BAC Information

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BAC

Clone NameB6Ng01-030H13
Chromosome7 (Build37)
Map Location 85,471,838 - 85,472,955
singlet/doubletsinglet
Overlap geneNtrk3
Upstream geneA330068G13Rik
Downstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030H13.bB6Ng01-030H13.g
ACCDH860371DH860372
length1,2511,101
definitionDH860371|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H13, 5' end.DH860372|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaactggcttaatatttgcagatagccacaatggctttagttc
catgtgaagtgtctgtgtcactaacagaggtgatcattttatagcacgcc
tccccaaccctggctcttatattctttccacccttttccactatattgcc
taagccttgaatgggtggtttacaaagcacttcaggatgtttatgcattc
tgcgttagctactacccttcacagtcagaagaatgactgaccaaggatga
cagcaacccaaatctgtggatataaacacaaattagaaggtagcttgaca
agatgagcatttaacaaacatcaataggtcctcgcttatgacttttctag
ttatgggctttggccatgtttatagtatcaggaatgaattcccttcaggg
gagctgtcttcaaatccaatcaagggagtggctggttacccacatagata
gccttgccactgtgcacacatcacctggcaggcaatgttgaagtgtgcag
ggtccaccactggctaagaccattgatgtattttctccttcttcagcagc
aaccattcacactttcccccaccatgaaagctagctataagagtgagctc
ggtcagttcaagactgatttgtctatgtcctacaattgaagcttgttgta
tcttcagtgataggatctagttgtggtagccaaccaagaggcatggaaag
aacctgagggcttctggggcctctttcaccaaaaactggtagggaggtag
cctgtgcctgtcactgagattttcatttaattacccattaatccatgcct
tcctgagagaaactttgttcaccctgattggtgaacaaacttatcctttg
ttcaaatacatatatacacagattcttaaaagctagtcgggttccataag
cttcttatacacccttagctttggttaatcacccaacccttgcttctctc
cctctgcttccattttgcttgcactttatgctccccacctcatgatccat
atttacagcatgtgttctctccccctactattttttttactttgtcataa
gatcatattattatatttagtaactaccattcattcactgattaaccttg
acttctgcgctcacataggacgaaagataatgcttactgttctacccttg
cgtaaaccagctttaatgactctcaatcaaggacacattgcgcatttctc
cttgataccctaggcgtggcatctcgtctgctgttcatgaacttatacga
t
gaattcattattggcagcatccatggtagtagagagggactttatccctg
tgaaagatagtgttcttatcataatcaaaatcttaaggtgagatattttg
gatctttctctgttcctcaaattgttgatggactcaggatcacatagaaa
aataaaactagtttaaagtgtcaaaggacaacctgaagttcattcaaggg
tgaatagtggaggatcgtgttcaaagaagtctccaaagcaactgagacct
aaggaaatagtgactctgtgattacatatccgggtcccattctcacccca
atgactggggtggccatcaactacccagaaaacaggagaacttcactcca
gtcaacatccccatgtgccccaaaccaagacctgccatctggggaacact
tggggatgttgaatttcatgtttcttgtaggtttctgatcctggagtagg
aaaccaaggaaatggccaagtggctggaaagttccactgtcgacttcatc
tcaaaatacaaagaaacaattctaaagatggactcaaacccaaaatctgg
gaagctgcattttaacaacctagacggataagattcttttgaatcttgcc
tacgtcttacaaatcatatctaggtcctaaatcgccaatagcaaatgagc
aaatctaggcaagcctatgaagcctgggctatgccagaaccagggtatac
taacaaagaaaagcaaaaggtaggctctgtgccaggggagcaaggagtag
aacttggcaaataagctcaaaaagaccttcagtgggaccctaaattctca
tgtaacattcagcaaaaccttcaaaggccggagagactttaaatctatga
aaaactgcgcctaagcacacaactcctaggctctacctaacattacaaga
agctgtgattgaaaaagaaaaaaaaaaagatcaccactaccaccccccta
aatccattgtgttatctaactagttttcagtgacagtcaacactactatc
tcactagctttgagcagaaccgtgagcccacatagatgttcgaactactt
agattagatgcagattaattgagggcatggactgtctttaaactctgaag
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_85471838_85472955
seq2: B6Ng01-030H13.g_69_1169

seq1  GAATTCATTATTGGCAGCATCCATGGTAGTAGAGAGGGACTTTATCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTGGCAGCATCCATGGTAGTAGAGAGGGACTTTATCCCTG  50

seq1  TGAAAGATAGTGTTCTTATCATAATCAAAATCTTAAGGTGAGATATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATAGTGTTCTTATCATAATCAAAATCTTAAGGTGAGATATTTTG  100

seq1  GATCTTTCTCTGTTCCTCAAATTGTTGATGGACTCAGGATCACATAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCTCTGTTCCTCAAATTGTTGATGGACTCAGGATCACATAGAAA  150

