BAC Information

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BAC

Clone NameB6Ng01-028H14
Chromosome7 (Build37)
Map Location 16,856,910 - 16,985,679
singlet/doubletdoublet
Overlap gene2610014I16Rik, Ccdc9, Bbc3, Sae1
Upstream geneEG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1
Downstream geneBC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028H14.bB6Ng01-028H14.g
ACCDH858940DH858941
length8581,155
definitionDH858940|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H14, 5' end.DH858941|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,984,822 - 16,985,679)(16,856,910 - 16,858,076)
sequence
gaattcacacaaaatggcggcacagccgggacaagcacggaggctgaagc
cggaggaagggcgtggagggagggggtagcggagaggccggaggagcgtc
acgtggagaagggcagagccagcccgcccgaaagtcggcgaaaagagccg
aagcggaagggcgaggcggaggagagggcacggaaagagccgaacacagc
tgagattaacgagactctgaaaaaagccggaaagagccgagggaagatct
aggtcactgcagcaacgcggagcggatcagagacccacctaaaggaccaa
gggtggtcgtgggggcggggctagggaaggccgggagagccggaaatagc
cgaagcgcttcgggatgggagaagcccccccctgggggggggcgaggcga
gagtccggaaagagccgaagtcagggaagggatcccgggaggaggcggaa
gtagccgaaatacattgagcggagcgaataggaattagcgaataagctga
acgggtggggctagaaaggcgattaattaactcaagggtaaatgactttc
aggaactcgcccccaaagcaagcgagaagagccgaaaattgctagtttga
aggaaggcgggaagagcccaaagttttaggtgggagaataatgggagggg
aaaaaatttaaccgaaagccgggagaccggtcctaggagtcggtcgttcc
cgaagaggggctggagaagaggctgtctggagatgacgtcactacataac
tcagccagtggcgttatcctttggaggcgataagtgtggtgcatactgtg
aggccgaaatgtagatcttgatctgtttttttaaccgctaaaaagatgtt
tgaagttt
gaattcaaagcccacaagctggactttgcatagaggtacacatctgcaat
cccaacccttagaagacagaggaaggaggtctgctgagaacccaaatccc
ttgccacaaagtgggagggggtgactcagtgggaaagcactagagagacg
gtgtgagccagtagacacaggagcacggtgacaatatggagacactctaa
aaacagagaaagagaaaagcaaagagaaggtagcagagggacacaaaaaa
ggttgaggggccaaggggctggaggaaaaaccaggaagcagaagggaggc
caaaaaggacaggcaagaggacccctccccccaactcactgcttggtggt
gtgcagtctttgagctgacaggctatgcccagggatacaggctgtgactc
tctgaaagggctgaaggacaaagtggagacagagcagaaaccaacgctgt
tctcaggtttcgatcactagtttaattctgagcaacaatgtgttgtcttc
cttttacaagaccagagagatttaagtacattgctgtacatcatcccgtg
ggggatgctggtaggacagaagggaaccagcaggacaggtaacactccca
tctgacaagaggcctcaggttcctgatgctgtccagcctagggggaaggc
aggccataaaggaaaccccttcttgcagctggccagcagagtatatccca
ggcctgcctacggccaagccacagtcatgggtaagggaaaatggactcaa
tcgcatgacttctttatcagaagctacaccagtctcaacatggcaccaac
agcaatgcagaccagttttggtttggttcagctatatgctccacacttcc
aaagcagcaaatgtcaccacccaaatcaggacaagctagcttacgggtga
catcctctacccctgccattgcaaactataccaactgcagtttcagcacg
caccactgtctccgaagctatacgagatgacatcccgaaactggtaaggc
ctttacagtatctgacctccatggccccgaaactggcaagctgcttcctc
cccattcaatctcaaaaataatggtgagcatgagagaagaaagcttttaa
ggcccgtcgctctggactaaagggacagcgtcgaagccacgacacagacc
aggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16984822_16985679
seq2: B6Ng01-028H14.b_42_899 (reverse)

seq1  AAACTTCAAAATACTTTTGTTAGCGGTTTAAGAACCCGGTCAAGATCTCC  50
      ||||||||||   ||||  ||||||||| || || | | ||||||||| |
seq2  AAACTTCAAACATCTTT--TTAGCGGTTAAAAAAACAGATCAAGATCTAC  48

seq1  ACTTCGCCCTCACAGTTGGCACCACCCTTCTCGCCTCC-AAGGATGACGC  99
      | |||| |||||||||  ||||||| ||| |||||||| |||||| ||||
seq2  ATTTCGGCCTCACAGTATGCACCACACTTATCGCCTCCAAAGGATAACGC  98

