BAC Information

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BAC

Clone NameB6Ng01-028L19
Chromosome4 (Build37)7 (Build37)
Map Location 86,430,627 - 86,431,72725,679,214 - 25,679,706
singlet/doubletsingletsinglet
Overlap geneDennd4c
Upstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685
Downstream geneRps6, Asah3l, Slc24a2, Mllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028L19.bB6Ng01-028L19.g
ACCDH859137DH859138
length1,087910
definitionDH859137|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L19, 5' end.DH859138|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,430,627 - 86,431,727)(25,679,214 - 25,679,706)
sequence
gaattcagaaatccacctgccagggggctggagagatggctcagaggtta
agagcactgactgctctttcagaggtcctgagttcaattcccagcaacca
catagagatagtggttcagaaccatctgtaatgggatctaatgccctctt
ctggtgtgtctgaagacagctacagtgtactcatcatatatataaaataa
atagataaaatctttaaaaaaaaaaataagaagtccacctgcctctgcct
ccctagtgctgggattaaaggcatgtgccaccatgcccggctcagggtta
tgtatcttaagagaaaaataaaattaatgttggtagaagaggtggctcag
tggttaatttcttgtcatgcaagtctgaggacccacgtttgaatccatag
acccacataaagtcagatatagtagtacatatagtaacctcagtggtaac
tccagtggcaagatgggatgcaggaataggagagtcccagaagcttgcta
ggctacttagctgggcatatataatggcaaacagtagagaccctgtgtca
cggtgcaaagtgccacggcacatgtaccttcacatgttggtacactgaaa
aaaaattgacacatatgaccaacgtatatttctgtatagtcagtgttctg
gaaaacagcatacaagcaagtacaagttgagtgaggtccttagcatactc
tagatgttgggtaaaaatacatggagtggttaaaagtgagaacaaatcaa
aagaaggttgccttttaaaaaaaatgtatgtgtgagtgtaggaatacatg
tgttgtgtctgcctgtagaggtcggagggcaacttttaggagtcagttct
ctcctattatggaagttggcagtttggactcagtgtcagacttacaaggt
taaatgtgcctgctaagctaccccacctgcataaaaggtggccctttctc
ttttttattctgttctttcctattcggttctgctctttttggcttccctc
tctttctttcttattgagataatgatgcttaaaaattaatcacactgtgt
ggatgatctacatggattgcatcaaatctgtgagttt
ggagctgatggagaggccatggagggatgtttcttactgacttgctcagc
ctgctctcttaaagaacccaagactaccagcccagagatggtaccaccta
caaggggccctctcactggatcactaattgagaaaatgccttacagctgg
atctcatggaggcatttccccaactaaagctcctttctctgtgataactc
cagcctgtgtcaagttgacacacaaaaccagccagtacactgaccaataa
gccctgaacaaagccttcaattcatgagcttgtttatggtattttttatt
attattattaatttttaattaggtattttcttcatttacatttcaaatgc
tatcccaaaagtctcccataccctcaacccccccacatactctcctaccc
acccactcccacttcttggccctggcattcccctgtactgaggcatataa
agtttgcatgaccaaggggcctctctttccactgatggccgactaggcca
tcttctgttacatatgcagctagagacacgagctccaggggtactgggta
gttcatattgttgttccacctatagggttgcagatccctttagctccttg
ggtactttctctagatcctccattgggggtcctgtgttccatccaataac
tgactgtgagcatccacttctgtgtttgccaggcaccgcatagcctcaca
aaagacagctatatcagggtccttttcagcaaaatcttgctggcgtatgc
aatggtgtcagcatttggaggctgattgtgggatggatccccgggtgtgg
cggtctctagatggtccatccttttgtctcggctccaaactttgtctctg
taactccttccatgggtgtttgttccaattctaagaaggggcaaagtgtc
cacactttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86430627_86431727
seq2: B6Ng01-028L19.b_44_1130

seq1  GAATTCAGAAATCCACCTGCCAGGGGGCTGGAGAGATGGCTCAGAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCCACCTGCCAGGGGGCTGGAGAGATGGCTCAGAGGTTA  50

seq1  AGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  100

seq1  CATAGAGATAGTGGTTCAGAACCATCTGTAATGGGATCTAATGCCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGATAGTGGTTCAGAACCATCTGTAATGGGATCTAATGCCCTCTT  150

seq1  CTGGTGTGTCTGAAGACAGCTACAGTGTACTCATCATATATATAAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGAAGACAGCTACAGTGTACTCATCATATATATAAAATAA  200

seq1  ATAGATAAAATCTTTAAAAAAAAAAATAAGAAGTCCACCTGCCTCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAAATCTTTAAAAAAAAAAATAAGAAGTCCACCTGCCTCTGCCT  250

seq1  CCCTAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCGGCTCAGGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCGGCTCAGGGTTA  300

seq1  TGTATCTTAAGAGAAAAATAAAATTAATGTTGGTAGAAGAGGTGGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTAAGAGAAAAATAAAATTAATGTTGGTAGAAGAGGTGGCTCAG  350

seq1  TGGTTAATTTCTTGTCATGCAAGTCTGAGGACCCACGTTTGAATCCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATTTCTTGTCATGCAAGTCTGAGGACCCACGTTTGAATCCATAG  400

seq1  ACCCACATAAAGTCAGATATAGTAGTACATATAGTAACCTCAGTGGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATAAAGTCAGATATAGTAGTACATATAGTAACCTCAGTGGTAAC  450

seq1  TCCAGTGGCAAGATGGGATGCAGGAATAGGAGAGTCCCAGAAGCTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGCAAGATGGGATGCAGGAATAGGAGAGTCCCAGAAGCTTGCTA  500

