BAC Information

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BAC

Clone NameB6Ng01-029I03
Chromosome7 (Build37)
Map Location 26,339,566 - 26,483,296
singlet/doubletdoublet
Overlap geneLOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1
Upstream geneXrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2
Downstream geneCcdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029I03.bB6Ng01-029I03.g
ACCDH859691DH859692
length1,0981,082
definitionDH859691|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I03, 5' end.DH859692|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,339,566 - 26,340,462)(26,482,209 - 26,483,296)
sequence
gaattcaggacaaacaaggcatgatggaggagattcttggggaccccttc
tgtgggtacagttttatgtacctctctttttagtttatgttgggtatttg
tgatggtcagatgggcacactcaacaatgccctgtcccatggataacaag
gaattccagacttatgttcaatcccaaattccttacaaaattgtataaag
ttgtttccagtataagcagggccattatctgtcttgatgattttagacaa
tcccatagcagtaaaagcctgtaagcaatatcaattacatttctagaagc
ttctcctgtatgtagaagcaaaaatgagtcctggaacaagtgtcatatag
acatatatatatttcaagtttctaaattctgaaaaatgagttacctctat
ttgccaaatatgattgggcataaggcctcctggattaacctctaaatgag
gaacttgagacaatgtaagacagtcaggacattgctttaaaatcattcta
gcttgctccttagcgatcttatgtaggagccttaaggtatgactagaaag
atgaattttatagggaccacatttagacaaaacaataggatctgaaacta
aagcctcttttatcaaagctttgtcaatacaatcattgcctgcagctaaa
ggtctgggaagatcagaatgagctcttatatgaccaatataagtaggatt
ttttggagcaagaatggtgtttgtgccacaccacctccagtaggatctgt
gtgacaagttccacaaactgaggaaagtgacctcaaaaggtcctgtaggt
gtatgagtcgaattaaaaaccaacaaatataaaggcaaagaataatctat
ataagtaacaaattgttttcagtagctctttctacttgttgtaagccaac
acccttctgaagttaaaaaaaaatcgaggagaggtagaactctccctaag
atatcgaatcaggtttaattctcctgtagtagctttaataaggacaaagc
caagtaatatcagctaacagcttgaaatcatttaagtttaaaatggtcct
acatatatttctgagcaaacagctgatcgttaaattattttcaataat
gaattcaagacagtctgggctaaaggagtgaatctgaggccagcctggat
tacacagcaaagccctgtctcgaacaaaaccaaacaaaggagaactaaca
agatggctcagcaggcaaaggtgctcgcagccaggcccaatgacctgagt
cttatatctgggactcacatggtggaaggagaacggactcccaacagttg
tcctctgaccgtcacacagttttgtggcatggatgcccctacatacacac
agacacacacacacaatggccctacacacacacagagatataacttaaaa
acaatgaccaaaaagctttggcccttggtacgggcattctggatacacta
ggacgcccactctctgactctgagagatcttgtctcctcagagttcccta
tctcagtactatattccaacacttcacacttccaagcctacatacatctc
agaagttctatcttctcacctcctcagggtgcaccactgccagataaagc
gctggccctcaggaaactcactttctggctttctccacctccactctaga
tgctaacatctccctgccagccctgccattctgagacccaggatttgccg
ctctcatccaccagcactggagaccaccatctgccaagagtgtgggaacc
cagtgcagaccaccttctgattcggaacccaaatgtttggatcccagcac
tccagctttcctggggtcaacacgctccatggctcacagtaaattctttc
attagcatcccaaagtggcagaagcctggcaagaattttaaaacccaacc
agacaaccttccaacagacttccaactcttgttgaattccctgatcccag
cactccaggaagaaaacacccctcattctaggactctcagctgcccacag
aaccaggaacttgtccccaagccctgcagcatacatggtgcacaccagtc
cacagctgcagtcagcccgcagcctgcacagcttcgaaagaaacagtgtt
tactgaagcaatagttggtatccagggctctccggtgcctgagctgtcca
ggtgctgggctcttccaagggggggccatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_26339566_26340462
seq2: B6Ng01-029I03.b_269_1136

seq1  GTCTTGATGATTTTAGACAATCCCATAGCAGTAAAAGCCTGTAAGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGATGATTTTAGACAATCCCATAGCAGTAAAAGCCTGTAAGCAATA  50

seq1  TCAATTACATTTCTAGAAGCTTCTCCTGTATGTAGAAGCAAAAATGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACATTTCTAGAAGCTTCTCCTGTATGTAGAAGCAAAAATGAGTC  100

