BAC Information

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BAC

Clone NameB6Ng01-027I20
Chromosome7 (Build37)
Map Location 12,612,460 - 12,760,861
singlet/doubletdoublet
Overlap geneLOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437
Upstream geneZscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423
Downstream geneV1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I20.bB6Ng01-027I20.g
ACCDH858265DH858266
length587981
definitionDH858265|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I20, 5' end.DH858266|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,612,460 - 12,613,046)(12,759,868 - 12,760,861)
sequence
gaattcatgtagagatcctgaggattcccgacagaaaataccaattatgg
atcaagggctgaatgctaaaatagaagtttccactagggaaatgaaatgt
taaggattctttgaaaagttagctgtgttggagagtgttttactgaggca
agcacatgaaggagtgttttcaagaagcagacagaggtgaaagggtgttt
cactaaaacagacacttaaagaaacatttcgctgaaacaacacatgtgaa
agactaagacagattcctgaaggaacatttccctaaaacagacacagata
agaggatgttctactaaaacaaacacttaaaagaacacatgataaaagac
tctttactaaaaacacacgtgtattggcctgctttacattgcatagttga
gctccttttgttgagacagagagaaacacaccaaaaaacaaaacaagaca
agacaagacaaaaaatcttctgatggtgttctgctccttcttgccacatt
cttggactcagaccaattgtaagagtgacatctgctgagacatacccaca
agacacatagtggagcaagatccatggaagagacatg
gaattcaggaatgtccaaaatgtgtacagaaaaaggctcaaaattgccaa
tagttaagggactccaatgaggggatggaagtgagaactgcaatgagaga
tcatcacatactgaataaaaaggtgttagttaaaacaaattactataaat
aaaagcaagagttaaagcagctcagtatatggaagacaagaaccctagtg
tagactccatagcaaagtaaaatactgtagaagtataaacattagtattg
tttgtcttcaacataattgaaaaataatagccaagttccaattgtagtgt
tactgagtttcctatatgataggtcatcaactcttgttaattataataac
aaaggctgtatagggaatctggcacataagattatacaaagcgacacaga
aaatgaccagtattgagtaagaacagataaaggtattctatcctaatgcc
ctgctgagacacagcagttaccaggaagaatgtcaggaaaacacaatcat
ttctttcttgaatggttggggtaacttaatgatcagaccttctgatccta
aaagagtctgtgtacagtgtatgtccacatgcacaatgggattatattta
tatccccccacactgggcacaaatattaatgtttaattattctcaaacta
aaatgctaaaattctcagaggaaaatgttagaaatacaaggcctagaggc
aaccatacaacaacaacacaggaaattcaccaaggattaactaatgaact
gcatgaaattaaaagctttctgtacattaaaggaaactaccagccaagtg
gagatatagcctactgaatgggagaaatctttgatgcctgatttcactca
gagcttacaacctacatgcataagacaaatatggatttaaaaatcttttc
attactttccagtgaacagtattaagaaaatgggcaagatggcctctttg
tcatcattgaagagaacgctttgtcctgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12612460_12613046
seq2: B6Ng01-027I20.b_45_631

seq1  GAATTCATGTAGAGATCCTGAGGATTCCAGACAGAAAATACCAATTATGG  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCATGTAGAGATCCTGAGGATTCCCGACAGAAAATACCAATTATGG  50

seq1  ATCAAGGGCTGAATGCTAAAATAGAAGTTTCCACTAGGGAAATGAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGCTGAATGCTAAAATAGAAGTTTCCACTAGGGAAATGAAATGT  100

seq1  TAAGGATTCTTTGAAAAGTTAGCTGTGTTGGAGAGTGTTTTACTGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATTCTTTGAAAAGTTAGCTGTGTTGGAGAGTGTTTTACTGAGGCA  150

seq1  AGCACATGAAGGAGTGTTTTCAAGAAGCAGACAGAGGTGAAAGGGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGAAGGAGTGTTTTCAAGAAGCAGACAGAGGTGAAAGGGTGTTT  200

seq1  CACTAAAACAGACACTTAAAGAAACATTTCGCTGAAACAACACATGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAACAGACACTTAAAGAAACATTTCGCTGAAACAACACATGTGAA  250

seq1  AGACTAAGACAGATTCCTGAAGGAACATTTCCCTAAAACAGACACAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGACAGATTCCTGAAGGAACATTTCCCTAAAACAGACACAGATA  300

seq1  AGAGGATGTTCTACTAAAACAAACACTTAAAAGAACACATGATAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGTTCTACTAAAACAAACACTTAAAAGAACACATGATAAAAGAC  350

seq1  TCTTTACTAAAAACACACGTGTATTGGCCTGCTTTACATTGCATAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTAAAAACACACGTGTATTGGCCTGCTTTACATTGCATAGTTGA  400

seq1  GCTCCTTTTGTTGAGACAGAGAGAAACACACCAAAAAACAAAACAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTTGTTGAGACAGAGAGAAACACACCAAAAAACAAAACAAGACA  450

seq1  AGACAAGACAAAAAATCTTCTGATGGTGTTCTGCTCCTTCTTGCCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGACAAAAAATCTTCTGATGGTGTTCTGCTCCTTCTTGCCACATT  500

