BAC Information

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BAC

Clone NameB6Ng01-027B23
Chromosome7 (Build37)
Map Location 4,223,757 - 4,347,526
singlet/doubletdoublet
Overlap geneNcr1, Gp6, LOC100041851
Upstream geneNlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801
Downstream geneAtp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B23.bB6Ng01-027B23.g
ACCDH857956DH857957
length993567
definitionDH857956|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B23, 5' end.DH857957|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,223,757 - 4,224,551)(4,346,960 - 4,347,526)
sequence
gaattcagagacaccactgaggaagtcaagactgagacccaggaccaaga
ggtcatgtcatcaaaactctagcagctgcctatacttcccaccagcagat
ggagaaagataaaaccctggataagtacaacatccaaaaagatcaaccct
gcagttggtgctgggcctgtgtggtggcatcctccaccaaccccaaagct
agcttctcaagtttacaactgcaacacaatgatacagtggtgctcacaaa
tactgcccatgcctgcaccactgtgtgtggaactgcaacaagaaccatgg
caatcatcttaccaaaagcaatctacagattcaatggagtccccatcaaa
attccaattcgattcttcatagagttagaaagggcaattctcaaattcat
ttggaataaaaaaaaaaacccaggatagcgaaaacgactcttaacaataa
aagaatttctttggaaatcaccatccctgacctcaatctatactatagag
caatagtgataaaacctgcatggaattggtacagatacagacaggtacat
caatgaggtaaaattgaagacccagaaatgaacccacacagctatggtta
cttgatctttgacaagggagctaaaaccatccaggggaaaaaagacagca
tttttcaacaaatgattttggttcacctcacagtctgcatgtagaagaat
gcagatctatccatttttatctccttgtacaaagctcaagtccaagtgga
tcaaggacctccacctaaaaccagatatgctgaatctaatataagaaaat
gtgtggaagagcctcaaattcataggctggcatgaccacccagttctccc
agagtctagaccaccaactaaaggagtgtacctggaggaatccatggctc
cagatacacatgtagcagagaatggactctctcacagcaatgggagggaa
gactgctttgatgctccagagtagagggatgtttgagcagtgg
cgaacttttgggtttatatccacttatcagtgtgtacatagcgtgtttgt
tcctttgtgactgagttacctcacccaggatgatattttcaagttccatc
catttgcctgtaaatttcatgaagtcattgtttttagtagctgagtagta
ttccactgtgtaaatgcaccatattttgtgtatccatttctctattgagg
gacatctgggatgcttctagtttctggctatcataaatatggctgctatg
aacataatggagcatgtgttcttatttcatgttggagcatcttgtggctc
tattcccaggagtgttatagaagaagaagaaaatgaaaaagaaagagaaa
aagaggaaaaaataaatctttgagaattttgtggggtgtgtttagattac
atatacctttgccccaaatcctttcctttcctctattcactcaactttgt
gttctttaaaaaacgtgtttaaagctatcaagtgcagtttgtgcagccta
tatactcttgggtatgtgaccttccactagattatggtcaactttgtgag
ggaacaccctaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4223757_4224551
seq2: B6Ng01-027B23.b_44_838

seq1  GAATTCAGAGACACCACTGAGGAAGTCAAGACTGAGACCCAGGACCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACACCACTGAGGAAGTCAAGACTGAGACCCAGGACCAAGA  50

seq1  GGTCATGTCATCAAAACTCTAGCAGCTGCCTATACTTCCCACCAGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGTCATCAAAACTCTAGCAGCTGCCTATACTTCCCACCAGCAGAT  100

seq1  GGAGAAAGATAAAACCCTGGATAAGTACAACATCCAAAAAGATCAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGATAAAACCCTGGATAAGTACAACATCCAAAAAGATCAACCCT  150

seq1  GCAGTTGGTGCTGGGCCTGTGTGGTGGCATCCTCCACCAACCCCAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGTGCTGGGCCTGTGTGGTGGCATCCTCCACCAACCCCAAAGCT  200

seq1  AGCTTCTCAAGTTTACAACTGCAACACAATGATACAGTGGTGCTCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCAAGTTTACAACTGCAACACAATGATACAGTGGTGCTCACAAA  250

seq1  TACTGCCCATGCCTGCACCACTGTGTGTGGAACTGCAACAAGAACCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCCATGCCTGCACCACTGTGTGTGGAACTGCAACAAGAACCATGG  300

seq1  CAATCATCTTACCAAAAGCAATCTACAGATTCAATGGAGTCCCCATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCTTACCAAAAGCAATCTACAGATTCAATGGAGTCCCCATCAAA  350

