BAC Information

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BAC

Clone NameB6Ng01-028N17
Chromosome7 (Build37)
Map Location 109,118,090 - 109,235,761
singlet/doubletdoublet
Overlap geneNuma1, Il18bp, Rnf121, Trpc2
Upstream geneP2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222
Downstream geneArt5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028N17.bB6Ng01-028N17.g
ACCDH859224DH859225
length9701,105
definitionDH859224|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N17, 5' end.DH859225|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,118,090 - 109,119,061)(109,234,637 - 109,235,761)
sequence
gaattcctttaactatcccaggaggtgtccagtgggtggcaacgctgtcg
agatcttgtctgagtgtgacatttcttttagtcatatagttgcagcagac
tctgaggatgatgagtccctgtgcctgttgagggctctagccagcgcctg
ccatactcagaactgtgccttggcccctcggcccctccccacaaatgccc
acaggaacagcggattaggttctggcagcacagctgggattttggcggcc
attccagtcaacaatagcgcagctatcgggacagaagagcgaggcctacg
ctccgcggctagaaactgcctgggccgctcgtttgggtggaggagtggga
ggagcaggcacacagcatggcatcttggccttgctacgcagaaggtaggg
gctgaagagattccctgcggagaacaggctagggtggccaagtcctaggg
cgggcaggcgggcgggcaggcagggcgctctgaggaggcctgcgctttgt
gtggcggggagccggcgggcggccgtgcgcctgcagacacgcccccctcg
ccgcgccgcaggaagctgcccctgtacaaggcctgcgccgtgcggctccc
ctgcgctcggctcccaggcttcctctgcgccgggcgcctttcccgccagg
ggctggccgtgggttcggcggctctgggcctgcccgatagggctggtctc
ggaggtggacaggccgtcactgctactgccttaagccctgctggaaagca
gcgaagggggagtgtcctggccatctcaggttggtgaggccggccaccgc
gggtgcgtttttgtgtgtttacgccacagcctccagcccttgctgcgcgt
gctctcccttcagcaatggagcctgcggggttgcgccctagccactctcc
cgcccccgcacgtcctgctcagttttagggcacgggcaagcttcatctgg
gttctcctggtaggcgtcgt
gaattctcagtgctccctgcctgcctcagtaggtatatgtaatagaagtc
tggacaaaggatcttgaggagggaaggggcatgcaatatgggtctcctgt
catgagtaccaggtcagtgaagatggcacacaggagagctttggtagcat
gctttgtgggtcaggctatctgtatggggttgagagtaaagagtcagggg
ctgtgggaggctggacagagatcctgtctttagcttgtctgttgggtaag
gcatctaatgagacagaaaagaaaaaaaatcaccaggcatttaactcctt
attatatagagtcaggtgttgtagtctaaaagcataagtctgggccaaag
ttattcattaggctagaggcaaagctaagcctgtgtgagacctgagtgtg
ggatcctggtggtgactagctttccaaggaccgttagtgctcagattgaa
ggtaaccaggagcggatgggaaaccgcccctcttgctgttaagggctcat
atggaaggtcagaatcaaggtctcagaattcccaaggatagaggaagtcc
cgagatatggctgactctggacatgccttagagaacacaggacaaatgac
cagggtaagggagggcaggcagtaggacccaaccgacctgtttctggttg
tagttgacagccaaccgcagtcttgccaggttggggatgccctcctcaaa
ggcctgacccaggccctcagcctcaggctcagtctcactatcctcaccca
ggtcattgagcactgcggtgacctcactctgatttcggcacatgcccagc
aactcgaagccatagtcctggcagagagactccagggcaatgtactgagg
ctgtaagaaagtgttgtgtgccatcagaccaacctgcccctgctcctgct
cctcccctttcccggaaccgtggccagggttagctctgacatcacgggtc
tatccattcccctgctactcatcggtctgtgtcacttcacttactgatgt
atccccaccgcatcactaagacacatacagccaacttacacgtttgctgc
tcccggattccccttctaacctgactcgtgtcccatacactccgactcta
tactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109118090_109119061
seq2: B6Ng01-028N17.b_47_1016

seq1  GAATTCCTTTAACTATCCCAGGAGGTGTCCAGTGGGTGGCAACGCTGTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAACTATCCCAGGAGGTGTCCAGTGGGTGGCAACGCTGTCG  50

seq1  AGATCTTGTCTGAGTGTGACATTTCTTTTAGTCATATAGTTGCAGCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGTCTGAGTGTGACATTTCTTTTAGTCATATAGTTGCAGCAGAC  100

seq1  TCTGAGGATGATGAGTCCCTGTGCCTGTTGAGGGCTCTAGCCAGCGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGATGATGAGTCCCTGTGCCTGTTGAGGGCTCTAGCCAGCGCCTG  150

