BAC Information

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BAC

Clone NameB6Ng01-031K18
ChromosomeX (Build37)7 (Build37)
Map Location 93,420,720 - 93,420,89689,719,906 - 89,720,912
singlet/doubletsingletsinglet
Overlap geneLOC668221
Upstream geneLOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l, Msn, Psmb7-ps1
Downstream geneVsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236, LOC668238, Pgr15l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031K18.bB6Ng01-031K18.g
ACCDH861219DH861220
length1,070994
definitionDH861219|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K18, 5' end.DH861220|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,420,720 - 93,420,896)(89,719,906 - 89,720,912)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgctgggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccat
ggagagctagagaagtacccagagctaaaggatctcaccctattagtgga
cacatatgactatcagtacccggagctctgactctagctgcatatgtatc
aagatggctagtcggcatca
gaattcatagtccctcatcactaccgacagtgatggattgaaggacaaag
tgagcacagtaggggaccaataaataaacagatactggctatttactcat
cacaatgctcttgttgatacccccagacattctcatttatggggtgcact
taaggcatcatggttttacgaagctctttagctcactaaaaagctcaact
agcttgaggacagccatcctggagtaccactggttaaaccaacatgggag
aaaagggtgctcttggcccagtttcttctattcagtgacagttgatgagc
tgctactagttaggcaggaaggggataaaaaagagcatcatattgtctgt
gagcatcctgctcaagtcactgccacagtcacgtcttttcctaagatggt
ggaggaagcacttctatctggtcttaccatcatgaaccattatatataag
tcatacttgtgtgtaagcaggtttctcagaaacatggccaatggatagct
ttgaaactcagtcttctagaataattctgagttctaacactggaattcat
gtaatgatccaaagtacagagaagattttttataggacagtagagtcctc
tccataaagagtgaatattgcctagtatggctacagaactgctcaaggga
aaccatctagttgaatgcttcaggttggggacaatacagggatgatgtga
ggcccacctagtattttgattcctgggactcaatgactcaacatggacat
ggacataccaatggccttcaagatgtcccttattgcaatcttggagttga
gagcacctgattcctaaggcaggccatgaagcctgcatatggtaggcagg
ctcagctttgggtagacactgacacatgaccaatgaagcatgaacctgca
tgttcctctggttgtgtgacatttatagagcgctatggtcacactttccc
tttcagcctgctttgcagtgctcacacgtgggtagatagcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_93420720_93420896
seq2: B6Ng01-031K18.b_932_1113 (reverse)

seq1  TGATGGCCGACTAGGCTATCTTCTGATACATATGCAGCTAGAGACACAAG  50
      |||| |||||||| || ||||  |||||||||||||||||||| ||  ||
seq2  TGAT-GCCGACTA-GCCATCT--TGATACATATGCAGCTAGAGTCA-GAG  45

seq1  CTCTGGGGCTACTGATTAGTTCATATTGCTGT-TCTACCTATAGGGTTGC  99
      ||| |||  |||||| ||| |||||    ||| || ||  |||||||   
seq2  CTCCGGG--TACTGA-TAG-TCATA----TGTGTCCACTAATAGGGT--G  85

seq1  AGACCCCTTCAGCTCCTTGGGTAATTTCTCTAGCTC--------------  135
      |||  |||| |||||  ||||| | |||||||||||              
seq2  AGA-TCCTTTAGCTC--TGGGT-ACTTCTCTAGCTCTCCATGGGAGCCCT  131

seq1  ---------CCAATAGCTGACTGTGAGCATCCACTTCTGTATTTGCCAGG  176
               ||| ||||||||||||||||||||||||||| ||||| |||
seq2  GTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  181

seq1  C  177
      |
seq2  C  182

seq1: chr7_89719906_89720912
seq2: B6Ng01-031K18.g_66_1059 (reverse)

seq1  AACTGCTATCTACCCACGGTGTGAGCAACTGCCAAAGCAGGGCTGGAAAG  50
      ||||||||||||||||| |||||||| |||| ||||||| |||| |||||
seq2  AACTGCTATCTACCCAC-GTGTGAGC-ACTG-CAAAGCA-GGCT-GAAAG  45