seq1  ATTCCAATTCGATTCTTCATAGAGTTAGAAAGGGCAATTCTCAAATTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTCGATTCTTCATAGAGTTAGAAAGGGCAATTCTCAAATTCAT  400

seq1  TTGGAATAAAAAAAAAAACCCAGGATAGCGAAAACGACTCTTAACAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAAAAAAAAAAACCCAGGATAGCGAAAACGACTCTTAACAATAA  450

seq1  AAGAATTTCTTTGGAAATCACCATCCCTGACCTCAATCTATACTATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTCTTTGGAAATCACCATCCCTGACCTCAATCTATACTATAGAG  500

seq1  CAATAGTGATAAAACCTGCATGGAATTGGTACAGATACAGACAGGTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGATAAAACCTGCATGGAATTGGTACAGATACAGACAGGTACAT  550

seq1  CAATGAGGTAAAATTGAAGACCCAGAAATGAACCCACACAGCTATGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGTAAAATTGAAGACCCAGAAATGAACCCACACAGCTATGGTTA  600

seq1  CTTGATCTTTGACAAGGGAGCTAAAACCATCCAGGGGAAAAAAGACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTTGACAAGGGAGCTAAAACCATCCAGGGGAAAAAAGACAGCA  650

seq1  TTTTTCAACAAATGATTTTGGTTCACCTCACAGTCTGCATGTAGAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAACAAATGATTTTGGTTCACCTCACAGTCTGCATGTAGAAGAAT  700

seq1  GCAGATCTATCCATTTTTATCTCCTTGTACAAAGCTCAAGTCCAAGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTATCCATTTTTATCTCCTTGTACAAAGCTCAAGTCCAAGTGGA  750

seq1  TCAAGGACCTCCACCTAAAACCAGATATGCTGAATCTAATATAAG  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACCTCCACCTAAAACCAGATATGCTGAATCTAATATAAG  795

seq1: chr7_4346960_4347526
seq2: B6Ng01-027B23.g_74_640 (reverse)

seq1  TTTCTTTAGGGTGTTCCCTCACAAAGTTGACCATAATCTAGTGGAAGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGGGTGTTCCCTCACAAAGTTGACCATAATCTAGTGGAAGGTC  50

seq1  ACATACCCAAGAGTATATAGGCTGCACAAACTGCACTTGATAGCTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCAAGAGTATATAGGCTGCACAAACTGCACTTGATAGCTTTAAA  100

seq1  CACGTTTTTTAAAGAACACAAAGTTGAGTGAATAGAGGAAAGGAAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTTTTAAAGAACACAAAGTTGAGTGAATAGAGGAAAGGAAAGGAT  150

seq1  TTGGGGCAAAGGTATATGTAATCTAAACACACCCCACAAAATTCTCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAAAGGTATATGTAATCTAAACACACCCCACAAAATTCTCAAAG  200

seq1  ATTTATTTTTTCCTCTTTTTCTCTTTCTTTTTCATTTTCTTCTTCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTCCTCTTTTTCTCTTTCTTTTTCATTTTCTTCTTCTTCTA  250

seq1  TAACACTCCTGGGAATAGAGCCACAAGATGCTCCAACATGAAATAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTCCTGGGAATAGAGCCACAAGATGCTCCAACATGAAATAAGAAC  300

seq1  ACATGCTCCATTATGTTCATAGCAGCCATATTTATGATAGCCAGAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCCATTATGTTCATAGCAGCCATATTTATGATAGCCAGAAACTA  350

seq1  GAAGCATCCCAGATGTCCCTCAATAGAGAAATGGATACACAAAATATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCCCAGATGTCCCTCAATAGAGAAATGGATACACAAAATATGGT  400

seq1  GCATTTACACAGTGGAATACTACTCAGCTACTAAAAACAATGACTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACACAGTGGAATACTACTCAGCTACTAAAAACAATGACTTCATG  450

seq1  AAATTTACAGGCAAATGGATGGAACTTGAAAATATCATCCTGGGTGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACAGGCAAATGGATGGAACTTGAAAATATCATCCTGGGTGAGGT  500

seq1  AACTCAGTCACAAAGGAACAAACACGCTATGTACACACTGATAAGTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTCACAAAGGAACAAACACGCTATGTACACACTGATAAGTGGAT  550

seq1  ATAAACCCAAATGTTCG  567
      ||||||||||| |||||
seq2  ATAAACCCAAAAGTTCG  567