BAC Information

Click to search

BAC

Clone NameB6Ng01-027C04
Chromosome7 (Build37)
Map Location 107,558,408 - 107,716,795
singlet/doubletdoublet
Overlap geneAU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48
Upstream geneGdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1
Downstream geneLOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027C04.bB6Ng01-027C04.g
ACCDH857965DH857966
length833956
definitionDH857965|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C04, 5' end.DH857966|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,558,408 - 107,559,238)(107,715,840 - 107,716,795)
sequence
gaattcatttatccttcatcctctggctagttaatgtatttttttctgtt
gagccacttacctatttgtcttctaaaacagtcatatttgtgcacacctt
taatctcagcacttgagaggcaaaggcaggcagatctctgtaaattagaa
gccagccagggctacatagtgagacctgttcttagaataaataaacattt
aaaagatcacgttgctatggccacagtgaagtacatggatgagtttcctt
catattctgtgttcacatgtttaatgatcatttctcatagcagagctgaa
cactaccattctgcttatcttctgctaccgtatggagtcacactgaaaga
acctggaaatggggaaggagtcagcgcatggactagtgatgactctggtt
gggctgtgtgacatgtatctgttctctttcacagtggtgaaattccagca
gcgatttgtgtgtccagtagagtttggtggcccgatgatagagcactggt
gggattctaacctcatcttccaaatttatgcaaagaaaaccccacagaaa
aaggtaactcatttgaggcttaccattcacactagacacttgttagataa
accatttctgtcaaatctaattatcagaacagctctgtgaattaggtttc
tcatcaccttcattttcttagaagaaacagactcagccaagttgagtgac
ttgtctgagattcctactctaacaaaagcaggacccgagcattgtgtaag
ttcttggtccagtcccgtctgctctgctctggcttggggttttgttttgt
tttggttttttgggttttttggggtttcttttt
gaattccttgcagatgagagacttaggcaagcattttcagcccttgcaac
ttggactgtatcatcatctcaaagatcagtttcctttctgctttttgaag
tcactgatagatgattgtctatgtacttaaacatggtgattgacatctgg
gattttaatttatacataatgttttgttttgcagtgtaggcaggtatgag
agagcactaactctgtagctgaattcttgattggtgtgtttaggggtgca
gaagaatacaagatgaggggtgcagccccacaaggcaccaaagatgcaca
tagcaactacaaggcttctgtaggctggcaagtaggtcttacagaataga
aaaggagatacagtaactgggcctgggctataaagacaggtccttaaaat
gcttagttagggaacctcatatgtgggttgtgaaaagccaacaaacatgg
gaaaatgcagcaaaacctttctgtctcattcagtgctgactgtagtgtct
ggccagtagtgaacacttccaaaatttccatgtatgagatagattgatgg
ttgaattaatgaaaaagtgtaatgactagaaatttctttttaagactgtt
ctatggctgaagagggtggagtaaagagagggactagaaagaccaggaac
ctaattctcaccttccaggctcctgatgctttgtctgtactcctccccac
atcctccacacagcaaccaaactgaccttttaaaaacatgacagggggtg
gagcaatggagcagaacttaagagcacttgctgctcttgcagaggacttg
gagttcagtttccagcacccattttattggctcatagttccaggggaatc
cgatgccctcttctggcctctgcagatattgcatgcatgtgatccacatc
aaataaataaaatccagccgggcgtggtggcgcacgcctttaatccagca
ctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107558408_107559238
seq2: B6Ng01-027C04.b_44_876

seq1  GAATTCATTTATCCTTCATCCTCTGGCTAGTTAATGTATTTTTTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATCCTTCATCCTCTGGCTAGTTAATGTATTTTTTTCTGTT  50

seq1  GAGCCACTTACCTATTTGTCTTCTAAAACAGTCATATTTGTGCACACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTTACCTATTTGTCTTCTAAAACAGTCATATTTGTGCACACCTT  100

