BAC Information

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BAC

Clone NameB6Ng01-028A07
Chromosome7 (Build37)
Map Location 80,475,618 - 80,603,941
singlet/doubletdoublet
Overlap geneLOC665588, Rgma, Chd2
Upstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik
Downstream gene1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028A07.bB6Ng01-028A07.g
ACCDH858608DH858609
length999593
definitionDH858608|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A07, 5' end.DH858609|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,603,341 - 80,603,941)(80,475,618 - 80,476,212)
sequence
gaattcactatgtagctaaggttaaccctaactgtttactggtgagatct
tgggagtggatcaccacacctggttctacacagtgcaggggatctgactc
ggttttaagcacagtcccagctgagaaattaaaagtaattattaaaagaa
ccaacaaacagatattcctctttcttgttttatttttattatgttttatt
tttatttgctgccaagttcatgcgagtatataatgtgtaacatcgtggtc
agtcccccctctccctgcactgactccttctctgaacaccttccccgggt
acatccgacattgtttcgtgactcagcgagctccgcgaggggttgtgggt
tctttagtggaccatcagcattatcagtggctgtaccactgaagagaata
gtttctcttctcccaacaaccattagctgccaattgctccttcaggatgg
tgggatggggtcatacaacctacttttctgactgtggtggaatattgagg
ggtcctagctcatgcaggtgaaccgcagctgctttgagtccagaagacca
ttaatatgacactcttccctggtcgccagctcttaaccttcttttcagca
accccctcattccacaatggtccaccatattccttgagccttggaagggt
aatgaagaatagagatgtcctgttcagggctgaacactcaacactcactc
agtctcagcgctgtgaccagttaggagtctgctcactgcaaacagttggg
ccaaagcttagtagctctaatgtatgggtaaaatgtaaaagtttggaaag
cagttgacactgtctagcaaaacaacagaagtagagtctccactagcctg
tgactgccccagctgtgggctgttgatcaggtttatagcaacagtgtgga
taccctccttgaggaggtgtctaattcaagcagaagtgtttgtgcatccc
tataaactcagtttcctgtgtactagtattggttgtgtcatttatatac
gaattcctcggaggaaaagacatctagactgtggctcaggccctgccctg
agcaagtcttccaggccagtcctaaaggaacttgaagaggtgtcatcagt
agataggagggggaggcttcagggatcagtgtcagggttccctaagagac
acagggaggaaggtgggtgcgttgatgagctccctggagaacagagcagc
tgaggacaggctgttcctctgcaggcgagaacaagccaagaaaaatcctt
ggcagaaacacagctaaagacagcaacacggatccacggaacgaagtctt
agcagtgggaacaacgtggttctcggtgacttcctatagaagcacgattc
tacctaccaggctgagcggtctatgcaagaagctcacagatcgcgtggag
ccggtttgaagggcatactatgtcctaattgggaaaggaattctaagact
tctcacatatcatgaatcaatgatgggagggtttgtgtgaagggggacta
agaggagaggagggactgatattgggatctaaaatgaagaaaggacggaa
ggaaggaaggaaggaggaagagagtggagaaaggaaggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_80603341_80603941
seq2: B6Ng01-028A07.b_45_645 (reverse)

seq1  TTGCTGAAAAGAAGGTTAAGAGCTGGCGACCAGGGAAGAGTGTCATATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAAAGAAGGTTAAGAGCTGGCGACCAGGGAAGAGTGTCATATTA  50

seq1  ATGGTCTTCTGGACTCAAAGCAGCTGCGGTTCACCTGCATGAGCTAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTCTGGACTCAAAGCAGCTGCGGTTCACCTGCATGAGCTAGGAC  100

seq1  CCCTCAATATTCCACCACAGTCAGAAAAGTAGGTTGTATGACCCCATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAATATTCCACCACAGTCAGAAAAGTAGGTTGTATGACCCCATCCC  150

seq1  ACCATCCTGAAGGAGCAATTGGCAGCTAATGGTTGTTGGGAGAAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTGAAGGAGCAATTGGCAGCTAATGGTTGTTGGGAGAAGAGAAA  200

seq1  CTATTCTCTTCAGTGGTACAGCCACTGATAATGCTGATGGTCCACTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCTTCAGTGGTACAGCCACTGATAATGCTGATGGTCCACTAAAG  250

