BAC Information

Click to search

BAC

Clone NameB6Ng01-030F15
Chromosome7 (Build37)
Map Location 25,321,072 - 25,456,816
singlet/doubletdoublet
Overlap geneIrgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101
Upstream geneLOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428
Downstream geneGm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F15.bB6Ng01-030F15.g
ACCDH860288DH860289
length1,005979
definitionDH860288|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F15, 5' end.DH860289|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,321,072 - 25,322,092)(25,455,825 - 25,456,816)
sequence
gaattcaggttgtcataatcttgttacaaagagggagagaagcaagcacc
tggtgggagagcgaacggtagcagcagcttggccgctgtcactacatgaa
cgagggccatgtattttcacctggtcgatgaaaggactgggctagaccca
taagagcttctgagggctaatcagaagcctgcacagctgggctttgctcc
catctaaccctgaactctcacctctgacaccatccgccctacgaggaggc
accttattcgggcgttcatgcctgtaatccccgcacctccggttgacaca
ggagaatttgaaatttaaggcagtcttcggtgagagaggattgcaggcct
gtaagctatgcgcctgttcccactagagtctagacgggccttgaactcca
cacggtctggagccagcctgatactaagtccttgatgcttgggttggcca
gctttggccctgcctcagcctccccagtgccgggattatgactctaaacc
atcctagatcagcctgacactcttttcactaaatcatcagaaccaatgtg
ttcctacacccaagcacacctcatcacacaatacacctaattggaaatac
ttgaactgatcaatggagggcccaattcacatacccgtgtttcaattata
tcgataagttccccccaatcatggggttttgatcagtgcctcacatatta
aaggcaaacactctgctggaaccatgtacctagccctgtgctgggctgca
ggtagggttctgggcaggggctctaccactgagccacgcccccagcccct
cactgggggattctaggcagggctctacactgagccacgcccccagccct
cactgggggattctaggcagggctccaccactgagctacatcatatttca
gacaggtctcactaagttgcttgggctgtcttggactcactttattccag
acagcctggaattgggatctaccctcagcctccaagtactgggatcacag
cctgc
gaattctgggtctgagagaagatggttggggacctggaaagctggtgcca
ggactccaaggtctgagggaggaggctagtgtctggtttgtcaatggggt
ctgggagaggaggactgggggtctagacttctgtgtccgagggaggaagg
ttgggagtctggaactctggaacactaaataagatgggggaaagctggcc
cccggattcctgggtctgagagaggaggcatagcgatctggaattctgag
tttgaaaaaggaaagctggagcccaggctccaggatttgaggaaggcgga
ctggggtctgaattcattgttctgagggagaaaactggctaatcgtgtct
gaaggaagaggctaaggtctagtctggccaacagtcttgctaactgtgtc
aaagggaggaggctaaggtctggtcgggctaccgggtctgagggaggagg
caagggtctgtctattgagtctgagggtgaagggctgagtttgaggccct
cagcctgtattctgaggcagagggggctggtgtgggacccctatgtctaa
ggaagaagaacgagattctcttcttctgttaggagtgctgggttctgaac
ttttgctctgacggaggacctggaatctatatttcagtatcaaggagcag
agtttgcctagacttttgagtctgagggaataggctggctgcccagaatc
atgtgtccgttgggagggaagtagctggaactcaaactcctgagtcctag
gaggaagaggacagtgccctccaattccagttttggtggagctagactct
agggctaagatgctgaggcctgagagtttttgctgttaggtaagtcccta
agcttaaagcataagcccactctcctgtgtctacatgttgaagaaaaaca
gttgccaatagctattgttaacatgagctgcccggtcctaagctttgaaa
ctgagcaccgattaacccgtggccttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25321072_25322092
seq2: B6Ng01-030F15.b_45_1049

seq1  GAATTCAGGTTGTCATAATCTTGTTACAAAGAGGGAGAGAAGCAAGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGTCATAATCTTGTTACAAAGAGGGAGAGAAGCAAGCACC  50

seq1  TGGTGGGAGAGCGAACGGTAGCAGCAGCTTGGCCGCTGTCACTACATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAGAGCGAACGGTAGCAGCAGCTTGGCCGCTGTCACTACATGAA  100

seq1  CGAGGGCCATGTATTTTCACCTGGTCGATGAAAGGACTGGGCTAGACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGCCATGTATTTTCACCTGGTCGATGAAAGGACTGGGCTAGACCCA  150

