BAC Information

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BAC

Clone NameB6Ng01-027L12
Chromosome7 (Build37)
Map Location 25,530,951 - 25,671,032
singlet/doubletdoublet
Overlap geneCd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19
Upstream geneV1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155
Downstream geneCd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L12.bB6Ng01-027L12.g
ACCDH858388DH858389
length1,0151,040
definitionDH858388|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L12, 5' end.DH858389|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,530,951 - 25,531,978)(25,669,984 - 25,671,032)
sequence
gaattctgcatcccagcaccgtcctcagctctgggcatggggctaccaca
tataactgctcagcaagatgaggtgcagaggaaggagtcagacagagatc
tcaggtgtgagtaggctggacaggatctacagggcactggcctggcccag
tgccggagtgtgaccctccagctcagcccacgtacctacgtctatgagca
gcagcgtctcttgacaaatctcatcaggtgcacacacctgagaccctggt
gccgtccacttgacaggttcctccgcaaagccattgccaagctcaaacat
cacacccctgtaacaggacaactctgttgtttctgtggagaggaaaatcc
agggtttatggaagtcacagagcccaccatgcctgcccctgcagcttctg
ggctgggaaggccatcgcatcctgaagcctactcccaatgccctggctgt
gtcatccctgccttgcattaaggagggaccgagaactcaaagcctccagg
cctacagccctcctcacccacttactgcctgaacccctgcaaggacctcc
tctcagagcctcgtgaggaaggcttgcttctcactgatccctctctgggt
attctctatccccatctggtttcatgttctcactataataacaaggaagg
aggcctggagccatatatttctgggtgtgtttgtgttggtgcttgcagat
gtgtgtgcacagaagcgtgccctcaggggtcaatgccaagtgtcttcctt
catcaggcttcatctccctgtttgagatagggtcttgggctggagagatg
gctcagccattaaaggctaggctcacaaccaaaaatgtaagagatagggt
cttgtggggccatgtaagccatgttaccagggagccggctagggcaagac
cctgaaatctcatcttgagcttgcagtagtaaggtcactctttttgttca
ggcctgaatgctgtctctagaagtcacatagcctcatgccaattacaggg
caagcacccgaatcc
gaattctcaggcagggcccccccctagcaaaggcctggccatgaactgca
accctggcactacccagcagaaagaatcctgctcccctaaagactagaga
caacaggatgcacaaagcacccaggcaggatccagagagaccagaggggc
accccaaagttttctttgggcaccagatctgtaagtttcctttataacag
gagtggcactcccgaccactcaaccaaacaggagttgacagttgttcaaa
tctaaatgctataaccgtggacacagaaagctgttaagactctcaagtaa
gcaaaatatggacactcatttgccctcagatttcctttctagtttaaagc
tacagctattcaataatgaggtctgtctcctggtgtagatgggaggggaa
gacagggtccctgcctggggtcgcccaggttcccactcccagccaaagcc
tcagttcttaccagctcgtgtgtagaaccagttctcatcatatggggcaa
gctctttatgtttggccagcttgactgtgtccacccattcggggactttc
agcttcccggacctagaaccaagagaattgagaaaaagcacacttcaaaa
atttccaaagatgacttcagatctactaacctttagcaagttaacaaggt
tgggggaaaaaaaaagcaagaacgaacaggttaaaaaggaagcatggtca
ccgtaggcccaattcagaaaagacccccagcaagtggccagagggattaa
tgacacattggggtcacagcgcacaggggtcaggcctcagttccaacaaa
cacttactttttgaggaaggctgccagagctctgacgaactcctgctggt
taacgtcttttacagtaactccgggcatctgaggagggacaagcatgccg
aggtcaggcttgtgcaaacccctgacgtgggtcaggtcaacaccaaccct
gctcgtcgcagtccacccaaagcctcagcttccacccagctcatgtcctg
caactcggctcctgaggtctacagagttgccgggggcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25530951_25531978
seq2: B6Ng01-027L12.b_47_1061

seq1  GAATTCTGCATCCCAGCACCGTCCTCAGCTCTGGGCATGGGGCTACCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATCCCAGCACCGTCCTCAGCTCTGGGCATGGGGCTACCACA  50

seq1  TATAACTGCTCAGCAAGATGAGGTGCAGAGGAAGGAGTCAGACAGAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCTCAGCAAGATGAGGTGCAGAGGAAGGAGTCAGACAGAGATC  100

seq1  TCAGGTGTGAGTAGGCTGGACAGGATCTACAGGGCACTGGCCTGGCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGAGTAGGCTGGACAGGATCTACAGGGCACTGGCCTGGCCCAG  150