seq1  GGGAAAAGTGTGACCATAGCGCTTCTATAAATGGTCACACAACCAGAGGA  100
      ||  |||||||||||||||||| ||||||||| |||||||||||||||||
seq2  GG--AAAGTGTGACCATAGCGC-TCTATAAAT-GTCACACAACCAGAGGA  91

seq1  ACATGCAGGTTTCATGCTTCATTGGTCATGTGTCAGGTGTTCTACCCAAA  150
      ||||||||| ||||||||||||||||||||||||| ||| ||||||||||
seq2  ACATGCAGG-TTCATGCTTCATTGGTCATGTGTCA-GTG-TCTACCCAAA  138

seq1  GCTGAGCCCTGCCTACCATATGCAGGCTTCATGGCCTGCCTTAGGAATCA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAG-CCTGCCTACCATATGCAGGCTTCATGGCCTGCCTTAGGAATCA  187

seq1  GGTGCTCTCAACTCCAAGATTGCAATAAGGGACATCTTGAAGGCCATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTCAACTCCAAGATTGCAATAAGGGACATCTTGAAGGCCATTGG  237

seq1  TATGTCCATGTCCATGTTGAGTCATTGAGTCCCAGGAATCAAAATACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCATGTCCATGTTGAGTCATTGAGTCCCAGGAATCAAAATACTAG  287

seq1  GTGGGCCTCACATCATCCCTGTATTGTCCCCAACCTGAAGCATTCAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCTCACATCATCCCTGTATTGTCCCCAACCTGAAGCATTCAACTA  337

seq1  GATGGTTTCCCTTGAGCAGTTCTGTAGCCATACTAGGCAATATTCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCCCTTGAGCAGTTCTGTAGCCATACTAGGCAATATTCACTCT  387

seq1  TTATGGAGAGGACTCTACTGTCCTATAAAAAATCTTCTCTGTACTTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGAGGACTCTACTGTCCTATAAAAAATCTTCTCTGTACTTTGGA  437

seq1  TCATTACATGAATTCCAGTGTTAGAACTCAGAATTATTCTAGAAGACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACATGAATTCCAGTGTTAGAACTCAGAATTATTCTAGAAGACTGA  487

seq1  GTTTCAAAGCTATCCATTGGCCATGTTTCTGAGAAACCTGCTTACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAGCTATCCATTGGCCATGTTTCTGAGAAACCTGCTTACACACA  537

seq1  AGTATGACTTATATATAATGGTTCATGATGGTAAGACCAGATAGAAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGACTTATATATAATGGTTCATGATGGTAAGACCAGATAGAAGTGC  587

seq1  TTCCTCCACCATCTTAGGAAAAGACGTGACTGTGGCAGTGACTTGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCACCATCTTAGGAAAAGACGTGACTGTGGCAGTGACTTGAGCAG  637

seq1  GATGCTCACAGACAATATGATGCTCTTTTTTATCCCCTTCCTGCCTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCACAGACAATATGATGCTCTTTTTTATCCCCTTCCTGCCTAACT  687

seq1  AGTAGCAGCTCATCAACTGTCACTGAATAGAAGAAACTGGGCCAAGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGCTCATCAACTGTCACTGAATAGAAGAAACTGGGCCAAGAGCA  737

seq1  CCCTTTTCTCCCATGTTGGTTTAACCAGTGGTACTCCAGGATGGCTGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCTCCCATGTTGGTTTAACCAGTGGTACTCCAGGATGGCTGTCC  787

seq1  TCAAGCTAGTTGAGCTTTTTAGTGAGCTAAAGAGCTTCGTAAAACCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTAGTTGAGCTTTTTAGTGAGCTAAAGAGCTTCGTAAAACCATGA  837

seq1  TGCCTTAAGTGCACCCCATAAATGAGAATGTCTGGGGGTATCAACAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAGTGCACCCCATAAATGAGAATGTCTGGGGGTATCAACAAGAG  887

seq1  CATTGTGATGAGTAAATAGCCAGTATCTGTTTATTTATTGGTCCCCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGATGAGTAAATAGCCAGTATCTGTTTATTTATTGGTCCCCTACT  937

seq1  GTGCTCACTTTGTCCTTCAATCCATCACTGTCGGTAGTGATGAGGGACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACTTTGTCCTTCAATCCATCACTGTCGGTAGTGATGAGGGACTA  987

seq1  TGAATTC  1007
      |||||||
seq2  TGAATTC  994