seq1  CTGGAACAAGTGTCATATAGACATATATATATTTCAAGTTTCTAAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAAGTGTCATATAGACATATATATATTTCAAGTTTCTAAATTCT  150

seq1  GAAAAATGAGTTACCTCTATTTGCCAAATATGATTGGGCATAAGGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAGTTACCTCTATTTGCCAAATATGATTGGGCATAAGGCCTCC  200

seq1  TGGATTAACCTCTAAATGAGGAACTTGAGACAATGTAAGACAGTCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAACCTCTAAATGAGGAACTTGAGACAATGTAAGACAGTCAGGAC  250

seq1  ATTGCTTTAAAATCATTCTAGCTTGCTCCTTAGCGATCTTATGTAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTAAAATCATTCTAGCTTGCTCCTTAGCGATCTTATGTAGGAGC  300

seq1  CTTAAGGTATGACTAGAAAGATGAATTTTATAGGGACCACATTTAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGTATGACTAGAAAGATGAATTTTATAGGGACCACATTTAGACAA  350

seq1  AACAATAGGATCTGAAACTAAAGCCTCTTTTATCAAAGCTTTGTCAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGGATCTGAAACTAAAGCCTCTTTTATCAAAGCTTTGTCAATAC  400

seq1  AATCATTGCCTGCAGCTAAAGGTCTGGGAAGATCAGAATGAGCTCTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGCCTGCAGCTAAAGGTCTGGGAAGATCAGAATGAGCTCTTATA  450

seq1  TGACCAATATAAGTAGGATTTTTTGGAGCAAGAATGGTGTTTGTGCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAATATAAGTAGGATTTTTTGGAGCAAGAATGGTGTTTGTGCCACA  500

seq1  CCACCTCCAGTAGGATCTGTGTGACAAGTTCCACAAACTGAGGAAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCAGTAGGATCTGTGTGACAAGTTCCACAAACTGAGGAAAGTGA  550

seq1  CCTCAAAAGGTCCTGTAGGTGTATGAGTCGAATTAAAAACCAACAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAAGGTCCTGTAGGTGTATGAGTCGAATTAAAAACCAACAAATAT  600

seq1  AAAGGCAAAGAATAATCTATATAAGTAACAAATTGTTTTCAGTAGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAAGAATAATCTATATAAGTAACAAATTGTTTTCAGTAGCTCTT  650

seq1  TCTACTTGTTGTAAGGCCAACAACCCTTCTGAAGTTAAAAAAAAAATCGA  700
      |||||||||||||| |||||| |||||||||||||| |||||||||||||
seq2  TCTACTTGTTGTAA-GCCAAC-ACCCTTCTGAAGTT-AAAAAAAAATCGA  697

seq1  GGAGAGGTAGGAACTCCCCCTAAGAATATCGAATCAGGGTTTTAATTCTC  750
      ||||||||| |||||| ||||||| |||||||||||||  ||||||||||
seq2  GGAGAGGTA-GAACTCTCCCTAAG-ATATCGAATCAGG--TTTAATTCTC  743

seq1  CTGTAGTAAGCTTTAAATAAGGACAAAGCCAAGTAATATCAGCTAACAGC  800
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CTGTAGT-AGCTTT-AATAAGGACAAAGCCAAGTAATATCAGCTAACAGC  791

seq1  TTTTGAAAATCATTTAAAGTTTTAAAATTGTCCCTACAAATAATTATTTT  850
      ||    |||||||||||   |||||||| || |||||| |||     |||
seq2  TT---GAAATCATTTAA--GTTTAAAATGGT-CCTACATATA-----TTT  830

seq1  CTGAGGAAAAACAGCTTGATCTGTTTAAAATTATTTTTCTAAATAAT  897
      |||||   ||||||| ||||| |||  |||||||||   | ||||||
seq2  CTGAG--CAAACAGC-TGATC-GTT--AAATTATTT---TCAATAAT  868

seq1: chr7_26482209_26483296
seq2: B6Ng01-029I03.g_68_1147 (reverse)

seq1  CTCATGGCCACCCCCCTGGAAAGGGCCCAGCACCTGCACAGCTCACGGCA  50
      ||||||||  ||||||| | ||| |||||||||||| |||||||| ||||
seq2  CTCATGGC--CCCCCCTTGGAAGAGCCCAGCACCTGGACAGCTCA-GGCA  47

seq1  CCGGAGAGCCCTGGATACCAACTATTGCTTCAGGTAAACACTGTCTCTCT  100
      |||||||||||||||||||||||||||||||| ||||||||||| ||| |
seq2  CCGGAGAGCCCTGGATACCAACTATTGCTTCA-GTAAACACTGTTTCT-T  95