seq1  CTTGGACTCAGACCAATTGTAAGAGTGACATCTGCTGAGACATACCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCAGACCAATTGTAAGAGTGACATCTGCTGAGACATACCCACA  550

seq1  AGACACATAGTGGAGCAAGATCCATGGAAGAGACATG  587
      |||||||||||||||||||||||||||||||||||||
seq2  AGACACATAGTGGAGCAAGATCCATGGAAGAGACATG  587

seq1: chr7_12759868_12760861
seq2: B6Ng01-027I20.g_70_1050 (reverse)

seq1  TTACAGGACTAAGGGCTTCTCCTTCAATTGATGACCAATGAGGCCATCCT  50
      ||||||||| ||| | |||| |||||| |||||| ||| |||||||| ||
seq2  TTACAGGACAAAGCG-TTCT-CTTCAA-TGATGA-CAAAGAGGCCAT-CT  45

seq1  TGCCCATTTTCTTAACTACTTGTTCACTGGAAAGTTAATGAAAAGATTTT  100
      ||||||||||||||| ||| |||||||||||||| ||||||||||| |||
seq2  TGCCCATTTTCTTAA-TAC-TGTTCACTGGAAAG-TAATGAAAAGA-TTT  91

seq1  TTAAATCCATATTTGTCCTTATGCATGTAGGTTGTAAGCTCCTGAGTGAA  150
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TTAAATCCATATTTGT-CTTATGCATGTAGGTTGTAAGCT-CTGAGTGAA  139

seq1  ATTCAGGCATCAAAGATTTTCTCCCATTCAGTAGGCTATATCTCCACTTG  200
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  A-TCAGGCATCAAAGA-TTTCTCCCATTCAGTAGGCTATATCTCCACTTG  187

seq1  GCTGGTAGTTTCCTTTAATGTACAGAAAGCTTTTAATTTCATGCAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAGTTTCCTTTAATGTACAGAAAGCTTTTAATTTCATGCAGTTCA  237

seq1  TTAGTTAATCCTTGGTGAATTTCCTGTGTTGTTGTTGTATGGTTGCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAATCCTTGGTGAATTTCCTGTGTTGTTGTTGTATGGTTGCCTCT  287

seq1  AGGCCTTGTATTTCTAACATTTTCCTCTGAGAATTTTAGCATTTTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGTATTTCTAACATTTTCCTCTGAGAATTTTAGCATTTTAGTTT  337

seq1  GAGAATAATTAAACATTAATATTTGTGCCCAGTGTGGGGGGATATAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATTAAACATTAATATTTGTGCCCAGTGTGGGGGGATATAAATA  387

seq1  TAATCCCATTGTGCATGTGGACATACACTGTACACAGACTCTTTTAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCATTGTGCATGTGGACATACACTGTACACAGACTCTTTTAGGAT  437

seq1  CAGAAGGTCTGATCATTAAGTTACCCCAACCATTCAAGAAAGAAATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTCTGATCATTAAGTTACCCCAACCATTCAAGAAAGAAATGATT  487

seq1  GTGTTTTCCTGACATTCTTCCTGGTAACTGCTGTGTCTCAGCAGGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCCTGACATTCTTCCTGGTAACTGCTGTGTCTCAGCAGGGCATT  537

seq1  AGGATAGAATACCTTTATCTGTTCTTACTCAATACTGGTCATTTTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAATACCTTTATCTGTTCTTACTCAATACTGGTCATTTTCTGTG  587

seq1  TCGCTTTGTATAATCTTATGTGCCAGATTCCCTATACAGCCTTTGTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTTGTATAATCTTATGTGCCAGATTCCCTATACAGCCTTTGTTATT  637

seq1  ATAATTAACAAGAGTTGATGACCTATCATATAGGAAACTCAGTAACACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAACAAGAGTTGATGACCTATCATATAGGAAACTCAGTAACACTA  687

seq1  CAATTGGAACTTGGCTATTATTTTTCAATTATGTTGAAGACAAACAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGAACTTGGCTATTATTTTTCAATTATGTTGAAGACAAACAATAC  737

seq1  TAATGTTTATACTTCTACAGTATTTTACTTTGCTATGGAGTCTACACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTATACTTCTACAGTATTTTACTTTGCTATGGAGTCTACACTAG  787

seq1  GGTTCTTGTCTTCCATATACTGAGCTGCTTTAACTCTTGCTTTTATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGTCTTCCATATACTGAGCTGCTTTAACTCTTGCTTTTATTTAT  837

seq1  AGTAATTTGTTTTAACTAACACCTTTTTATTCAGTATGTGATGATCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTGTTTTAACTAACACCTTTTTATTCAGTATGTGATGATCTCTC  887

seq1  ATTGCAGTTCTCACTTCCATCCCCTCATTGGAGTCCCTTAACTATTGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTTCTCACTTCCATCCCCTCATTGGAGTCCCTTAACTATTGGCA  937

seq1  ATTTTGAGCCTTTTTCTGTACACATTTTGGACATTCCTGAATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGCCTTTTTCTGTACACATTTTGGACATTCCTGAATTC  981