BAC Information

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BAC

Clone NameB6Ng01-030F13
Chromosome7 (Build37)
Map Location 86,739,133 - 86,834,684
singlet/doubletdoublet
Overlap geneRhcg, 5730590G19Rik
Upstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517
Downstream genePlin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F13.bB6Ng01-030F13.g
ACCDH860284DH860285
length1,067953
definitionDH860284|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F13, 5' end.DH860285|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,833,621 - 86,834,684)(86,739,133 - 86,740,085)
sequence
gaattctatctctaggacacacataatggaaggacagaaccaactctaaa
aactatcctcaacctccacatgcactgctatgcaagtgcgtgtgcttgca
tgtgtgcatgtgtgtgtacacatgtgtgcaggtgcccacagagaccagag
atcctggatcccctggaactagaattacaggctggtgtgaattactctac
atgggtgctgggtgtgaagaactgagctcagatcctctgtaacagactat
gctcttaatcatcctagaattttttttaatctttatttattattatatgt
tagtacactgtagctgtcttcagacacacgagaagaagacatcagatctc
attatagatggttgtgagccaccatgtggttgctgggatttgaacttggg
accttcagaagagcagtcagtgctcttaaccactgagccagctctccagc
cccttagaatgttttttactgtaggaagtatgttgacaatagtaaaatta
gcttaaaaatagaaggttctttttttgtccattattgcattaaaaaaaaa
aaaaggtacagctaagccttgcacagtcccagctgtaatgtttacatttc
tgccaaacaggtgcaatgtctgtcagcttgacaaggacttccaactcatc
acaattaccctgtgtgtaaaatctgtacatgtccaggtggatgggtgaca
gtatatagtacgtgtgttttttccccctatttgtactgagatgtggaaag
aaaggcaaagaaaggggacctgaagaagaaaggtcagtgagcaacctggg
ttttatcttttgctgcttatatcttagattgggtgctagggaagctgaca
ccacagacaccaaaaggttagaaaagaacagaaattaccctagtccaact
agtgacttcagaaaacaaccatagttgtacttctatcaaaggtaagctgg
atcttcagccttgcctggcataaaaagactcacctttttgtcaacaggag
atgcagacgatctattttaaaaaaacctgactattattaaagaagtgatt
gatgagcatttgcataa
gaattcaaacctagcctgggatatacgaggtcccgtctttcaaggggaca
gggatgattggtggtgatggcacccatctgtaatcccagcacttggctga
ggcagggggatacttaattccaggctagcctggggtatgaacaagaggta
aacaactaccttgcttcctggaagtttctcaaggtttggatatagatatt
acagcaccccatcaattattttgtgcattacagaggggaaggaggaggga
aggtctagcctgatctaaccaaataaagccaggtcatagatggggaaact
gaagctgacctctaggctgaagagactctccaagtcaagcagcggcagtt
acaaagccaagtgtgttcttgagtctctttctatatgttcctgcagtcta
gcctgcctagtccatctcaactcacaccttcatttcttcatgcctgctgt
ttgtctctttcctatggcatctggctttgagacctgggcctctgttgaga
aaagcagatccccatcccccacagatgagacttacctgcttctcacctgc
cctgggagtttagtgtaccaaggctgctgaaggtgctgaagttgctaagg
atactggaggtgtcggagggactggaggaactatggatgctgaagtagtt
ggaagtaccaagggcattgcaggtaccagagaagtagaatgtttgtgagc
aaggtcctcgggaatgtagacagtgtttcacctcttcatgaccctgtgga
gagagaaagctactcccagggtccaggatgcctagtggatgccagactag
ttgttggggcggaccaaaggctgcaaatgctgtgtgggcgagcgccacct
tgtgggcatctttgagactacatgggatgaatttcccttcactctaggtg
tgtcatgaattggcactggcccgggatgctgggcacacaagaccttgcca
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_86833621_86834684
seq2: B6Ng01-030F13.b_44_1096 (reverse)

seq1  ATCAATCCACTTCTTTTTATTATTAGTCAGTATTTTTTTAAATAGATCGT  50
      |||||| ||||||  |||| || |||||||  |||||| |||||||||||
seq2  ATCAAT-CACTTC--TTTAATAATAGTCAGGTTTTTTTAAAATAGATCGT  47

seq1  CTGCATTCTCCTGTTGACAGAAAAGGTGAGTCCTTTTTTATGCCAGGCAA  100
      ||||| ||||||||||||| ||||||||||||  ||||||||||||||||
seq2  CTGCA-TCTCCTGTTGACA-AAAAGGTGAGTC--TTTTTATGCCAGGCAA  93