seq1  GGCTACTTAGCTGGGCATATATAATGGCAAACAGTAGAGACCCTGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTTAGCTGGGCATATATAATGGCAAACAGTAGAGACCCTGTGTCA  550

seq1  CGGTGCAAAGTGCCACGGCACATGTACCTTCACATGTTGGTACACTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCAAAGTGCCACGGCACATGTACCTTCACATGTTGGTACACTGAAA  600

seq1  AAAAATTGACACATATGACCAACGTATATTTCTGTATAGTCAGTGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGACACATATGACCAACGTATATTTCTGTATAGTCAGTGTTCTG  650

seq1  GAAAACAGCATACAAGCAAGTACAAGTTGAGTGAGGTCCTTAGCATACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCATACAAGCAAGTACAAGTTGAGTGAGGTCCTTAGCATACTC  700

seq1  TAGATGTTGGGTAAAAATACATGGAGTGGTTAAAAGTGAGAACAAATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTGGGTAAAAATACATGGAGTGGTTAAAAGTGAGAACAAATCAA  750

seq1  AAGAAGGTTGCCTTTTAAAAAAAATGTATGTGTGAGTGTAGGAATACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTTGCCTTTTAAAAAAAATGTATGTGTGAGTGTAGGAATACATG  800

seq1  TGTTGTGTCTGCCTGTAGAGGTCGGAGGGCAACTTTTAGGAGTCAGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTCTGCCTGTAGAGGTCGGAGGGCAACTTTTAGGAGTCAGTTCT  850

seq1  CTCCTATTATGGAAGTTGGCAGTTTGGACTCAGTGTCAGACTTACAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTATGGAAGTTGGCAGTTTGGACTCAGTGTCAGACTTACAAGGT  900

seq1  TAAATGTGCCTGCTAAGCTACCCCACCTGCATAAAAGGTTGCCCTTTCCT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  TAAATGTGCCTGCTAAGCTACCCCACCTGCATAAAAGGTGGCCCTTT-CT  949

seq1  CTTTTTCTATTCTGTTCTTTCCTATTCTGTTCTGCTCTTTTCTGGTCTTC  1000
      |||||| |||||||||||||||||||| ||||||||||||| ||| ||||
seq2  CTTTTT-TATTCTGTTCTTTCCTATTCGGTTCTGCTCTTTT-TGG-CTTC  996

seq1  CCTTCTCTTTCTTTCTTATTGTAGATAATGTATGCTTAAAATATTTAATC  1050
      || |||||||||||||||||| |||||||| |||||||||  | ||||||
seq2  CC-TCTCTTTCTTTCTTATTG-AGATAATG-ATGCTTAAA--AATTAATC  1041

seq1  ACACTGTGTGGGATGATCTAGATGGATTTGCATCAAAATCTGGTTGAGTT  1100
      ||||||||| |||||||||| ||||| ||||||| |||||||  ||||||
seq2  ACACTGTGT-GGATGATCTACATGGA-TTGCATC-AAATCTG--TGAGTT  1086

seq1  T  1101
      |
seq2  T  1087

seq1: chr7_25679214_25679706
seq2: B6Ng01-028L19.g_421_930 (reverse)

seq1  TACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGAC  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACAGAGACAAAGTTTGGAGCCGAGACAAAAGGATGGACCATCTAGAGAC  50

seq1  TGCCATACCTGGGGATCCATCCCATAATCAGCCTCCAAACGTTGACACCA  100
       |||| ||| |||||||||||||| |||||||||||||| | ||||||||
seq2  CGCCACACCCGGGGATCCATCCCACAATCAGCCTCCAAATGCTGACACCA  100

seq1  TTGCATACACCTTTTCAGCAAGATTTTGCTG-AAAGGACCCTGATATAGC  149
      |||||||| |     |||||||||||||||| ||||||||||||||||||
seq2  TTGCATACGC-----CAGCAAGATTTTGCTGAAAAGGACCCTGATATAGC  145

seq1  TGTCTCTTGTGAGACTATTCTTGGGCCTAGCAAACACAGAAGTGGATGCC  199
      ||||| ||||||| |||| |  | |||| |||||||||||||||||||| 
seq2  TGTCTTTTGTGAGGCTATGC-GGTGCCTGGCAAACACAGAAGTGGATGCT  194

seq1  CATAGTCATTTATAGGATGGATCACAGGGCCCCTAACGGAGGAGCTAGAG  249
      || ||||| |||| ||||||| |||||| |||| || |||||| ||||||
seq2  CACAGTCAGTTATTGGATGGAACACAGGACCCCCAATGGAGGATCTAGAG  244

seq1  AAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACA  294

seq1  ATATGAACTAACCAGTACCCCCCAGAGCTCATGACTCTAGCTGCATATGT  349
      |||||||||| |||||| ||||  |||||| || ||||||||||||||||
seq2  ATATGAACTACCCAGTA-CCCCTGGAGCTCGTGTCTCTAGCTGCATATGT  343

seq1  ATCAGAAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCCCATTGGTC  399
      | ||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AACAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCCTTGGTC  393

seq1  TTGCAAATTTTATATGCCTAAGTACAGGGGAATGCCAGGGCCAAGAAGTG  449
       |||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGCAAACTTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTG  443

seq1  AGAGTGGGGGG-----------------------AAGGGCATGGGGGACT  476
       ||||||| ||                        |||| ||||| ||||
seq2  GGAGTGGGTGGGTAGGAGAGTATGTGGGGGGGTTGAGGGTATGGGAGACT  493

seq1  TTTGGGATAGCATTGGA  493
      |||||||||||||| ||
seq2  TTTGGGATAGCATTTGA  510