seq1  CCGAGGCTGTGCAGGCTGCGGGCTGACTGCAGCCTGTGGACTGGTGTGCC  150
       ||| ||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TCGAAGCTGTGCAGGCTGCGGGCTGACTGCAG-CTGTGGACTGGTGTG-C  143

seq1  ACCATGTATGCCTGCAGGGCTTGGGGACAAGTTCCTGGTTCTGTGGGCAG  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTATG-CTGCAGGGCTTGGGGACAAGTTCCTGGTTCTGTGGGCAG  192

seq1  CTGAGAGTCCTAGAATGAGGGGTGTTTTCTTCCTGGAGTGCTGGGATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTCCTAGAATGAGGGGTGTTTTCTTCCTGGAGTGCTGGGATCAG  242

seq1  GGAATTCAACAAGAGTTGGAAGTCTGTTGGAAGGTTGTCTGGTTGGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAACAAGAGTTGGAAGTCTGTTGGAAGGTTGTCTGGTTGGGTTT  292

seq1  TAAAATTCTTGCCAGGCTTCTGCCACTTTGGGATGCTAATGAAAGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTTGCCAGGCTTCTGCCACTTTGGGATGCTAATGAAAGAATTT  342

seq1  ACTGTGAGCCATGGAGCGTGTTGACCCCAGGAAAGCTGGAGTGCTGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGCCATGGAGCGTGTTGACCCCAGGAAAGCTGGAGTGCTGGGAT  392

seq1  CCAAACATTTGGGTTCCGAATCAGAAGGTGGTCTGCACTGGGTTCCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATTTGGGTTCCGAATCAGAAGGTGGTCTGCACTGGGTTCCCACA  442

seq1  CTCTTGGCAGATGGTGGTCTCCAGTGCTGGTGGATGAGAGCGGCAAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCAGATGGTGGTCTCCAGTGCTGGTGGATGAGAGCGGCAAATCC  492

seq1  TGGGTCTCAGAATGGCAGGGCTGGCAGGGAGATGTTAGCATCTAGAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCAGAATGGCAGGGCTGGCAGGGAGATGTTAGCATCTAGAGTGG  542

seq1  AGGTGGAGAAAGCCAGAAAGTGAGTTTCCTGAGGGCCAGCGCTTTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGAAAGCCAGAAAGTGAGTTTCCTGAGGGCCAGCGCTTTATCTG  592

seq1  GCAGTGGTGCACCCTGAGGAGGTGAGAAGATAGAACTTCTGAGATGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGCACCCTGAGGAGGTGAGAAGATAGAACTTCTGAGATGTATG  642

seq1  TAGGCTTGGAAGTGTGAAGTGTTGGAATATAGTACTGAGATAGGGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGGAAGTGTGAAGTGTTGGAATATAGTACTGAGATAGGGAACTC  692

seq1  TGAGGAGACAAGATCTCTCAGAGTCAGAGAGTGGGCGTCCTAGTGTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACAAGATCTCTCAGAGTCAGAGAGTGGGCGTCCTAGTGTATCC  742

seq1  AGAATGCCCGTACCAAGGGCCAAAGCTTTTTGGTCATTGTTTTTAAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCCGTACCAAGGGCCAAAGCTTTTTGGTCATTGTTTTTAAGTTA  792

seq1  TATCTCTGTGTGTGTGTAGGGCCATTGTGTGTGTGTGTCTGTGTGTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGTGTGTGTGTAGGGCCATTGTGTGTGTGTGTCTGTGTGTATGT  842

seq1  AGGGGCATCCATGCCACAAAACTGTGTGACGGTCAGAGGACAACTGTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATCCATGCCACAAAACTGTGTGACGGTCAGAGGACAACTGTTGG  892

seq1  GAGTCCGTTCTCCTTCCACCATGTGAGTCCCAGATATAAGACTCAGGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCGTTCTCCTTCCACCATGTGAGTCCCAGATATAAGACTCAGGTCA  942

seq1  TTGGGCCTGGCTGCGAGCACCTTTGCCTGCTGAGCCATCTTGTTAGTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCTGGCTGCGAGCACCTTTGCCTGCTGAGCCATCTTGTTAGTTCT  992

seq1  CCTTTGTTTGGTTTTGTTCGAGACAGGGCTTTGCTGTGTAATCCAGGCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTGGTTTTGTTCGAGACAGGGCTTTGCTGTGTAATCCAGGCTG  1042

seq1  GCCTCAGATTCACTCCTTTAGCCCAGACTGTCTTGAAT  1088
      ||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGATTCACTCCTTTAGCCCAGACTGTCTTGAAT  1080