seq1  AACCCACAACCCCTCGCGGAGCTCGCTGAGTCACGAAACAATGTCGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAACCCCTCGCGGAGCTCGCTGAGTCACGAAACAATGTCGGATG  300

seq1  TACCCGGGGAAGGTGTTCAGAGAAGGAGTCAGTGCAGGGAGAGGGGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGGGGAAGGTGTTCAGAGAAGGAGTCAGTGCAGGGAGAGGGGGGAC  350

seq1  TGACCACGATGTTACACATTATATACTCGCATGAACTTGGCAGCAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACGATGTTACACATTATATACTCGCATGAACTTGGCAGCAAATAA  400

seq1  AAATAAAACATAATAAAAATAAAACAAGAAAGAGGAATATCTGTTTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACATAATAAAAATAAAACAAGAAAGAGGAATATCTGTTTGTTG  450

seq1  GTTCTTTTAATAATTACTTTTAATTTCTCAGCTGGGACTGTGCTTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTAATAATTACTTTTAATTTCTCAGCTGGGACTGTGCTTAAAAC  500

seq1  CGAGTCAGATCCCCTGCACTGTGTAGAACCAGGTGTGGTGATCCACTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCAGATCCCCTGCACTGTGTAGAACCAGGTGTGGTGATCCACTCCC  550

seq1  AAGATCTCACCAGTAAACAGTTAGGGTTAACCTTAGCTACATAGTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCACCAGTAAACAGTTAGGGTTAACCTTAGCTACATAGTGAATT  600

seq1  C  601
      |
seq2  C  601

seq1: chr7_80475618_80476212
seq2: B6Ng01-028A07.g_68_660

seq1  GAATTCCTCGGAGGAAAAGACATCTAGACTGTGGCTCAGGCCCTGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGAGGAAAAGACATCTAGACTGTGGCTCAGGCCCTGCCCTG  50

seq1  AGCAAGTCTTCCAGGCCAGTCCTAAAGGAACTTGAAGAGGTGTCATCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTCTTCCAGGCCAGTCCTAAAGGAACTTGAAGAGGTGTCATCAGT  100

seq1  AGATAGGAGGGGGAGGCTTCAGGGATCAGTGTCAGGGTTCCCTAAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAGGGGGAGGCTTCAGGGATCAGTGTCAGGGTTCCCTAAGAGAC  150

seq1  ACAGGGAGGAAGGTGGGTGCGTTGATGAGCTCCCTGGAGAACAGAGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGGAAGGTGGGTGCGTTGATGAGCTCCCTGGAGAACAGAGCAGC  200

seq1  TGAGGACAGGCTGTTCCTCTGCAGGCGAGAACAAGCCAAGAAAAATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGGCTGTTCCTCTGCAGGCGAGAACAAGCCAAGAAAAATCCTT  250

seq1  GGCAGAAACACAGCTAAAGACAGCAACACGGATCCACGGAACGAAGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAACACAGCTAAAGACAGCAACACGGATCCACGGAACGAAGTCTT  300

seq1  AGCAGTGGGAACAACGTGGTTCTCGGTGACTTCCTATAGAAGCACGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGAACAACGTGGTTCTCGGTGACTTCCTATAGAAGCACGATTC  350

seq1  TACCTACCAGGCTGAGCGGTCTATGCAAGAAGCTCACAGATCGCGTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCAGGCTGAGCGGTCTATGCAAGAAGCTCACAGATCGCGTGGAG  400

seq1  CCGGTTTGAAGGGCATACTATGTCCTAATTGGGAAAGGAATTCTAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTTGAAGGGCATACTATGTCCTAATTGGGAAAGGAATTCTAAGACT  450

seq1  TCTCACATATCATGAATCAATGATGGGAGGGTTTGTGTGAAGGGGGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATATCATGAATCAATGATGGGAGGGTTTGTGTGAAGGGGGACTA  500

seq1  AGAGGAGAGGAGGGACTGATATTGGGATCTAAAATGAAGAAAGGACGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGAGGGACTGATATTGGGATCTAAAATGAAGAAAGGACGGAA  550

seq1  GGAAGGAAGGAAGGAAGGAAGAGAGTGGAGGAAAGGAAGGAAGGA  595
      |||||||||||||| |||||||||||||| |||||||||||||||
seq2  GGAAGGAAGGAAGG-AGGAAGAGAGTGGA-GAAAGGAAGGAAGGA  593