seq1  CCATACTCAGAACTGTGCCTTGGCCCCTCGGCCCCTCCCCACAAATGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTCAGAACTGTGCCTTGGCCCCTCGGCCCCTCCCCACAAATGCCC  200

seq1  ACAGGAACAGCGGATTAGGTTCTGGCAGCACAGCTGGGATTTTGGCGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACAGCGGATTAGGTTCTGGCAGCACAGCTGGGATTTTGGCGGCC  250

seq1  ATTCCAGTCAACAATAGCGCAGCTATCGGGACAGAAGAGCGAGGCCTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTCAACAATAGCGCAGCTATCGGGACAGAAGAGCGAGGCCTACG  300

seq1  CTCCGCGGCTAGAAACTGCCTGGGCCGCTCGTTTGGGTGGAGGAGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCGGCTAGAAACTGCCTGGGCCGCTCGTTTGGGTGGAGGAGTGGGA  350

seq1  GGAGCAGGCACACAGCATGGCATCTTGGCCTTGCTACGCAGAAGGTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGCACACAGCATGGCATCTTGGCCTTGCTACGCAGAAGGTAGGG  400

seq1  GCTGAAGAGATTCCCTGCGGAGAACAGGCTAGGGTGGCCAAGTCCTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAGATTCCCTGCGGAGAACAGGCTAGGGTGGCCAAGTCCTAGGG  450

seq1  CGGGCAGGCGGGCGGGCAGGCAGGGCGCTCTGAGGAGGCCTGCGCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGGCGGGCGGGCAGGCAGGGCGCTCTGAGGAGGCCTGCGCTTTGT  500

seq1  GTGGCGGGGAGCCGGCGGGCGGCCGTGCGCCTGCAGACACGCCCCCCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGGGAGCCGGCGGGCGGCCGTGCGCCTGCAGACACGCCCCCCTCG  550

seq1  CCGCGCCGCAGGAAGCTGCCCCTGTACAAGGCCTGCGCCGTGCGGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCCGCAGGAAGCTGCCCCTGTACAAGGCCTGCGCCGTGCGGCTCCC  600

seq1  CTGCGCTCGGCTCCCAGGCTTCCTCTGCGCCGGGCGCCTTTCCCGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCTCGGCTCCCAGGCTTCCTCTGCGCCGGGCGCCTTTCCCGCCAGG  650

seq1  GGCTGGCCGTGGGTTCGGCGGCTCTGGGCCTGCCCGATAGGGCTGGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCGTGGGTTCGGCGGCTCTGGGCCTGCCCGATAGGGCTGGTCTC  700

seq1  GGAGGTGGACAGGCCGTCACTGCTACTGCCTTAAGCCCTGCTGGAAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGACAGGCCGTCACTGCTACTGCCTTAAGCCCTGCTGGAAAGCA  750

seq1  GCGAAGGGGGAGTGTCCTGGCCATCTCAGGTTGGTGAGGCCGGCCACCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGGGGGAGTGTCCTGGCCATCTCAGGTTGGTGAGGCCGGCCACCGC  800

seq1  GGGTGCGTTTTTGTGTGTTTACGCCACAGCCTCCAGCCCTTGCTGCGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGTTTTTGTGTGTTTACGCCACAGCCTCCAGCCCTTGCTGCGCGT  850

seq1  GCTCTCCCTTCAGCAATGGAGCCTGCGGGCTTGCGCCCTAGCCACTCTCC  900
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GCTCTCCCTTCAGCAATGGAGCCTGCGGGGTTGCGCCCTAGCCACTCT-C  899

seq1  CCGCCCCCGCACGTCCTGCTCAGTTTTTAGGGCACGGGCAGGCTTCACCT  950
      ||||||||||||||||||||||| |||||||||||||||| |||||| ||
seq2  CCGCCCCCGCACGTCCTGCTCAG-TTTTAGGGCACGGGCAAGCTTCATCT  948

seq1  GGGTCCTCCTGGTAGGCGTCGT  972
      |||| |||||||||||||||||
seq2  GGGTTCTCCTGGTAGGCGTCGT  970

seq1: chr7_109234637_109235761
seq2: B6Ng01-028N17.g_67_1171 (reverse)

seq1  AAGTATAGGAAGTCGGAGTTGTAGTGGGACAGGAGTCAGCGATTAGAAGA  50
      ||||||||  |||||||| |||| ||||||| ||||||  | ||||||| 
seq2  AAGTATAG--AGTCGGAG-TGTA-TGGGACACGAGTCA--GGTTAGAAG-  43

seq1  GGAAATCCGAGGAGCAGACAAACGTGTTAGGTTTGGGCTGTA-GTGTCTT  99
      || |||||| ||||||| ||||||||| ||   | ||||||| |||||||
seq2  GGGAATCCG-GGAGCAG-CAAACGTGTAAG---TTGGCTGTATGTGTCTT  88