seq1  TAATCTCAGCACTTGAGAGGCAAAGGCAGGCAGATCTCTGTAAATTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGCACTTGAGAGGCAAAGGCAGGCAGATCTCTGTAAATTAGAA  150

seq1  GCCAGCCAGGGCTACATAGTGAGACCTGTTCTTAGAATAAATAAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAGGGCTACATAGTGAGACCTGTTCTTAGAATAAATAAACATTT  200

seq1  AAAAGATCACGTTGCTATGGCCACAGTGAAGTACATGGATGAGTTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCACGTTGCTATGGCCACAGTGAAGTACATGGATGAGTTTCCTT  250

seq1  CATATTCTGTGTTCACATGTTTAATGATCATTTCTCATAGCAGAGCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTGTGTTCACATGTTTAATGATCATTTCTCATAGCAGAGCTGAA  300

seq1  CACTACCATTCTGCTTATCTTCTGCTACCGTATGGAGTCACACTGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCATTCTGCTTATCTTCTGCTACCGTATGGAGTCACACTGAAAGA  350

seq1  ACCTGGAAATGGGGAAGGAGTCAGCGCATGGACTAGTGATGACTCTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAATGGGGAAGGAGTCAGCGCATGGACTAGTGATGACTCTGGTT  400

seq1  GGGCTGTGTGACATGTATCTGTTCTCTTTCACAGTGGTGAAATTCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTGACATGTATCTGTTCTCTTTCACAGTGGTGAAATTCCAGCA  450

seq1  GCGATTTGTGTGTCCAGTAGAGTTTGGTGGCCCGATGATAGAGCACTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTTGTGTGTCCAGTAGAGTTTGGTGGCCCGATGATAGAGCACTGGT  500

seq1  GGGATTCTAACCTCATCTTCCAAATTTATGCAAAGAAAACCCCACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCTAACCTCATCTTCCAAATTTATGCAAAGAAAACCCCACAGAAA  550

seq1  AAGGTAACTCATTTGAGGCTTACCATTCACACTAGACACTTGTTAGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACTCATTTGAGGCTTACCATTCACACTAGACACTTGTTAGATAA  600

seq1  ACCATTTCTGTCAAATCTAATTATCAGAACAGCTCTGTGAATTAGGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTGTCAAATCTAATTATCAGAACAGCTCTGTGAATTAGGTTTC  650

seq1  TCATCACCTTCA-TTTCTTAGAAGAAACAGACTCAGCCAAGTTGAGTGAC  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATCACCTTCATTTTCTTAGAAGAAACAGACTCAGCCAAGTTGAGTGAC  700

seq1  TTGTCTGAGATTCCTACTCTAACAAAAGCAGGACCCGAGCATTGTGTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAGATTCCTACTCTAACAAAAGCAGGACCCGAGCATTGTGTAAG  750

seq1  TTCTTGGTCCAGTCCCGTCTGCTCTGCTCTGGCTTGGGGTTTTGTTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCCAGTCCCGTCTGCTCTGCTCTGGCTTGGGGTTTTGTTTTGT  800

seq1  TTTGGTTTTTT-GGTTTTTTGGGGTTTTTTTTT  831
      ||||||||||| ||||||||||||||| |||||
seq2  TTTGGTTTTTTGGGTTTTTTGGGGTTTCTTTTT  833

seq1: chr7_107715840_107716795
seq2: B6Ng01-027C04.g_67_1022 (reverse)

seq1  CCAGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTGGATTTTA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGCT-GGATTAAAGGCGTGCGCCACCACGCCCGGCTGGATTTTA  49

seq1  TTTATTTGATGTGGATCACATGCATGCAGTATCTGCAGAGGCCAGAAGAG  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTATTTGATGTGGATCACATGCATGCAATATCTGCAGAGGCCAGAAGAG  99

