BAC Information

Click to search

BAC

Clone NameB6Ng01-031C08
Chromosome2 (Build37)7 (Build37)
Map Location 142,776,687 - 142,777,698104,247,167 - 104,248,240
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031C08.bB6Ng01-031C08.g
ACCDH860843DH860844
length8911,049
definitionDH860843|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C08, 5' end.DH860844|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,687 - 142,777,698)(104,247,167 - 104,248,240)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctacaccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttatttcttcttcagggacttgaagtttt
gaattcagtctctataacctataggatagaaagaactgactttcacatgt
gaaatgccctctgaacactacatgcatgatgaggattgcacacagtcctc
tacagacaaacaaaaccaaataaatttttgagacaaaaatctcactatgt
attgctcctgcaggtgatcctgagtgatgggattagaggtgtttgacata
atagcctgctataatttttttcaattcttttgcgatagggtctcactatg
tagccttgcctgacctggaactcactatatagaccagactggtcttgaac
tcacaggggtacatctgcctctttctcctgagtgttgggattaaagatgt
acagcactatacccagctacaaaaaaaatttaaatataaacattgattta
gttttatcctgcgtgaggaataggacttgggatatatattgttcaaaggt
tcatatgactttgcctaccttttgactaaaaacttttatggatagaaaaa
aaatggagatacaaatgtcatggtgttctggaaatgaatctttttatgag
accacctaagatagctgtttaaattggacttgactaatagaaatcactgt
tttcagcttgctattatagacactaatgtgtaagatgttttacaactgct
ttttaaaacaagaaggaagatatttggtatttccttgtttgtatgaactt
ctgtctctaagttttctattaactggagttgtgcttgttgagatttatgc
catagagtatagtttttgtttggtgtatgtgttgttatgtaaaatgtaca
tctaaatgcttactttgaactgtttgaatttgtgtgataaaacatacaaa
ggatttataccatctgaaaacacaacacaagtatagttaacaatacctga
aatgcctatttgttgttacatgaaagtacacattggttgacatgtgaggg
ataaagtattatatgaagtcaactaacaggtaacagtggggactttaggc
ttcgaatggaagaagggcaactctgaagttttacttcttccccttatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776687_142777698
seq2: B6Ng01-031C08.b_50_601 (reverse)

seq1  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG  50

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACA  100
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  TCACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACA  100

seq1  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150

seq1  ATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200

seq1  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAAC  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAC  300

seq1  AGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  350

seq1  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  400
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAA  400

seq1  AAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  450

seq1  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAG  500

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGG  550
      |||||||||||||||| ||||||||||||||||| ||            |
seq2  AAAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAA----------CTG  540

seq1  AAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATC  600
      || |||||    |||                                   
seq2  AACAAAGA----ATTC----------------------------------  552

seq1  ATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCA  650
                                                        
seq2  --------------------------------------------------  552

seq1  AATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTT  700
                                                        
seq2  --------------------------------------------------  552

seq1  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAA  750
                                                        
seq2  --------------------------------------------------  552

seq1  ATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACA  800
                                                        
seq2  --------------------------------------------------  552

seq1  AATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTC  850
                                                        
seq2  --------------------------------------------------  552

seq1  TATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCC  900
                                                        
seq2  --------------------------------------------------  552

seq1  TAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGG  950
                                                        
seq2  --------------------------------------------------  552

seq1  TGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTG  1000
                                                        
seq2  --------------------------------------------------  552

seq1  AACAAAGAATTC  1012
                  
seq2  ------------  552

seq1: chr7_104247167_104248240
seq2: B6Ng01-031C08.g_69_1117

seq1  GAATTCAGTCTCTATAACCTATAGGATAGAAAGAACTGACTTTCACATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTATAACCTATAGGATAGAAAGAACTGACTTTCACATGT  50

seq1  GAAATGCCCTCTGAACACTACATGCATGATGAGGATTGCACACAGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCCTCTGAACACTACATGCATGATGAGGATTGCACACAGTCCTC  100

seq1  TACAGACAAACAAAACCAAATAAATTTTTGAGACAAAAATCTCACTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAAACAAAACCAAATAAATTTTTGAGACAAAAATCTCACTATGT  150

seq1  ATTGCTCCTGCAGGTGATCCTGAGTGATGGGATTAGAGGTGTTTGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCTGCAGGTGATCCTGAGTGATGGGATTAGAGGTGTTTGACATA  200