seq1  GGCTGGAGATCCAGCTTACCTTTGATAGAGGTACAACTATGGTTTGTTTT  150
      ||||| ||||||||||||||||||||||| ||||||||||||||   |||
seq2  GGCTGAAGATCCAGCTTACCTTTGATAGAAGTACAACTATGGTT--GTTT  141

seq1  TCTGAAGTCACTAGTTGGACTAGGGTAATTTCTGTTCCTTTTCTTAACCT  200
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TCTGAAGTCACTAGTTGGACTAGGGTAATTTCTGTT-CTTTTC-TAACCT  189

seq1  TTTGGTGTCTGTGGTGTCAGCTTCCCTAGCACCCAATCTAAGATATAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCTGTGGTGTCAGCTTCCCTAGCACCCAATCTAAGATATAAGC  239

seq1  AGCAAAAGATAAAACCCAGGTTGCTCACTGACCTTTCTTCTTCAGGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGATAAAACCCAGGTTGCTCACTGACCTTTCTTCTTCAGGTCCC  289

seq1  CTTTCTTTGCCTTTCTTTCCACATCTCAGTACAAATAGGGGGAAAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGCCTTTCTTTCCACATCTCAGTACAAATAGGGGGAAAAAACA  339

seq1  CACGTACTATATACTGTCACCCATCCACCTGGACATGTACAGATTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACTATATACTGTCACCCATCCACCTGGACATGTACAGATTTTACA  389

seq1  CACAGGGTAATTGTGATGAGTTGGAAGTCCTTGTCAAGCTGACAGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTAATTGTGATGAGTTGGAAGTCCTTGTCAAGCTGACAGACATT  439

seq1  GCACCTGTTTGGCAGAAATGTAAACATTACAGCTGGGACTGTGCAAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTTTGGCAGAAATGTAAACATTACAGCTGGGACTGTGCAAGGCT  489

seq1  TAGCTGTACCTTTTTTTTTTTTTAATGCAATAATGGACAAAAAAAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTACCTTTTTTTTTTTTTAATGCAATAATGGACAAAAAAAGAACC  539

seq1  TTCTATTTTTAAGCTAATTTTACTATTGTCAACATACTTCCTACAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTTAAGCTAATTTTACTATTGTCAACATACTTCCTACAGTAAA  589

seq1  AAACATTCTAAGGGGCTGGAGAGCTGGCTCAGTGGTTAAGAGCACTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTAAGGGGCTGGAGAGCTGGCTCAGTGGTTAAGAGCACTGACT  639

seq1  GCTCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTCA  689

seq1  CAACCATCTATAATGAGATCTGATGTCTTCTTCTCGTGTGTCTGAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTATAATGAGATCTGATGTCTTCTTCTCGTGTGTCTGAAGACA  739

seq1  GCTACAGTGTACTAACATATAATAATAAATAAAGATTAAAAAAAATTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGTACTAACATATAATAATAAATAAAGATTAAAAAAAATTCTA  789

seq1  GGATGATTAAGAGCATAGTCTGTTACAGAGGATCTGAGCTCAGTTCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTAAGAGCATAGTCTGTTACAGAGGATCTGAGCTCAGTTCTTCA  839

seq1  CACCCAGCACCCATGTAGAGTAATTCACACCAGCCTGTAATTCTAGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCACCCATGTAGAGTAATTCACACCAGCCTGTAATTCTAGTTCC  889

seq1  AGGGGATCCAGGATCTCTGGTCTCTGTGGGCACCTGCACACATGTGTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATCCAGGATCTCTGGTCTCTGTGGGCACCTGCACACATGTGTACA  939

seq1  CACACATGCACACATGCAAGCACACGCACTTGCATAGCAGTGCATGTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCACACATGCAAGCACACGCACTTGCATAGCAGTGCATGTGGA  989

seq1  GGTTGAGGATAGTTTTTAGAGTTGGTTCTGTCCTTCCATTATGTGTGTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGGATAGTTTTTAGAGTTGGTTCTGTCCTTCCATTATGTGTGTCC  1039

seq1  TAGAGATAGAATTC  1064
      ||||||||||||||
seq2  TAGAGATAGAATTC  1053

seq1: chr7_86739133_86740085
seq2: B6Ng01-030F13.g_67_1019

seq1  GAATTCAAACCTAGCCTGGGATATACGAGGTCCCGTCTTTCAAGGGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTAGCCTGGGATATACGAGGTCCCGTCTTTCAAGGGGACA  50

