BAC Information

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BAC

Clone NameB6Ng01-026L06
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,224 - 41,059,73765,684,052 - 65,685,000
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026L06.bB6Ng01-026L06.g
ACCDH857667DH857668
length680944
definitionDH857667|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L06, 5' end.DH857668|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(65,684,052 - 65,685,000)
sequence
gaattctttgtttagctctgagccccattttttgatggggttatttgatt
ttttggagtccacattcttgagttctttatatattttggatattagtctt
ctatctgatttaaaatagttaaagatcctttcccaatctgttggtggcct
ttttatcctacagaagctttgcggtttcatgaggtcccatttgtcaattc
tcgatcttacagcacaagccattgctgttctattcaggaattttccccct
atgcccatatcttcgaggcttttccccactttctcctctataagtttcag
tgtctctggttttatgtgaagttccttgatccacttaaatttgaccttag
tactaggagataggaatggatcgattcgcattcttctacatgataacaac
gagttgtgccaggaccatttattgaaaatgctgtctttcttccactggat
ggttttagctcccttgtcgaagatcaagtgtccataggtgtgtgggttca
tttctgggtcttcaattctattccattggtctacttgtctgtctctatac
cagtaccatgcagtttttatcacaattgctctgtagtaaagctttaagtc
aggcatggtgattccaccagaggttctttatcctggagaagagttttgct
atcctaggtttttgtattccagatgaattg
gaattctcttgcatttcttcatctttctgcatggtcagtactaacatttt
ctctttcattactggatttattagtttgaatatgtttcttaattttgagt
aatttaaaaatttaagacagaacaaccatcatatttggatgtttttaata
gtactctatgtttgttcctattttctctcctctactccttatttaaattc
agtttgcttttgattttcctctctatttatttaacttttatttaaatgga
attacattgtcacaaaattacacaacatgctttgaccgtattctccatac
tcttgttatccctcatttaccttctccatctcattagtttcttaatggaa
tagtgtgaaaaaaatcttccttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttttatttcttttaacatag
cattcacaactctaaattttcctttcagcggtggcttaacttttcccaaa
taccttggtcaacctctattagatgatttcgatactggctgctatgtatg
tcttattctatatattttccatatgttacactaattgacatctcaatgag
ttgtattcatcaagaagagtaggttttgcatggctcatatattgctagag
ttctttaacaaaagattctatatggcactatgtgtaaaagacatttgttt
tgaggttctaggatggaattgtagctactcatgggtacccttgacttaag
gtgggccctcctctattcagggaaagtagtcctcttaggtgagtgtggaa
agaatgcacgtggagtggggaggaaagtaatgggaaaccccagtcagcca
gattagaagatcaccctgcaaagaagaggtgaactgcagttgggatgtat
atatagagatgctattttatatttttcaacatttgtttcaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-026L06.b_43_536 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCACACACCTATGGACACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||| ||||||||||||||||| ||||||| ||||||||||| |||||
seq2  GTGGAAGAAAGACAGCATTTTCAATAAATGGTCCTGGCACAACTCGTTGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||||||||||||||||||| |||||| ||||||||||| ||||||||
seq2  TATCATGTAGAAGAATGCGAATCGATCCATTCCTATCTCCTAGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||| |||||||||||||||||  |||||||||||||||||||||||
seq2  GTCAAATTTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||||||||||||||| |||||||||| || |||||
seq2  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCATAGGGG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
       |||||||||| |||||||||||||||||||||||||||||| |||||| 
seq2  GAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATT  300

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      |||||||||||||||||||||| ||||||||||||               
seq2  GACAAATGGGACCTCATGAAACCGCAAAGCTTCTG---------------  335

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
            || || ||||||| ||||||||||||||||||||||||||| ||
seq2  ------TAGGATAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTAACT  379

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      ||  ||||||||||||  ||||||||||||| |||||| |||||||||||
seq2  ATTTTAAATCAGATAGAAGACTAATATCCAAAATATATAAAGAACTCAAG  429

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      || ||||| |||| |||||||||||||||||| |||||||||||||||||
seq2  AATGTGGACTCCAAAAAATCAAATAACCCCATCAAAAAATGGGGCTCAGA  479