seq1  CACTGGCTGAGTTATGTAGTGACGTCATCTCCGGGCCGCCTCTTCTCCAG  149
      |||||||||||||||||||||||||||||||| | | |||||||||||||
seq2  CACTGGCTGAGTTATGTAGTGACGTCATCTCCAGACAGCCTCTTCTCCAG  148

seq1  CCCCTCTTCGGGAACGACCGACTCCTGGGACCGGTCT-CCGGCTTTCGGT  198
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CCCCTCTTCGGGAACGACCGACTCCTAGGACCGGTCTCCCGGCTTTCGGT  198

seq1  TAAATTTTTTCCCCTCCCATTATTCTCCCACCTAAAACTTTGGGCTCTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTTCCCCTCCCATTATTCTCCCACCTAAAACTTTGGGCTCTTC  248

seq1  CCGCCTTCCTTCAAACTAGCAATTTTCGGCTCTTCTCGCTTGCTTTGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTCCTTCAAACTAGCAATTTTCGGCTCTTCTCGCTTGCTTTGGGG  298

seq1  GCGAGTTCCTGAAAGTCATTTACCCTTGAGTTAATTAATCGCCTTTCTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTTCCTGAAAGTCATTTACCCTTGAGTTAATTAATCGCCTTTCTAG  348

seq1  CCCCACCCGTTCAGCTTATTCGCTAATTCCTATTCGCTCCGCTCAATGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCGTTCAGCTTATTCGCTAATTCCTATTCGCTCCGCTCAATGTA  398

seq1  TTTCGGCTACTTCCGCCTCCTCCCGGGATCCCTTCCCTGACTTCGGCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGCTACTTCCGCCTCCTCCCGGGATCCCTTCCCTGACTTCGGCTCT  448

seq1  TTCCGGACTCTCGCCTCGCCCCCCCCCAGGGGGGGGCTTCTCCCATCCCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGACTCTCGCCTCGCCCCCCCCCAGGGGGGGGCTTCTCCCATCCCG  498

seq1  AAGCGCTTCGGCTATTTCCGGCTCTCCCGGCCTTCCCTAGCCCCGCCCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCTTCGGCTATTTCCGGCTCTCCCGGCCTTCCCTAGCCCCGCCCCC  548

seq1  ACGACCACCCTTGGTCCTTTAGGTGGGTCTCTGATCCGCTCCGCGTTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCACCCTTGGTCCTTTAGGTGGGTCTCTGATCCGCTCCGCGTTGCT  598

seq1  GCAGTGACCTAGATCTTCCCTCGGCTCTTTCCGGCTTTTTTCAGAGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACCTAGATCTTCCCTCGGCTCTTTCCGGCTTTTTTCAGAGTCTC  648

seq1  GTTAATCTCAGCTGTGTTCGGCTCTTTCCGTGCCCTCTCCTCCGCCTCGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTCAGCTGTGTTCGGCTCTTTCCGTGCCCTCTCCTCCGCCTCGC  698

seq1  CCTTCCGCTTCGGCTCTTTTCGCCGACTTTCGGGCGGGCTGGCTCTGCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGCTTCGGCTCTTTTCGCCGACTTTCGGGCGGGCTGGCTCTGCCC  748

seq1  TTCTCCACGTGACGCTCCTCCGGCCTCTCCGCTACCCCCTCCCTCCACGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACGTGACGCTCCTCCGGCCTCTCCGCTACCCCCTCCCTCCACGC  798

seq1  CCTTCCTCCGGCTTCAGCCTCCGTGCTTGTCCCGGCTGTGCCGCCATTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCGGCTTCAGCCTCCGTGCTTGTCCCGGCTGTGCCGCCATTTT  848

seq1  GTGTGAATTC  858
      ||||||||||
seq2  GTGTGAATTC  858

seq1: chr7_16856910_16858076
seq2: B6Ng01-028H14.g_69_1223

seq1  GAATTCAAAGCCCACAAGCTGGACTTTGCATAGAGGTACACATCTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCCACAAGCTGGACTTTGCATAGAGGTACACATCTGCAAT  50

seq1  CCCAACCCTTAGAAGACAGAGGAAGGAGGTCTGCTGAGAACCCAAATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCTTAGAAGACAGAGGAAGGAGGTCTGCTGAGAACCCAAATCCC  100

seq1  TTGCCACAAAGTGGGAGGGGGTGACTCAGTGGGAAAGCACTAGAGAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACAAAGTGGGAGGGGGTGACTCAGTGGGAAAGCACTAGAGAGACG  150

seq1  GTGTGAGCCAGTAGACACAGGAGCACGGTGACAATATGGAGACACTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCCAGTAGACACAGGAGCACGGTGACAATATGGAGACACTCTAA  200