seq1  TGCCGGAGTGTGACCCTCCAGCTCAGCCCACGTACCTACGTCTATGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGAGTGTGACCCTCCAGCTCAGCCCACGTACCTACGTCTATGAGCA  200

seq1  GCAGCGTCTCTTGACAAATCTCATCAGGTGCACACACCTGAGACCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTCTCTTGACAAATCTCATCAGGTGCACACACCTGAGACCCTGGT  250

seq1  GCCGTCCACTTGACAGGTTCCTCCGCAAAGCCATTGCCAAGCTCAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCCACTTGACAGGTTCCTCCGCAAAGCCATTGCCAAGCTCAAACAT  300

seq1  CACACCCCTGTAACAGGACAACTCTGTTGTTTCTGTGGAGAGGAAAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCTGTAACAGGACAACTCTGTTGTTTCTGTGGAGAGGAAAATCC  350

seq1  AGGGTTTATGGAAGTCACAGAGCCCACCATGCCTGCCCCTGCAGCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTATGGAAGTCACAGAGCCCACCATGCCTGCCCCTGCAGCTTCTG  400

seq1  GGCTGGGAAGGCCATCGCATCCTGAAGCCTACTCCCAATGCCCTGGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAAGGCCATCGCATCCTGAAGCCTACTCCCAATGCCCTGGCTGT  450

seq1  GTCATCCCTGCCTTGCATTAAGGAGGGACCGAGAACTCAAAGCCTCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCCTGCCTTGCATTAAGGAGGGACCGAGAACTCAAAGCCTCCAGG  500

seq1  CCTACAGCCCTCCTCACCCACTTACTGCCTGAACCCCTGCAAGGACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGCCCTCCTCACCCACTTACTGCCTGAACCCCTGCAAGGACCTCC  550

seq1  TCTCAGAGCCTCGTGAGGAAGGCTTGCTTCTCACTGATCCCTCTCTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCCTCGTGAGGAAGGCTTGCTTCTCACTGATCCCTCTCTGGGT  600

seq1  ATTCTCTATCCCCATCTGGTTTCATGTTCTCACTATAATAACAAGGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTATCCCCATCTGGTTTCATGTTCTCACTATAATAACAAGGAAGG  650

seq1  AGGCCTGGAGCCATATATTTCTGGGTGTGTTTGTGTTGGTGCTTGCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGAGCCATATATTTCTGGGTGTGTTTGTGTTGGTGCTTGCAGAT  700

seq1  GTGTGTGCACAGAAGCGTGCCCTCAGGGGTCAATGCCAAGTGTCTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCACAGAAGCGTGCCCTCAGGGGTCAATGCCAAGTGTCTTCCTT  750

seq1  CATCAGGCTTCATCTCCTTGTTTGAGATAGGGTCTTGGGCTGGAGAGATG  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATCAGGCTTCATCTCCCTGTTTGAGATAGGGTCTTGGGCTGGAGAGATG  800

seq1  GCTCAGCCATTAAAGGCTAGGCTCACAACCAAAAATGTAAGAGATAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCATTAAAGGCTAGGCTCACAACCAAAAATGTAAGAGATAGGGT  850

seq1  CTTGTGGGGCCATGTAAGCCATGTTACCAAGGGAGCCGGCCTAGGGCAAG  900
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CTTGTGGGGCCATGTAAGCCATGTTACC-AGGGAGCCGG-CTAGGGCAAG  898

seq1  AACCCTGAAAATCTCATCTTGAGGCTGGCAGTAGTAAGGGTCACTCTTTT  950
       |||||| |||||||||||||| ||| |||||||||| ||||||||  ||
seq2  -ACCCTG-AAATCTCATCTTGA-GCTTGCAGTAGTAA-GGTCACTC--TT  942

seq1  TTTGTTCCAGGCCTGAATGCCTGCCCTAGAAGTCACATAGCCTCATGGCC  1000
      |||||| |||||||||||||   | ||||||||||||||||||||||  |
seq2  TTTGTT-CAGGCCTGAATGCTGTCTCTAGAAGTCACATAGCCTCATG--C  989

seq1  AAATTACAGGGGCAAGCACCCAGAATCC  1028
       ||||||| |||||||||||| ||||||
seq2  CAATTACA-GGGCAAGCACCC-GAATCC  1015

seq1: chr7_25669984_25671032
seq2: B6Ng01-027L12.g_70_1109 (reverse)

seq1  TGTGCACCCGGCAACTCTGTTGGACCTGCAGGAGCCGAGTTGCAGGGACA  50
      ||||| ||||||||||||| | ||||| |||||||||||||||| |||||
seq2  TGTGCCCCCGGCAACTCTG-TAGACCT-CAGGAGCCGAGTTGCA-GGACA  47