seq1  AGTGATGCGGTGGGGATAACATCAGTTAAGTGAAGGTGACACAGGACCGA  149
      ||||||||||||||||| ||||||| |||||||| |||||||| ||||||
seq2  AGTGATGCGGTGGGGAT-ACATCAG-TAAGTGAA-GTGACACA-GACCGA  134

seq1  TGAGGTAGCAGGGGAATGGAATAGACCCGGTGATGTCAGAGCTAACCCTG  199
      ||| ||||||||||||||| |||||||| |||||||||||||||||||||
seq2  TGA-GTAGCAGGGGAATGG-ATAGACCC-GTGATGTCAGAGCTAACCCTG  181

seq1  GCCCACGGTTCCGGGAAAGGGGAGGAGCAGGAGCAGGGGCAGGTTGGTCT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CCACGGTTCCGGGAAAGGGGAGGAGCAGGAGCAGGGGCAGGTTGGTCT  230

seq1  GATGGCACACAACACTTTTCTTACAGCCTCAGTACATTGCCCTGGAGTCT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATGGCACACAACAC-TTTCTTACAGCCTCAGTACATTGCCCTGGAGTCT  279

seq1  CTCTGCCAGGACTATGGCTTCGAGTTGCTGGGCATGTGCCGAAATCAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGGACTATGGCTTCGAGTTGCTGGGCATGTGCCGAAATCAGAG  329

seq1  TGAGGTCACCGCAGTGCTCAATGACCTGGGTGAGGATAGTGAGACTGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCACCGCAGTGCTCAATGACCTGGGTGAGGATAGTGAGACTGAGC  379

seq1  CTGAGGCTGAGGGCCTGGGTCAGGCCTTTGAGGAGGGCATCCCCAACCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTGAGGGCCTGGGTCAGGCCTTTGAGGAGGGCATCCCCAACCTG  429

seq1  GCAAGACTGCGGTTGGCTGTCAACTACAACCAGAAACAGGTCGGTTGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACTGCGGTTGGCTGTCAACTACAACCAGAAACAGGTCGGTTGGGT  479

seq1  CCTACTGCCTGCCCTCCCTTACCCTGGTCATTTGTCCTGTGTTCTCTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCCTGCCCTCCCTTACCCTGGTCATTTGTCCTGTGTTCTCTAAG  529

seq1  GCATGTCCAGAGTCAGCCATATCTCGGGACTTCCTCTATCCTTGGGAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCAGAGTCAGCCATATCTCGGGACTTCCTCTATCCTTGGGAATT  579

seq1  CTGAGACCTTGATTCTGACCTTCCATATGAGCCCTTAACAGCAAGAGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCTTGATTCTGACCTTCCATATGAGCCCTTAACAGCAAGAGGGG  629

seq1  CGGTTTCCCATCCGCTCCTGGTTACCTTCAATCTGAGCACTAACGGTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCCCATCCGCTCCTGGTTACCTTCAATCTGAGCACTAACGGTCCT  679

seq1  TGGAAAGCTAGTCACCACCAGGATCCCACACTCAGGTCTCACACAGGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCTAGTCACCACCAGGATCCCACACTCAGGTCTCACACAGGCTT  729

seq1  AGCTTTGCCTCTAGCCTAATGAATAACTTTGGCCCAGACTTATGCTTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCCTCTAGCCTAATGAATAACTTTGGCCCAGACTTATGCTTTTA  779

seq1  GACTACAACACCTGACTCTATATAATAAGGAGTTAAATGCCTGGTGATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAACACCTGACTCTATATAATAAGGAGTTAAATGCCTGGTGATTT  829

seq1  TTTTTCTTTTCTGTCTCATTAGATGCCTTACCCAACAGACAAGCTAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTCTGTCTCATTAGATGCCTTACCCAACAGACAAGCTAAAGA  879

seq1  CAGGATCTCTGTCCAGCCTCCCACAGCCCCTGACTCTTTACTCTCAACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTCTGTCCAGCCTCCCACAGCCCCTGACTCTTTACTCTCAACCC  929

seq1  CATACAGATAGCCTGACCCACAAAGCATGCTACCAAAGCTCTCCTGTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATAGCCTGACCCACAAAGCATGCTACCAAAGCTCTCCTGTGTG  979

seq1  CCATCTTCACTGACCTGGTACTCATGACAGGAGACCCATATTGCATGCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCACTGACCTGGTACTCATGACAGGAGACCCATATTGCATGCCC  1029

seq1  CTTCCCTCCTCAAGATCCTTTGTCCAGACTTCTATTACATATACCTACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCTCAAGATCCTTTGTCCAGACTTCTATTACATATACCTACTG  1079

seq1  AGGCAGGCAGGGAGCACTGAGAATTC  1125
      ||||||||||||||||||||||||||
seq2  AGGCAGGCAGGGAGCACTGAGAATTC  1105