BAC Information

Click to search

BAC

Clone NameB6Ng01-028J23
Chromosome7 (Build37)
Map Location 4,398,785 - 4,554,170
singlet/doubletdoublet
Overlap geneEps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh
Upstream geneCacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13
Downstream geneLOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028J23.bB6Ng01-028J23.g
ACCDH859053DH859054
length378953
definitionDH859053|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J23, 5' end.DH859054|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,553,793 - 4,554,170)(4,398,785 - 4,399,739)
sequence
cacttatgccatgcatgaccgtcctcccaactgaacagagcaccagcgtt
ggggtgatctttatcataccccatccccatcctcctctccttggtcaaag
tttaaggaaaggacagagatcaatcaagagagtctcagtcagtcctgcta
gctccacctcccgagtctcaccttacctgagctaattcttgcctacctgg
ttttttctctagggtttgtatggttgttctgtggtcagggcagctggtga
gtagccctacctttaaccttgtccttgacaaaagatgagatcctagttcc
cctgaatcttatggttcacagtgggccagggataagggcagtttctcagg
ttggagctgggtggtggtggtggtggtg
gaattcaatccttaccacacagtttccctgacagtaacagtaaaggctga
ttctcctgggactggaaaggtaggtcagtggcacttgctgctgctgcaga
ggaccccagcacccaacaaccatgtctaactccagtttcagggattcaga
cgccctcttctggccttcccaggcactgcacaaaaatggctcagagacaa
ctcaagcaggtacaacattcacacataagataaataaataacttttcatt
taaaaagagtgtttttcaaatgtctgagagccttcatctaccacaaatgt
gaggaggtgtcctagttagggttactattgctatgataaaacaccatgac
caaaagcgagttggggaggaagaggataattagaaaggattacaggctgt
gatccagctagtccaacaatggctgtctaccaatgaccaaagaattcagt
agttgttcagtccaagaggctggtcttcagtgtgtaccagaatcctgaag
aatgacactccaatgacagtgaaacaatggacttggaaagaccgtggttg
gaaaattggcacctggagttgggtgttgctgtgacagacctgaccatgtg
tttcagggaggattgtgaaagaaccttggaactctgggcctttgagtgtt
gagagcttagtgggctgctctgtggaagcttagaagataagaatgttgag
agcacaccagccagcagcactccttcacggcctctgcatcagctcctccc
tcccggttcctgccccgtttgagttcctgtcttgacttcctatgatgatg
aacatgatatggacatgtaagtcaataaatccttcctcttcaacttggct
ttgatcatggtgtttatctgactaaaatggtaagaagaagacaagcagaa
aaaccacagtggggtgctactttttgatttgtttgtttgattggaaacag
ggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4553793_4554170
seq2: B6Ng01-028J23.b_52_429 (reverse)

seq1  CACCACCACCACCACCACCCAGCTCCAACCTGAGAAACTGCCCTTATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCACCACCACCCAGCTCCAACCTGAGAAACTGCCCTTATCCC  50

seq1  TGGCCCACTGTGAACCATAAGATTCAGGGGAACTAGGATCTCATCTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCACTGTGAACCATAAGATTCAGGGGAACTAGGATCTCATCTTTTG  100

seq1  TCAAGGACAAGGTTAAAGGTAGGGCTACTCACCAGCTGCCCTGACCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACAAGGTTAAAGGTAGGGCTACTCACCAGCTGCCCTGACCACAG  150

seq1  AACAACCATACAAACCCTAGAGAAAAAACCAGGTAGGCAAGAATTAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCATACAAACCCTAGAGAAAAAACCAGGTAGGCAAGAATTAGCTC  200

seq1  AGGTAAGGTGAGACTCGGGAGGTGGAGCTAGCAGGACTGACTGAGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGTGAGACTCGGGAGGTGGAGCTAGCAGGACTGACTGAGACTCT  250

seq1  CTTGATTGATCTCTGTCCTTTCCTTAAACTTTGACCAAGGAGAGGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGATCTCTGTCCTTTCCTTAAACTTTGACCAAGGAGAGGAGGAT  300

seq1  GGGGATGGGGTATGATAAAGATCACCCCAACGCTGGTGCTCTGTTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGGGTATGATAAAGATCACCCCAACGCTGGTGCTCTGTTCAGTT  350