seq1  TAAGAGCTTCTGAGGGCTAATCAGAAGCCTGCACAGCTGGGCTTTGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTTCTGAGGGCTAATCAGAAGCCTGCACAGCTGGGCTTTGCTCC  200

seq1  CATCTAACCCTGAACTCTCACCTCTGACACCATCCGCCCTACGAGGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACCCTGAACTCTCACCTCTGACACCATCCGCCCTACGAGGAGGC  250

seq1  ACCTTATTCGGGCGTTCATGCCTGTAATCCCCGCACCTCCGGTTGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTCGGGCGTTCATGCCTGTAATCCCCGCACCTCCGGTTGACACA  300

seq1  GGAGAATTTGAAATTTAAGGCAGTCTTCGGTGAGAGAGGATTGCAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTGAAATTTAAGGCAGTCTTCGGTGAGAGAGGATTGCAGGCCT  350

seq1  GTAAGCTATGCGCCTGTTCCCACTAGAGTCTAGACGGGCCTTGAACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTATGCGCCTGTTCCCACTAGAGTCTAGACGGGCCTTGAACTCCA  400

seq1  CACGGTCTGGAGCCAGCCTGATACTAAGTCCTTGATGCTTGGGTTGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTCTGGAGCCAGCCTGATACTAAGTCCTTGATGCTTGGGTTGGCCA  450

seq1  GCTTTGGCCCTGCCTCAGCCTCCCCAGTGCCGGGATTATGACTCTAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCCCTGCCTCAGCCTCCCCAGTGCCGGGATTATGACTCTAAACC  500

seq1  ATCCTAGATCAGCCTGACACTCTTTTCACTAAATCATCAGAACCAATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGATCAGCCTGACACTCTTTTCACTAAATCATCAGAACCAATGTG  550

seq1  TTCCTACACCCAAGCACACCTCATCACACAATACACCTAATTGGAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACACCCAAGCACACCTCATCACACAATACACCTAATTGGAAATAC  600

seq1  TTGAACTGATCAATGGAGGGCCCAATTCACATACCCGTGTTTCAATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGATCAATGGAGGGCCCAATTCACATACCCGTGTTTCAATTATA  650

seq1  TCGATAAGTTCCCCCCAATCATGGGGTTTTGATCAGTGCCTCACATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAAGTTCCCCCCAATCATGGGGTTTTGATCAGTGCCTCACATATTA  700

seq1  AAGGCAAACACTCTGCTGGAACCATGTACCTAGCCCTGTGCTGGGCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACACTCTGCTGGAACCATGTACCTAGCCCTGTGCTGGGCTGCA  750

seq1  GGTAGGGTTCTGGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTTCTGGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCT  800

seq1  CACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCC  850
      ||||||||||||||||||| |||||||| ||||||||||||||||||| |
seq2  CACTGGGGGATTCTAGGCA-GGGCTCTA-CACTGAGCCACGCCCCCAG-C  847

seq1  CCTCACTGGGGGATTCTAGGCAGGGGCTCCACCACTGAGCTACATCATAT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCACTGGGGGATTCTAGGCA-GGGCTCCACCACTGAGCTACATCATAT  896

seq1  TTCAAGACAAGGTCTCACTAAGTTGCTTGGGCTGTCCTTGAACTCACTTT  950
      ||| |||| |||||||||||||||||||||||||| |||| |||||||||
seq2  TTC-AGAC-AGGTCTCACTAAGTTGCTTGGGCTGT-CTTGGACTCACTTT  943

seq1  ATTCCAGACAGGCCTTGGAATTTGGGATCCTAACCCCTCAGCCTCCCAAG  1000
      |||||||||||  | ||||| ||||||| |||  |||||||||| |||||
seq2  ATTCCAGACAG--CCTGGAA-TTGGGAT-CTA--CCCTCAGCCT-CCAAG  986

seq1  TAACTGGGATCACAGGCCTGC  1021
      | |||||||||||| ||||||
seq2  T-ACTGGGATCACA-GCCTGC  1005

seq1: chr7_25455825_25456816
seq2: B6Ng01-030F15.g_65_1043 (reverse)

seq1  AGCAAGGCCACGGGTTTATCGTGCCTCAGTTTCCAAAGCTCTAAGACCCG  50
      |||||||||||||||| ||||   |||||||| ||||||| || || |||
seq2  AGCAAGGCCACGGGTTAATCGGTGCTCAGTTT-CAAAGCT-TAGGA-CCG  47