seq1  AATAAAACTAGTTTAAAGTGTCAAAGGACAACCTGAAGTTCATTCAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTAGTTTAAAGTGTCAAAGGACAACCTGAAGTTCATTCAAGGG  200

seq1  TGAATAGTGGAGGATCGTGTTCAAAGAAGTCTCCAAAGCAACTGAGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTGGAGGATCGTGTTCAAAGAAGTCTCCAAAGCAACTGAGACCT  250

seq1  AAGGAAATAGTGACTCTGTGATTACATATCCGGGTCCCATTCTCACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAGTGACTCTGTGATTACATATCCGGGTCCCATTCTCACCCCA  300

seq1  ATGACTGGGGTGGCCATCAACTACCCAGAAAACAGGAGAACTTCACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGGGTGGCCATCAACTACCCAGAAAACAGGAGAACTTCACTCCA  350

seq1  GTCAACATCCCCATGTGCCCCAAACCAAGACCTGCCATCTGGGGAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACATCCCCATGTGCCCCAAACCAAGACCTGCCATCTGGGGAACACT  400

seq1  TGGGGATGTTGAATTTCATGTTTCTTGTAGGTTTCTGATCCTGGAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGTTGAATTTCATGTTTCTTGTAGGTTTCTGATCCTGGAGTAGG  450

seq1  AAACCAAGGAAATGGCCAAGTGGCTGGAAAGTTCCACTGTCGACTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGAAATGGCCAAGTGGCTGGAAAGTTCCACTGTCGACTTCATC  500

seq1  TCAAAATACAAAGAAACAATTCTAAAGATGGACTCAAACCCAAAATCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACAAAGAAACAATTCTAAAGATGGACTCAAACCCAAAATCTGG  550

seq1  GAAGCTGCATTTTAACAACCTAGACGGATAAGATTCTTTTGAATCTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGCATTTTAACAACCTAGACGGATAAGATTCTTTTGAATCTTGCC  600

seq1  TACGTCTTACAAATCATATCTAGGTCCTAAATCGCCAATAGCAAATGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCTTACAAATCATATCTAGGTCCTAAATCGCCAATAGCAAATGAGC  650

seq1  AAATCTAGGCAAGCCTATGAAGCCTGGGCTATGCCAGAACCAGGGTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGGCAAGCCTATGAAGCCTGGGCTATGCCAGAACCAGGGTATAC  700

seq1  TAACAAAGAAAAGCAAAAGGTAGGCTCTGTGCCAGGGGAGCAAGGAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGAAAAGCAAAAGGTAGGCTCTGTGCCAGGGGAGCAAGGAGTAG  750

seq1  AACTTGGCAAATAAGCTCAAAAAGACCTTCAGT-GGACCCTAAATTCTCA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACTTGGCAAATAAGCTCAAAAAGACCTTCAGTGGGACCCTAAATTCTCA  800

seq1  TGTAACATTCAGCAAAACCTTCAAAGGCCGGAGAGACTTTAAATCTATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATTCAGCAAAACCTTCAAAGGCCGGAGAGACTTTAAATCTATGA  850

seq1  AAAACTGCGCCTAAGCACACAACTCCTAGGCTCTACCTAACATTAACAAG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAACTGCGCCTAAGCACACAACTCCTAGGCTCTACCTAACATT-ACAAG  899

seq1  -AGCTGTGAATGGAAAAAGAAAAAAAAAAAAAGATCACCACTACCA-CCC  947
       ||||||| || |||||||  ||||||||||||||||||||||||| |||
seq2  AAGCTGTG-ATTGAAAAAG--AAAAAAAAAAAGATCACCACTACCACCCC  946

seq1  CCTAAATCCATTGTGTTATCTAACTAGTTATCCAGTGCACAGTCAACACT  997
      ||||||||||||||||||||||||||||| | ||||| ||||||||||||
seq2  CCTAAATCCATTGTGTTATCTAACTAGTT-TTCAGTG-ACAGTCAACACT  994

seq1  AACTA-CTCACTAGCTTTTGAAGCAGAAACAGGTGAGCACACATAGAATG  1046
       |||| ||||||||||||   ||||||| |  |||||| ||||||| |||
seq2  -ACTATCTCACTAGCTTT--GAGCAGAACC--GTGAGCCCACATAG-ATG  1038

seq1  TTCCAGATCTAACTTAGAATTAGATGCAGATAAATTGAGGGGCATGGAAG  1096
      |||  || || |||||| ||||||||||||| |||||| |||||||||  
seq2  TTC--GAACT-ACTTAG-ATTAGATGCAGATTAATTGA-GGGCATGGA--  1081

seq1  CTGTACTTTAAAGCTCTGAAGC  1118
      |||| ||||||| |||||||||
seq2  CTGT-CTTTAAA-CTCTGAAGC  1101