seq1  AAACAGAGAAAGAGAAAAGCAAAGAGAAGGTAGCAGAGGGACACAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAAAGAGAAAAGCAAAGAGAAGGTAGCAGAGGGACACAAAAAA  250

seq1  GGTTGAGGGGCCAAGGGGCTGGAGGAAAAACCAGGAAGCAGAAGGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGGGGCCAAGGGGCTGGAGGAAAAACCAGGAAGCAGAAGGGAGGC  300

seq1  CAAAAAGGACAGGCAAGAGGACCCCTCCCCCCAACTCACTGCTTGGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGACAGGCAAGAGGACCCCTCCCCCCAACTCACTGCTTGGTGGT  350

seq1  GTGCAGTCTTTGAGCTGACAGGCTATGCCCAGGGATACAGGCTGTGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTCTTTGAGCTGACAGGCTATGCCCAGGGATACAGGCTGTGACTC  400

seq1  TCTGAAAGGGCTGAAGGACAAAGTGGAGACAGAGCAGAAACCAACGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGGGCTGAAGGACAAAGTGGAGACAGAGCAGAAACCAACGCTGT  450

seq1  TCTCAGGTTTCGATCACTAGTTTAATTCTGAGCAACAATGTGTTGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTTTCGATCACTAGTTTAATTCTGAGCAACAATGTGTTGTCTTC  500

seq1  CTTTTACAAGACCAGAGAGATTTAAGTACATTGCTGTACATCATCCCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAAGACCAGAGAGATTTAAGTACATTGCTGTACATCATCCCGTG  550

seq1  GGGGATGCTGGTAGGACAGAAGGGAACCAGCAGGACAGGTAACACTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGCTGGTAGGACAGAAGGGAACCAGCAGGACAGGTAACACTCCCA  600

seq1  TCTGACAAGAGGCCTCAGGTTCCTGATGCTGTCCAGCCTAGGGGGAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGAGGCCTCAGGTTCCTGATGCTGTCCAGCCTAGGGGGAAGGC  650

seq1  AGGCCATAAAGGAAACCCCTTCTTGCAGCTGGCCAGCAGAGTATATCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATAAAGGAAACCCCTTCTTGCAGCTGGCCAGCAGAGTATATCCCA  700

seq1  GGCCTGCCTACGGCCAAGCCACAGTCATGGGTAAGGGAAAATGGACTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCTACGGCCAAGCCACAGTCATGGGTAAGGGAAAATGGACTCAA  750

seq1  TCGCATGACTTCTTTATCAGAAGCTACACCAGTCTCAACATGGCACCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATGACTTCTTTATCAGAAGCTACACCAGTCTCAACATGGCACCAAC  800

seq1  AGCAATGCAGACCAGTTTTGGTTTGGTTCAGCTATATGCTCCACACTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCAGACCAGTTTTGGTTTGGTTCAGCTATATGCTCCACACTTCC  850

seq1  AAAGCAGCAAATGTCACCACCCAAACCAGGACAAGCTAGCTTACGGGTGA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGCAGCAAATGTCACCACCCAAATCAGGACAAGCTAGCTTACGGGTGA  900

seq1  CATCCTCTACCCCTGCCATTGCAAACTATACCAACTGCAGTTTCCAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATCCTCTACCCCTGCCATTGCAAACTATACCAACTGCAGTTT-CAGCAC  949

seq1  GCACCACTGTCTCCGAAGCTATACGAGATGACACCCCGAAAACTGGTAAG  1000
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  GCACCACTGTCTCCGAAGCTATACGAGATGACATCCCG-AAACTGGTAAG  998

seq1  GCCTTTACAGTATCTGACCTTCAATGGCCCCGAAAACTGGCAAGCCGCTT  1050
      ||||||||||||||||||| || ||||||||| |||||||||||| ||||
seq2  GCCTTTACAGTATCTGACC-TCCATGGCCCCG-AAACTGGCAAGCTGCTT  1046

seq1  -CTCCCCATTCCAACCCAAAAATTACATGTGAGCAATGAGAGAGGAAAGC  1099
       |||||||||| | | |||||| ||   |||||| |||||||| ||||||
seq2  CCTCCCCATTCAATCTCAAAAA-TAATGGTGAGC-ATGAGAGAAGAAAGC  1094

seq1  CTTTAAGGCCGCGCGGCCACGGAGCTAGAAGGGACCAGCGGCCGAGGCCA  1149
       ||||||||| ||  ||   ||| ||| |||||| |||| | ||| ||| 
seq2  TTTTAAGGCC-CGTCGCTCTGGA-CTA-AAGGGA-CAGC-GTCGAAGCC-  1138

seq1  ACGACCACAGACCAGGTA  1167
      |||| |||||||||||||
seq2  ACGA-CACAGACCAGGTA  1155