seq1  GCCAGCTCTAGTTAAACAATAGGCTTTTGGCAACTGTCTTTCTTCAACTT  100
      | ||||||  ||| ||||||| ||| ||||||||||| |||||||||| |
seq2  GGCAGCTCATGTT-AACAATA-GCTATTGGCAACTGTTTTTCTTCAACAT  95

seq1  GTAGACACAGGAGAGTGGGCCTTATGCTTTAAGCCTTAGGGACTTAACCT  150
      ||||||||||||||||||| ||||||||||||| ||||||||||||  | 
seq2  GTAGACACAGGAGAGTGGG-CTTATGCTTTAAG-CTTAGGGACTTA--CC  141

seq1  TAACAGCAAAAACCTCTCAAGGCCTCAGCATCTTAGCCCTTAGAGTCTAG  200
      |||||||||||| ||||| |||||||||||||||||||| ||||||||||
seq2  TAACAGCAAAAA-CTCTC-AGGCCTCAGCATCTTAGCCC-TAGAGTCTAG  188

seq1  CTCCACCAAAACTGGAATTTGGAGGGCACTGTCCTCTTCCTCCTAGGACT  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCCACCAAAACTGGAA-TTGGAGGGCACTGTCCTCTTCCTCCTAGGACT  237

seq1  CAGGAGTTTGAGTTCCAGCTACTTCCCTCCCAACGGACACATGATTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTGAGTTCCAGCTACTTCCCTCCCAACGGACACATGATTCTGG  287

seq1  GCAGCCAGCCTATTCCCTCAGACTCAAAAGTCTAGGCAAACTCTGCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGCCTATTCCCTCAGACTCAAAAGTCTAGGCAAACTCTGCTCCT  337

seq1  TGATACTGAAATATAGATTCCAGGTCCTCCGTCAGAGCAAAAGTTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGAAATATAGATTCCAGGTCCTCCGTCAGAGCAAAAGTTCAGAA  387

seq1  CCCAGCACTCCTAACAGAAGAAGAGAATCTCGTTCTTCTTCCTTAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCCTAACAGAAGAAGAGAATCTCGTTCTTCTTCCTTAGACAT  437

seq1  AGGGGTCCCACACCAGCCCCCTCTGCCTCAGAATACAGGCTGAGGGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCCCACACCAGCCCCCTCTGCCTCAGAATACAGGCTGAGGGCCTC  487

seq1  AAACTCAGCCCTTCACCCTCAGACTCAATAGACAGACCCTTGCCTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGCCCTTCACCCTCAGACTCAATAGACAGACCCTTGCCTCCTCC  537

seq1  CTCAGACCCGGTAGCCCGACCAGACCTTAGCCTCCTCCCTTTGACACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACCCGGTAGCCCGACCAGACCTTAGCCTCCTCCCTTTGACACAGT  587

seq1  TAGCAAGACTGTTGGCCAGACTAGACCTTAGCCTCTTCCTTCAGACACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGACTGTTGGCCAGACTAGACCTTAGCCTCTTCCTTCAGACACGA  637

seq1  TTAGCCAGTTTTCTCCCTCAGAACAATGAATTCAGACCCCAGTCCGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAGTTTTCTCCCTCAGAACAATGAATTCAGACCCCAGTCCGCCTT  687

seq1  CCTCAAATCCTGGAGCCTGGGCTCCAGCTTTCCTTTTTCAAACTCAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATCCTGGAGCCTGGGCTCCAGCTTTCCTTTTTCAAACTCAGAAT  737

seq1  TCCAGATCGCTATGCCTCCTCTCTCAGACCCAGGAATCCGGGGGCCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCGCTATGCCTCCTCTCTCAGACCCAGGAATCCGGGGGCCAGCT  787

seq1  TTCCCCCATCTTATTTAGTGTTCCAGAGTTCCAGACTCCCAACCTTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCATCTTATTTAGTGTTCCAGAGTTCCAGACTCCCAACCTTCCTC  837

seq1  CCTCGGACACAGAAGTCTAGACCCCCAGTCCTCCTCTCCCAGACCCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGACACAGAAGTCTAGACCCCCAGTCCTCCTCTCCCAGACCCCATT  887

seq1  GACAAACCAGACACTAGCCTCCTCCCTCAGACCTTGGAGTCCTGGCACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACCAGACACTAGCCTCCTCCCTCAGACCTTGGAGTCCTGGCACCA  937

seq1  GCTTTCCAGGTCCCCAACCATCTTCTCTCAGACCCAGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAGGTCCCCAACCATCTTCTCTCAGACCCAGAATTC  979