BAC Information

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BAC

Clone NameB6Ng01-028D07
Chromosome7 (Build37)
Map Location 6,367,172 - 6,496,155
singlet/doubletdoublet
Overlap geneLOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328
Upstream geneV1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28
Downstream geneOlfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028D07.bB6Ng01-028D07.g
ACCDH858746DH858747
length4041,082
definitionDH858746|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D07, 5' end.DH858747|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,367,172 - 6,367,581)(6,495,061 - 6,496,155)
sequence
tgcatgttaaattgggcttggtggtacatcactaataaccccagcgatag
ggaggtagaggcaggagaatcagaagttcaaggccacatagtgagttcac
agtcagtctggaccatagatctgacctggggggggggggcggggaacaat
agtaaacaactctgcatgtatgattttcttatttttaccttcactgaaat
cctgagagtggtggcagttgtttcctatcattcccacttagcagaatgga
aaaccgaggtacaggaatattaagtaatatccctagatgacacagccagc
acctaactccatctatggaacctcggactccaggctgacatgcctttgcc
tgagctccttccagtctcctctcaccctagagaagcatgtggggtggggt
gggg
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaac
caataaataaataaataaataaataaataaataaataaataaataatctt
ttaaaaaagatactaaatgtcacttctggcttccatgaacacatgttcac
ctgcacccatccacccacatgaagtgtgtgcacacagaaataagcgggaa
gcaaatctttccaacaagcctcgagaacatcatgttaagagaaataagca
agacactaaaatttgatgtttctgtgaataagttttttagatatgagatt
acagtaacaaagtatgatagagtggactggagtgatgtctgtgaaaaggt
acaagattttggttataaaatttttaaagttctgggcttctaatgcacag
cacagcagctatatttcattaaattatggtctgtatttgatatttgccca
gaacatagatcccaagtacatttaccccaacctcaatttaacaatggaac
aaaaccagataaattgcattagagaaacaacatcttataatatatctgaa
caatgttcttcagactggtcaacatcactcaacccaaaagcccagaggag
cctgaggagatgtgacacctaaatgacaggtgtcatgagatgccagagca
gaagcatgtgaggtgagatcaaagaaaatctgcataaatgtcattactga
gttactgattgtatttaatgtgctgtgtacgggtgggatgtcatacgctc
aggtgtttatgggaatagtctatactatcttcacactcctctgttaacct
gaaatttctcttaaagcaagttttgaactctagaaagggggtagtaggat
acaggtgctgtgagcggggcgggggggaaaaataaatcatcaacagcagt
aaagaatgatcagagaggcttccctggaaaggtgtatgtgaccagagaga
acagttcagtgaaagagctttggagattaataatggggatcatcatagga
tagcagtggggacccatgctatagtgcatgcccctggctgcaccaatccc
tgttagttcataagaatggcaggaattcgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6367172_6367581
seq2: B6Ng01-028D07.b_45_454

seq1  GAATTCTGCATGTTAAATTGGGCTTGGTGGTACATCACTAATAACCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGTTAAATTGGGCTTGGTGGTACATCACTAATAACCCCAG  50

seq1  CGATAGGGAGGTAGAGGCAGGAGAATCAGAAGTTCAAGGCCACATAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGGGAGGTAGAGGCAGGAGAATCAGAAGTTCAAGGCCACATAGTGA  100

seq1  GTTCACAGTCAGTCTGGACCATAGATCTGACCTGGGGGGGGGGGGCGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGTCAGTCTGGACCATAGATCTGACCTGGGGGGGGGGGGCGGGG  150

seq1  AACAATAGTAAACAACTCTGCATGTATGATTTTCTTATTTTTACCTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGTAAACAACTCTGCATGTATGATTTTCTTATTTTTACCTTCAC  200

seq1  TGAAATCCTGAGAGTGGTGGCAGTTGTTTCCTATCATTCCCACTTAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCTGAGAGTGGTGGCAGTTGTTTCCTATCATTCCCACTTAGCAG  250

seq1  AATGGAAAACCGAGGTACAGGAATATTAAGTAATATCCCTAGATGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAACCGAGGTACAGGAATATTAAGTAATATCCCTAGATGACACA  300

seq1  GCCAGCACCTAACTCCATCTATGGAACCTCGGACTCCAGGCTGACATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACCTAACTCCATCTATGGAACCTCGGACTCCAGGCTGACATGCC  350

seq1  TTTGCCTGAGCTCCTTCCAGTCTCCTCTCACCCTAGAGAAGCATGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGAGCTCCTTCCAGTCTCCTCTCACCCTAGAGAAGCATGTGGGG  400

seq1  TGGGGTGGGG  410
      ||||||||||
seq2  TGGGGTGGGG  410

seq1: chr7_6495061_6496155
seq2: B6Ng01-028D07.g_68_1149 (reverse)