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  494

seq1: chr7_65684052_65685000
seq2: B6Ng01-026L06.g_66_1003 (reverse)

seq1  AAACAAAATTGTTTGAAAAATATATATATATGCATCTCTTATATATTACA  50
      |||||||  || |||||||||||| | ||| ||||||| |||||| ||||
seq2  AAACAAA--TG-TTGAAAAATATA-AAATA-GCATCTC-TATATA-TACA  43

seq1  TCCCAACTGCAGTTTCACCTCTTGCTTTGCAGGGTTGATTCTTCTGATCT  100
      |||||||||||| |||||||||| |||||||||| ||| |||||| ||||
seq2  TCCCAACTGCAG-TTCACCTCTT-CTTTGCAGGG-TGA-TCTTCTAATCT  89

seq1  GGCTGGCTGTGTGTGTCCCATTAC-TTCCTCCCCACTCCACGTGCATTCT  149
      ||||| ||| | || ||||||||| |||||||||||||||||||||||||
seq2  GGCTGACTG-GGGTTTCCCATTACTTTCCTCCCCACTCCACGTGCATTCT  138

seq1  TTCCACACTCACCTAAGAGGACTACCTTCCCTGAATAGAGGAGGGCCCAC  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCCACACTCACCTAAGAGGACTACTTTCCCTGAATAGAGGAGGGCCCAC  188

seq1  CTTAAGTCAAGGGTACCCATGAGTAGCTACAATTCCATCCTAGAACCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCAAGGGTACCCATGAGTAGCTACAATTCCATCCTAGAACCTCA  238

seq1  AAACAAATGTCTTTTACACATAGTGCCATATAGAATCTTTTGTTAAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGTCTTTTACACATAGTGCCATATAGAATCTTTTGTTAAAGAA  288

seq1  CTCTAGCAATATATGAGCCATGCAAAACCTACTCTTCTTGATGAATACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAATATATGAGCCATGCAAAACCTACTCTTCTTGATGAATACAA  338

seq1  CTCATTGAGATGTCAATTAGTGTAACATATGGAAAATATATAGAATAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAGATGTCAATTAGTGTAACATATGGAAAATATATAGAATAAGA  388

seq1  CATACATAGCAGCCAGTATCGAAATCATCTAATAGAGGTTGACCAAGGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAGCAGCCAGTATCGAAATCATCTAATAGAGGTTGACCAAGGTA  438

seq1  TTTGGGAAAAGTTAAGCCACCGCTGAAAGGAAAATTTAGAGTTGTGAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAAAGTTAAGCCACCGCTGAAAGGAAAATTTAGAGTTGTGAATG  488

seq1  CTATGTTAAAAGAAATAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTAAAAGAAATAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  538

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGATTTTTTTCACACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGATTTTTTTCACACTA  588

seq1  TTCCATTAAGAAACTAATGAGATGGAGAAGGTAAATGAGGGATAACAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAAGAAACTAATGAGATGGAGAAGGTAAATGAGGGATAACAAGA  638

seq1  GTATGGAGAATACGGTCAAAGCATGTTGTGTAATTTTGTGACAATGTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGAATACGGTCAAAGCATGTTGTGTAATTTTGTGACAATGTAAT  688

seq1  TCCATTTAAATAAAAGTTAAATAAATAGAGAGGAAAATCAAAAGCAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAAATAAAAGTTAAATAAATAGAGAGGAAAATCAAAAGCAAACT  738

seq1  GAATTTAAATAAGGAGTAGAGGAGAGAAAATAGGAACAAACATAGAGTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAATAAGGAGTAGAGGAGAGAAAATAGGAACAAACATAGAGTAC  788

seq1  TATTAAAAACATCCAAATATGATGGTTGTTCTGTCTTAAATTTTTAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAACATCCAAATATGATGGTTGTTCTGTCTTAAATTTTTAAATT  838

seq1  ACTCAAAATTAAGAAACATATTCAAACTAATAAATCCAGTAATGAAAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAATTAAGAAACATATTCAAACTAATAAATCCAGTAATGAAAGAG  888

seq1  AAAATGTTAGTACTGACCATGCAGAAAGATGAAGAAATGCAAGAGAATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTAGTACTGACCATGCAGAAAGATGAAGAAATGCAAGAGAATTC  938