seq1  GGGAGGACGGTCATGCATGGCATAAGTG  378
      ||||||||||||||||||||||||||||
seq2  GGGAGGACGGTCATGCATGGCATAAGTG  378

seq1: chr7_4398785_4399739
seq2: B6Ng01-028J23.g_67_1019

seq1  GAATTCAATCCTTACCACACAGTTTCCCTGACAGTAACAGTAAAGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTTACCACACAGTTTCCCTGACAGTAACAGTAAAGGCTGA  50

seq1  TTCTCCTGGGACTGGAAAGGTAGGTCAGTGGCACTTGCTGCTGCTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGGGACTGGAAAGGTAGGTCAGTGGCACTTGCTGCTGCTGCAGA  100

seq1  GGACCCCAGCACCCAACAACCATGTCTAACTCCAGTTTCAGGGATTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCAGCACCCAACAACCATGTCTAACTCCAGTTTCAGGGATTCAGA  150

seq1  CGCCCTCTTCTGGCCTTCCCAGGCACTGCACAAAAATGGCTCAGAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCTTCTGGCCTTCCCAGGCACTGCACAAAAATGGCTCAGAGACAA  200

seq1  CTCAAGCAGGTACAACATTCACACATAAGATAAATAAATAACTTTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAGGTACAACATTCACACATAAGATAAATAAATAACTTTTCATT  250

seq1  TAAAAAGAGTGTTTTTCAAATGTCTGAGAGCCTTCATCTACCACAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGTGTTTTTCAAATGTCTGAGAGCCTTCATCTACCACAAATGT  300

seq1  GAGGAGGTGTCCTAGTTAGGGTTACTATTGCTATGATAAAACACCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTGTCCTAGTTAGGGTTACTATTGCTATGATAAAACACCATGAC  350

seq1  CAAAAGCGAGTTGGGGAGGAAGAGGATAATTAGAAAGGATTACAGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCGAGTTGGGGAGGAAGAGGATAATTAGAAAGGATTACAGGCTGT  400

seq1  GATCCAGCTAGTCCAACAATGGCTGTCTACCAATGACCAAAGAATTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCTAGTCCAACAATGGCTGTCTACCAATGACCAAAGAATTCAGT  450

seq1  AGTTGTTCAGTCCAAGAGGCTGGTCTTCAGTGTGTACCAGAATCCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCAGTCCAAGAGGCTGGTCTTCAGTGTGTACCAGAATCCTGAAG  500

seq1  AATGACACTCCAATGACAGTGAAACAATGGACTTGGAAAGACCGTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACTCCAATGACAGTGAAACAATGGACTTGGAAAGACCGTGGTTG  550

seq1  GAAAATTGGCACCTGGAGTTGGGTGTTGCTGTGACAGACCTGACCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGCACCTGGAGTTGGGTGTTGCTGTGACAGACCTGACCATGTG  600

seq1  TTTCAGGGAGGATTGTGAAAGAACCTTGGAACTCTGGGCCTTTGAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAGGATTGTGAAAGAACCTTGGAACTCTGGGCCTTTGAGTGTT  650

seq1  GAGAGCTTAGTGGGCTGCTCTGTGGAAGCTTAGAAGATAAGAATGTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTAGTGGGCTGCTCTGTGGAAGCTTAGAAGATAAGAATGTTGAG  700

seq1  AGCACACCAGCCAGCAGCACTCCTTCACGGCCTCTGCATCAGCTCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCAGCCAGCAGCACTCCTTCACGGCCTCTGCATCAGCTCCTCCC  750

seq1  TCCCGGTTCCTGCCCCGTTTGAGTTCCTGTCTTGACTTCCTATGATGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTTCCTGCCCCGTTTGAGTTCCTGTCTTGACTTCCTATGATGATG  800

seq1  AACATGATATGGACATGTAAGTCAATAAATCCTTTCTTCTTCAACTT-GC  849
      |||||||||||||||||||||||||||||||| ||| |||||||||| ||
seq2  AACATGATATGGACATGTAAGTCAATAAATCC-TTCCTCTTCAACTTGGC  849

seq1  TTTGATCATGGTGTTTCATCTGACTAAAATGGTAAGAAGAAGACAAGCAG  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGATCATGGTGTTT-ATCTGACTAAAATGGTAAGAAGAAGACAAGCAG  898

seq1  AAAAACCACAGT-GGGTGCTACATTTTTTGTTTTGTTTGTTTGTTTGGAA  948
      |||||||||||| |||||||||  |||||| |||||||||||| ||||||
seq2  AAAAACCACAGTGGGGTGCTAC--TTTTTGATTTGTTTGTTTGATTGGAA  946

seq1  ACAGGGC  955
      |||||||
seq2  ACAGGGC  953