seq1  AGCCGAAATCCTGCCATTGCTGTTTGACACTAACCAGGGATTGGTGCAGC  50
      | ||||| |||||||||| || | ||| ||||| ||||||||||||||||
seq2  ACCCGAATTCCTGCCATT-CT-TATGA-ACTAA-CAGGGATTGGTGCAGC  46

seq1  CAGTGGCATGCATCTATTGCATTGAGTCCCCACTGCCTATTCCTATGCTG  100
      ||| |||||||| |||| ||| || |||||||||| ||| ||||||| ||
seq2  CAGGGGCATGCA-CTATAGCA-TGGGTCCCCACTG-CTA-TCCTATGATG  92

seq1  ATCCCCAATACTCATTCTCCAAAGCTCTTTCACCTGAGCTGTTCTCTCTG  150
      ||||||| || | | ||||||||||||||||| |||| ||||||||||||
seq2  ATCCCCATTA-TTAATCTCCAAAGCTCTTTCA-CTGAACTGTTCTCTCTG  140

seq1  GTCACATACCACCTTTCCAGGGAAGCCTCTCTTGATCATTCTTTACTGCT  200
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  GTCACATA-CACCTTTCCAGGGAAGCCTCTC-TGATCATTCTTTACTGCT  188

seq1  GTTGATGATTTATTTATTCCCCCCCGCCCCGCTCACAGCACCTGTATCCT  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTGATGATTTATTT-TTCCCCCCCGCCCCGCTCACAGCACCTGTATCCT  237

seq1  ACTACCCCCTTTCTAGAGTTCAAAACTTGCTTTAAGAGAAATTTCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCCTTTCTAGAGTTCAAAACTTGCTTTAAGAGAAATTTCAGGTT  287

seq1  AACAGAGGAGTGTGAAGATAGTATAGACTATTCCCATAAACACCTGAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAGTGTGAAGATAGTATAGACTATTCCCATAAACACCTGAGCG  337

seq1  TATGACATCCCACCCGTACACAGCACATTAAATACAATCAGTAACTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACATCCCACCCGTACACAGCACATTAAATACAATCAGTAACTCAGT  387

seq1  AATGACATTTATGCAGATTTTCTTTGATCTCACCTCACATGCTTCTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTTATGCAGATTTTCTTTGATCTCACCTCACATGCTTCTGCTC  437

seq1  TGGCATCTCATGACACCTGTCATTTAGGTGTCACATCTCCTCAGGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTCATGACACCTGTCATTTAGGTGTCACATCTCCTCAGGCTCCT  487

seq1  CTGGGCTTTTGGGTTGAGTGATGTTGACCAGTCTGAAGAACATTGTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTTTGGGTTGAGTGATGTTGACCAGTCTGAAGAACATTGTTCAG  537

seq1  ATATATTATAAGATGTTGTTTCTCTAATGCAATTTATCTGGTTTTGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATAAGATGTTGTTTCTCTAATGCAATTTATCTGGTTTTGTTCC  587

seq1  ATTGTTAAATTGAGGTTGGGGTAAATGTACTTGGGATCTATGTTCTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAATTGAGGTTGGGGTAAATGTACTTGGGATCTATGTTCTGGGC  637

seq1  AAATATCAAATACAGACCATAATTTAATGAAATATAGCTGCTGTGCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAATACAGACCATAATTTAATGAAATATAGCTGCTGTGCTGTG  687

seq1  CATTAGAAGCCCAGAACTTTAAAAATTTTATAACCAAAATCTTGTACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAGCCCAGAACTTTAAAAATTTTATAACCAAAATCTTGTACCTT  737

seq1  TTCACAGACATCACTCCAGTCCACTCTATCATACTTTGTTACTGTAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGACATCACTCCAGTCCACTCTATCATACTTTGTTACTGTAATCT  787

seq1  CATATCTAAAAAACTTATTCACAGAAACATCAAATTTTAGTGTCTTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTAAAAAACTTATTCACAGAAACATCAAATTTTAGTGTCTTGCTT  837

seq1  ATTTCTCTTAACATGATGTTCTCGAGGCTTGTTGGAAAGATTTGCTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTAACATGATGTTCTCGAGGCTTGTTGGAAAGATTTGCTTCCC  887

seq1  GCTTATTTCTGTGTGCACACACTTCATGTGGGTGGATGGGTGCAGGTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTCTGTGTGCACACACTTCATGTGGGTGGATGGGTGCAGGTGAA  937

seq1  CATGTGTTCATGGAAGCCAGAAGTGACATTTAGTATCTTTTTTAAAAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCATGGAAGCCAGAAGTGACATTTAGTATCTTTTTTAAAAGAT  987

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGGTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGGTTTT  1037

seq1  TTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAATTC  1082