seq1  ATAGCCTGCTATAATTTTTTTCAATTCTTTTGCGATAGGGTCTCACTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGCTATAATTTTTTTCAATTCTTTTGCGATAGGGTCTCACTATG  250

seq1  TAGCCTTGCCTGACCTGGAACTCACTATATAGACCAGACTGGTCTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGCCTGACCTGGAACTCACTATATAGACCAGACTGGTCTTGAAC  300

seq1  TCACAGGGGTACATCTGCCTCTTTCTCCTGAGTGTTGGGATTAAAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGGTACATCTGCCTCTTTCTCCTGAGTGTTGGGATTAAAGATGT  350

seq1  ACAGCACTATACCCAGCTACAAAAAAAATTTAAATATAAACATTGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTATACCCAGCTACAAAAAAAATTTAAATATAAACATTGATTTA  400

seq1  GTTTTATCCTGCGTGAGGAATAGGACTTGGGATATATATTGTTCAAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCCTGCGTGAGGAATAGGACTTGGGATATATATTGTTCAAAGGT  450

seq1  TCATATGACTTTGCCTACCTTTTGACTAAAAACTTTTATGGATAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGACTTTGCCTACCTTTTGACTAAAAACTTTTATGGATAGAAAAA  500

seq1  AAATGGAGATACAAATGTCATGGTGTTCTGGAAATGAATCTTTTTATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGATACAAATGTCATGGTGTTCTGGAAATGAATCTTTTTATGAG  550

seq1  ACCACCTAAGATAGCTGTTTAAATTGGACTTGACTAATAGAAATCACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTAAGATAGCTGTTTAAATTGGACTTGACTAATAGAAATCACTGT  600

seq1  TTTCAGCTTGCTATTATAGACACTAATGTGTAAGATGTTTTACAACTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTGCTATTATAGACACTAATGTGTAAGATGTTTTACAACTGCT  650

seq1  TTTTAAAACAAGAAGGAAGATATTTGGTATTTCCTTGTTTGTATGAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACAAGAAGGAAGATATTTGGTATTTCCTTGTTTGTATGAACTT  700

seq1  CTGTCTCTAAGTTTTCTATTAACTGGAGTTGTGCTTGTTGAGATTTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTAAGTTTTCTATTAACTGGAGTTGTGCTTGTTGAGATTTATGC  750

seq1  CATAGAGTATAGTTTTTGTTTGGTGTATGTGTTGTTAATGTAAAATGTAC  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATAGAGTATAGTTTTTGTTTGGTGTATGTGTTGTT-ATGTAAAATGTAC  799

seq1  ATCTAAAATGCTTACTTTGAACTG-TTGAATTTGTGTGATAAAACATACA  849
      |||| ||||||||||||||||||| |||||||||||||||||||||||| 
seq2  ATCT-AAATGCTTACTTTGAACTGTTTGAATTTGTGTGATAAAACATAC-  847

seq1  AAAGGATTTATACCATCCTGAAAAACAACAACACAAGTATTAGTTAACAA  899
      |||||||||||||||| |||||||   |||||||||||| |||||||| |
seq2  AAAGGATTTATACCAT-CTGAAAA--CACAACACAAGTA-TAGTTAAC-A  892

seq1  ATACCTGAAATGCCTATTTGTTGTTACATGAAAGTAACAACATTGGGTTG  949
      ||||||||||||||||||||||||||||||||||||   ||||| |||||
seq2  ATACCTGAAATGCCTATTTGTTGTTACATGAAAGTA--CACATT-GGTTG  939

seq1  ACATTGTGAGGGATAAAAGTATTATAATTGAAAGTCAAACTAAACAGGTA  999
      ||| |||||||||| |||||||||||  || ||||| |||| ||||||||
seq2  ACA-TGTGAGGGAT-AAAGTATTATA--TG-AAGTC-AACT-AACAGGTA  982

seq1  ACAGTGGTGACTGTAAGGCTTTGGAAGGGAGAGATGGCCAAACTCTGAAG  1049
      ||||||| |||| | |||||| | | || ||| | |||  ||||||||||
seq2  ACAGTGGGGACT-TTAGGCTTCGAATGGAAGA-AGGGC--AACTCTGAAG  1028

seq1  TTTTAGCTTTCTTTCCCCTTTATGT  1074
      |||||   |||||  ||| ||||||
seq2  TTTTA--CTTCTT--CCCCTTATGT  1049