seq1  GGGATGATTGGTGGTGATGGCACCCATCTGTAATCCCAGCACTTGGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATTGGTGGTGATGGCACCCATCTGTAATCCCAGCACTTGGCTGA  100

seq1  GGCAGGGGGATACTTAATTCCAGGCTAGCCTGGGGTATGAACAAGAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGGATACTTAATTCCAGGCTAGCCTGGGGTATGAACAAGAGGTA  150

seq1  AACAACTACCTTGCTTCCTGGAAGTTTCTCAAGGTTTGGATATAGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTACCTTGCTTCCTGGAAGTTTCTCAAGGTTTGGATATAGATATT  200

seq1  ACAGCACCCCATCAATTATTTTGTGCATTACAGAGGGGAAGGAGGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCCCATCAATTATTTTGTGCATTACAGAGGGGAAGGAGGAGGGA  250

seq1  AGGTCTAGCCTGATCTAACCAAATAAAGCCAGGTCATAGATGGGGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAGCCTGATCTAACCAAATAAAGCCAGGTCATAGATGGGGAAACT  300

seq1  GAAGCTGACCTCTAGGCTGAAGAGACTCTCCAAGTCAAGCAGCGGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGACCTCTAGGCTGAAGAGACTCTCCAAGTCAAGCAGCGGCAGTT  350

seq1  ACAAAGCCAAGTGTGTTCTTGAGTCTCTTTCTATATGTTCCTGCAGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCAAGTGTGTTCTTGAGTCTCTTTCTATATGTTCCTGCAGTCTA  400

seq1  GCCTGCCTAGTCCATCTCAACTCACACCTTCATTTCTTCATGCCTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTAGTCCATCTCAACTCACACCTTCATTTCTTCATGCCTGCTGT  450

seq1  TTGTCTCTTTCCTATGGCATCTGGCTTTGAGACCTGGGCCTCTGTTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTTCCTATGGCATCTGGCTTTGAGACCTGGGCCTCTGTTGAGA  500

seq1  AAAGCAGATCCCCATCCCCCACAGATGAGACTTACCTGCTTCTCACCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGATCCCCATCCCCCACAGATGAGACTTACCTGCTTCTCACCTGC  550

seq1  CCTGGGAGTTTAGTGTACCAAGGCTGCTGAAGGTGCTGAAGTTGCTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGTTTAGTGTACCAAGGCTGCTGAAGGTGCTGAAGTTGCTAAGG  600

seq1  ATACTGGAGGTGTCGGAGGGACTGGAGGAACTATGGATGCTGAAGTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGAGGTGTCGGAGGGACTGGAGGAACTATGGATGCTGAAGTAGTT  650

seq1  GGAAGTACCAAGGGCATTGCAGGTACCAGAGAAGTAGAATGTTTGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTACCAAGGGCATTGCAGGTACCAGAGAAGTAGAATGTTTGTGAGC  700

seq1  AAGGTCCTCGGGAATGTAGACAGTG-TTCACCTCTTCATGAACCTGTGGA  749
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  AAGGTCCTCGGGAATGTAGACAGTGTTTCACCTCTTCATGACCCTGTGGA  750

seq1  GAGAGAAAGCTACTCCCAGGGTCCAGGATGCCTAGTGGAATGCCAGACTA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGAGAAAGCTACTCCCAGGGTCCAGGATGCCTAGTGG-ATGCCAGACTA  799

seq1  G-TGTTGGGGCGGACCAAAGGCTGCAAATGCTGTGT-GGCGAGCGCCACC  847
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTGTTGGGGCGGACCAAAGGCTGCAAATGCTGTGTGGGCGAGCGCCACC  849

seq1  TTGTGGGCATCTTGAAGACTACATGGTATGAATTTCCCTTCACTCTTGGT  897
      |||||||||||||  ||||||||||| ||||||||||||||||||| |||
seq2  TTGTGGGCATCTTTGAGACTACATGGGATGAATTTCCCTTCACTCTAGGT  899

seq1  GCTGTCATG-ATTGGCACT-GCCCGGGATGCTGGGGCACAGCAAGAACCT  945
      | ||||||| ||||||||| |||||||||||| ||||||| |||| ||||
seq2  G-TGTCATGAATTGGCACTGGCCCGGGATGCT-GGGCACA-CAAG-ACCT  945

seq1  TGCCATAA  953
      ||||||||
seq2  TGCCATAA  953