seq1  GGCATCGGATTCCCCTGGAACTATGAGCCAATAATATGGGTGCTGGAAAC  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCATCGGATTCCCCTGGAACTATGAGCCAATAAAATGGGTGCTGGAAAC  149

seq1  TGAACT-CAAGTCCTCTGCAAGAGCAGCAAGTGCTCTTAAGTTCTGCTCC  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCAAGTCCTCTGCAAGAGCAGCAAGTGCTCTTAAGTTCTGCTCC  199

seq1  ATTGCTCCACCCCCTGTCATGTTTTTAAAAGGTCAGTTTGGTTGCTGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCACCCCCTGTCATGTTTTTAAAAGGTCAGTTTGGTTGCTGTGT  249

seq1  GGAGGATGTGGGGAGGAGTACAGACAAAGCATCAGGAGCCTGGAAGGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGTGGGGAGGAGTACAGACAAAGCATCAGGAGCCTGGAAGGTGA  299

seq1  GAATTAGGTTCCTGGTCTTTCTAGTCCCTCTCTTTACTCCACCCTCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGGTTCCTGGTCTTTCTAGTCCCTCTCTTTACTCCACCCTCTTCA  349

seq1  GCCATAGAACAGTCTTAAAAAGAAATTTCTAGTCATTACACTTTTTCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGAACAGTCTTAAAAAGAAATTTCTAGTCATTACACTTTTTCATT  399

seq1  AATTCAACCATCAATCTATCTCATACATGGAAATTTTGGAAGTGTTCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACCATCAATCTATCTCATACATGGAAATTTTGGAAGTGTTCACT  449

seq1  ACTGGCCAGACACTACAGTCAGCACTGAATGAGACAGAAAGGTTTTGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGACACTACAGTCAGCACTGAATGAGACAGAAAGGTTTTGCTG  499

seq1  CATTTTCCCATGTTTGTTGGCTTTTCACAACCCACATATGAGGTTCCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCATGTTTGTTGGCTTTTCACAACCCACATATGAGGTTCCCTA  549

seq1  ACTAAGCATTTTAAGGACCTGTCTTTATAGCCCAGGCCCAGTTACTGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCATTTTAAGGACCTGTCTTTATAGCCCAGGCCCAGTTACTGTAT  599

seq1  CTCCTTTTCTATTCTGTAAGACCTACTTGCCAGCCTACAGAAGCCTTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTATTCTGTAAGACCTACTTGCCAGCCTACAGAAGCCTTGTA  649

seq1  GTTGCTATGTGCATCTTTGGTGCCTTGTGGGGCTGCACCCCTCATCTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATGTGCATCTTTGGTGCCTTGTGGGGCTGCACCCCTCATCTTGT  699

seq1  ATTCTTCTGCACCCCTAAACACACCAATCAAGAATTCAGCTACAGAGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTGCACCCCTAAACACACCAATCAAGAATTCAGCTACAGAGTTA  749

seq1  GTGCTCTCTCATACCTGCCTACACTGCAAAACAAAACATTATGTATAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCTCATACCTGCCTACACTGCAAAACAAAACATTATGTATAAAT  799

seq1  TAAAATCCCAGATGTCAATCACCATGTTTAAGTACATAGACAATCATCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCCAGATGTCAATCACCATGTTTAAGTACATAGACAATCATCTA  849

seq1  TCAGTGACTTCAAAAAGCAGAAAGGAAACTGATCTTTGAGATGATGATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACTTCAAAAAGCAGAAAGGAAACTGATCTTTGAGATGATGATAC  899

seq1  AGTCCAAGTTGCAAGGGCTGAAAATGCTTGCCTAAGTCTCTCATCTGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGTTGCAAGGGCTGAAAATGCTTGCCTAAGTCTCTCATCTGCAA  949

seq1  GGAATTC  956
      |||||||
seq2  GGAATTC  956