seq1  TGAGGCTGGGTGGATGCTGAGGCTTTGGGGTGGACTGGCGACGAGCAGGG  100
      ||| |||||||||| ||||||||||| ||||||||| |||||||||||||
seq2  TGA-GCTGGGTGGAAGCTGAGGCTTT-GGGTGGACT-GCGACGAGCAGGG  94

seq1  TTGGTGTTGACCTGGACCCACGTCAGGGGTTTGCACCAAGCCTGACCTCG  150
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TTGGTGTTGACCT-GACCCACGTCAGGGGTTTGCA-CAAGCCTGACCTCG  142

seq1  GCATGCTTGTCCCTTCCTCAGATGCCCGGAGTTACTGTAAAAGACGTTAA  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTGTCCC-TCCTCAGATGCCCGGAGTTACTGTAAAAGACGTTAA  191

seq1  CCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTAAGTGT  241

seq1  TTGTTGGAACTGAGGCCTGACCCCTGTGCGCTGTGACCCCAATGTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGAACTGAGGCCTGACCCCTGTGCGCTGTGACCCCAATGTGTCAT  291

seq1  TAATCCCTCTGGCCACTTGCTGGGGGTCTTTTCTGAATTGGGCCTACGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCTCTGGCCACTTGCTGGGGGTCTTTTCTGAATTGGGCCTACGGT  341

seq1  GACCATGCTTCCTTTTTAACCTGTTCGTTCTTGCTTTTTTTTTCCCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGCTTCCTTTTTAACCTGTTCGTTCTTGCTTTTTTTTTCCCCCAA  391

seq1  CCTTGTTAACTTGCTAAAGGTTAGTAGATCTGAAGTCATCTTTGGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTAACTTGCTAAAGGTTAGTAGATCTGAAGTCATCTTTGGAAATT  441

seq1  TTTGAAGTGTGCTTTTTCTCAATTCTCTTGGTTCTAGGTCCGGGAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTGTGCTTTTTCTCAATTCTCTTGGTTCTAGGTCCGGGAAGCTG  491

seq1  AAAGTCCCCGAATGGGTGGACACAGTCAAGCTGGCCAAACATAAAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCGAATGGGTGGACACAGTCAAGCTGGCCAAACATAAAGAGCT  541

seq1  TGCCCCATATGATGAGAACTGGTTCTACACACGAGCTGGTAAGAACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATATGATGAGAACTGGTTCTACACACGAGCTGGTAAGAACTGAG  591

seq1  GCTTTGGCTGGGAGTGGGAACCTGGGCGACCCCAGGCAGGGACCCTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCTGGGAGTGGGAACCTGGGCGACCCCAGGCAGGGACCCTGTCT  641

seq1  TCCCCTCCCATCTACACCAGGAGACAGACCTCATTATTGAATAGCTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCATCTACACCAGGAGACAGACCTCATTATTGAATAGCTGTAG  691

seq1  CTTTAAACTAGAAAGGAAATCTGAGGGCAAATGAGTGTCCATATTTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACTAGAAAGGAAATCTGAGGGCAAATGAGTGTCCATATTTTGCT  741

seq1  TACTTGAGAGTCTTAACAGCTTTCTGTGTCCACGGTTATAGCATTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGAGTCTTAACAGCTTTCTGTGTCCACGGTTATAGCATTTAGAT  791

seq1  TTGAACAACTGTCAACTCCTGTTTGGTTGAGTGGTCGGGAGTGCCACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAACTGTCAACTCCTGTTTGGTTGAGTGGTCGGGAGTGCCACTCC  841

seq1  TGTTATAAAGGAAACTTACAGATCTGGTGCCCAAAGAAAACTTTGGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAAGGAAACTTACAGATCTGGTGCCCAAAGAAAACTTTGGGGTG  891

seq1  CCCCTCTGGTCTCTCTGGATCCTGCCTGGGTGCTTTGTGCATCCTGTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGGTCTCTCTGGATCCTGCCTGGGTGCTTTGTGCATCCTGTTGT  941

seq1  CTCTAGTCTTTAGGGGAGCAGGATTCTTTCTGCTGGGTAGTGCCAGGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCTTTAGGGGAGCAGGATTCTTTCTGCTGGGTAGTGCCAGGGTT  991

seq1  GCAGTTCATGGCCAGGCCTTTGCTAGGGGGGGGCCCTGCCTGAGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCATGGCCAGGCCTTTGCTAGGGGGGGGCCCTGCCTGAGAATTC  1040