcccccatagtttgagta
cgcagatggaggcgtccagaacgttaaacattacaggaggaagaacgtgg
agaacttaaattcactcactgaggaacctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3057702_3058140
seq2: B6Ng01-026J02.b_43_481

seq1  GAATTCACTCGCACAACCGGATCCTTCTACAGCAAAGCTTTTATTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGCACAACCGGATCCTTCTACAGCAAAGCTTTTATTGCTTC  50

seq1  AACATAAGGAAGACCCCGAACCTGGAAAATGGTGCTGCTTATATAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGGAAGACCCCGAACCTGGAAAATGGTGCTGCTTATATAGCCTG  100

seq1  CAGCGTGAGGGTTCAGCACCTGATGTGGCATGACAGCACCTGATTACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGAGGGTTCAGCACCTGATGTGGCATGACAGCACCTGATTACTTG  150

seq1  CTTGCCCATCACCCCATTACTACGCCCTGAGATGGGCAGAGACTGGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCATCACCCCATTACTACGCCCTGAGATGGGCAGAGACTGGGCAT  200

seq1  GAATTTACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCACAG  250

seq1  TGGAAGCCAGTGCCATCTTATAATGACGATTGCTCACGGCACGGCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGTGCCATCTTATAATGACGATTGCTCACGGCACGGCTCTCC  300

seq1  ACATTACACTGCCCTGAGCCAGCTGAGCCAGGGCAGTAGGGGTGGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACACTGCCCTGAGCCAGCTGAGCCAGGGCAGTAGGGGTGGGTGGG  350

seq1  GGGTGCGCGCACAGGTGTGTGCGTGCATGTATGTGCATATGTCCCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGCGCACAGGTGTGTGCGTGCATGTATGTGCATATGTCCCTGTCT  400

seq1  CTGTGTTGTTAGCACTTGGTAAACAGTGAAGAAACTCTT  439
      |||||||||||||||||||||||||  ||||||| ||||
seq2  CTGTGTTGTTAGCACTTGGTAAACACCGAAGAAATTCTT  439

seq1: chr7_3218558_3219645
seq2: B6Ng01-026J02.g_68_1148 (reverse)

seq1  TCAGGTT------GGAGTGAATTTTAAGTTCTCCACGTTCTTTCCTCCTG  44
      |||||||       ||||||| |||||||||||||||||| |||||||||
seq2  TCAGGTTCCTCAGTGAGTGAA-TTTAAGTTCTCCACGTTC-TTCCTCCTG  48

seq1  GTAAATGTTTTAACG-TCTGGACCGCCT-CATCTTGCGGTACTCAAACTA  92
         |||| ||||||| |||||| ||||| |||| ||| ||||||||||||
seq2  --TAATG-TTTAACGTTCTGGA-CGCCTCCATC-TGC-GTACTCAAACTA  92

seq1  TGGGGGCACTTTTTTTTTTCTTTAAAAAGTGCCGCCTAGTTTTAAGCCCC  142
      ||||||||||||||||||||||  ||||||||   |||| ||||||||||
seq2  TGGGGGCACTTTTTTTTTTCTT--AAAAGTGC--GCTAG-TTTAAGCCCC  137

seq1  GCCGGTTGAGAAAACGGCTATCTGGCACATTTACCAGCCCTGGTGCCACG  192
      ||||| |||| |||||||||||||||||||||||||| ||||||||||||
seq2  GCCGGGTGAG-AAACGGCTATCTGGCACATTTACCAG-CCTGGTGCCACG  185

seq1  TGTTCCGGGTTAACTGCAGCGTGGTGAGTACGGATTCGAAGAAAGGAATG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGGGTTAACTGCAGCGTGGTGAGTACGGATTCGAAGAAAGGAATG  235

seq1  AGACTGAGTATAGCGAAAGGCTAGGGATGGGCATCCTGCCCAGTAGACGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGTATAGCGAAAGGCTAGGGATGGGCATCCTGCCCAGTAGACGG  285

seq1  TAACTGAGGTGGTCGTTGTAGGGTACCTGGGGGCTCCATGTGCGTCCTGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGGTGGTCGTTGTAGGGTACCTGGGGGCTCCATGTGCGTCCTGT  335

seq1  CGCTGCTTGGAGCTGTTACACCTATGTAGCGGCCATCAAAGTGGAGGCCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTTGGAGCTGTTACACCTATGTAGCGGCCATCAAAGTGGAGGCCC  385

seq1  TCTCTTGAGCCTGAATGAGAAAGTGCTTCCACTTTGTGTGCCACTGCATG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAGCCTGAATGAGAAAGTGCTTCCACTTTGTGTGCCACTGCATG  435

seq1  GGGAAAACATCATAGCTTTGCATCTGACGCATCGGTTTACAGGAGCGGAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACATCATAGCTTTGCATCTGACGCATCGGTTTACAGGAGCGGAC  485

seq1  AACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCTATCCTAAAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCTATCCTAAAGA  535

seq1  GGGCGGTTCAGTTGGGTGCCACGAGACGCGGATGGATGTAAGGCAGTCGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGTTCAGTTGGGTGCCACGAGACGCGGATGGATGTAAGGCAGTCGT  585

seq1  GAGTCCAGGTGCATTGTAGATTGTTCTTAAGCTTGACCTCCAGCCTGTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGGTGCATTGTAGATTGTTCTTAAGCTTGACCTCCAGCCTGTGA  635

seq1  TACTCAAACTGGGGGCTCTTTTGGATTTTCATCGGAAGAAAAGTGCCGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAACTGGGGGCTCTTTTGGATTTTCATCGGAAGAAAAGTGCCGCC  685

seq1  AGGTTTTGAGTGTCACCGGTTGAGAACTCAAAACGGCTAAGAACTAAGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGAGTGTCACCGGTTGAGAACTCAAAACGGCTAAGAACTAAGAA  735

seq1  TTAAGTTTTAGTGGGTCATGTTTTCACTGGGGTTGCATTTCTGGGCAGGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTAGTGGGTCATGTTTTCACTGGGGTTGCATTTCTGGGCAGGT  785

seq1  GGGTGTCACATGTGGGTTTGAGTCCGAACACTTGGGCGCATGCGGTACTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCACATGTGGGTTTGAGTCCGAACACTTGGGCGCATGCGGTACTA  835

seq1  AAGGCTTTCCGCGTTCATAAAGGAGCCGGGATCCCACATGGGCCTCGCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTCCGCGTTCATAAAGGAGCCGGGATCCCACATGGGCCTCGCTC  885

seq1  GGAGGAGCTGAGCCTCAGGTCTTGGAAGTTGGAACATACAGTGTCGATCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTGAGCCTCAGGTCTTGGAAGTTGGAACATACAGTGTCGATCA  935

seq1  AAGTGGAGGCCCTCTCCGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGCCCTCTCCGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTT  985

seq1  GTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGCAGCTGCAACCTGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGCAGCTGCAACCTGG  1035

seq1  AATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTC  1081