BAC Information

Click to search

BAC

Clone NameB6Ng01-033J17
Chromosome7 (Build37)
Map Location 89,856,534 - 90,013,890
singlet/doubletdoublet
Overlap geneEftud1, LOC100038986, LOC619808
Upstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
Downstream geneRkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033J17.bB6Ng01-033J17.g
ACCDH862606DH862607
length887949
definitionDH862606|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J17, 5' end.DH862607|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,856,534 - 89,857,417)(90,012,940 - 90,013,890)
sequence
gaattcagtttgacattatcttaaggattttaaagataagttttacagga
aagtataaatctattaaggtttttctttctttggttttgttttcgttttt
aatgttttctgagatagaggtatttccttggcaccttgacgctagcttgt
agaaaggagacttttgaatgatcaccagaaggatgagttttgagtggtga
cagtttttataaaaactttacacagcttaatctttcagaaagtcagagtg
tgtggcttagaggaactggatgttagatgaagaagcatgattcaattatg
atctaaaacctgaagatatatggccaacaagtagatatggagcaactcag
aagtgcattttaaaatcataatagagtgctcctttataatcatcagaagg
gtaaaactattgcaatctggtaaccccttgtgttgtatttgtggaactgt
ggatatgctttgaaggatacatgatacccagatactgcaattttaactca
aaagagaaggtttagtagactcttaaacaaagaacgcacacaagaatgtt
aatagtgctcatgttcatgagagaacggcaaattaaatgcttaccaatgc
aaattatattgttatgaaatggaatgttgtgcatgagtaaaaatgaatga
tgttagattatcaatttttggacagtcttgcaactgaatagaaaacatgc
agtttgcagaatttctatgtaaaagttaaaagcatgtaaatactgcagat
tatttagaagcaggtgtccaaggttttttgtttttttggtttttaaaaaa
aaaaaaaaagcaaattcaaggtaattaacttacaaaagatggaactgcca
tggaatgctggtaatggcctgcagctttgggccagtg
gaattcctgcttatgaactcggagtcaaattggtttgtgaatgaggaagg
agtgcacttgaggaccctaaactaggtactggagcaaaagcgccctgcct
agaaagagtaatgaaagagcattcatgacggcaagaagcaaaagagagcc
tggccgcgaggcccctgcctgtcatctgagagggtgagggagggcaggga
tttcaaccaattccaggacagcctgggctatatagtgagttttggaccag
tctgggttacaacgtgatatcctgatttttaaacgttaacaaaagaggca
gttctgaaaagcccgttttcaccttgcaagcacaacatgttagcttcctt
ttggggtccactgctgttcctttaaaacgaacacgaaactgattgtgtac
gtgtaactgggatggagggtccctcaggaaacttgctgcagggagcttgc
ccatagattttttgcaagcctgccataactctattccccctggaacctgc
ttgtaataagatttcagatgagttgctcctgaaaatttggaggatttggc
tcttcaggaagtccctggggaccctgtctcattagcaggaaggtgaatgc
aatgcttcaccaaggtgacatgtttaatgtcactcttccctgctggatga
aagcaggaacggcacctgcttataactatgaaaggtggatgaaatcacac
attttgccccacatgaaagaaaggtggaaactctgaccttagcaattcat
gaccatctagacagggtccaggtaggtccagacaaagagccttgtttggt
gaaagctgtgaaaatcagtgttctgaagacactgtattgatacatccctg
agagcgttgcacgatgattggtgtgctagaaatatgtctgacaacgccgg
acttcatttccagcttgactttttgtgtctgtgccacttgaaaggccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89856534_89857417
seq2: B6Ng01-033J17.b_46_932

seq1  GAATTCAGTTTGACATTATCTTAAGGATTTTAAAGATAAGTTTTACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGACATTATCTTAAGGATTTTAAAGATAAGTTTTACAGGA  50

seq1  AAGTATAAATCTATTAAGGTTTTTCTTTCTTTGGTTTTGTTTTCGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAATCTATTAAGGTTTTTCTTTCTTTGGTTTTGTTTTCGTTTTT  100

seq1  AATGTTTTCTGAGATAGAGGTATTTCCTTGGCACCTTGACGCTAGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTGAGATAGAGGTATTTCCTTGGCACCTTGACGCTAGCTTGT  150

seq1  AGAAAGGAGACTTTTGAATGATCACCAGAAGGATGAGTTTTGAGTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGACTTTTGAATGATCACCAGAAGGATGAGTTTTGAGTGGTGA  200

seq1  CAGTTTTTATAAAAACTTTACACAGCTTAATCTTTCAGAAAGTCAGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTATAAAAACTTTACACAGCTTAATCTTTCAGAAAGTCAGAGTG  250

seq1  TGTGGCTTAGAGGAACTGGATGTTAGATGAAGAAGCATGATTCAATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTAGAGGAACTGGATGTTAGATGAAGAAGCATGATTCAATTATG  300

seq1  ATCTAAAACCTGAAGATATATGGCCAACAAGTAGATATGGAGCAACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAACCTGAAGATATATGGCCAACAAGTAGATATGGAGCAACTCAG  350

seq1  AAGTGCATTTTAAAATCATAATAGAGTGCTCCTTTATAATCATCAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATTTTAAAATCATAATAGAGTGCTCCTTTATAATCATCAGAAGG  400

seq1  GTAAAACTATTGCAATCTGGTAACCCCTTGTGTTGTATTTGTGGAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTATTGCAATCTGGTAACCCCTTGTGTTGTATTTGTGGAACTGT  450

seq1  GGATATGCTTTGAAGGATACATGATACCCAGATACTGCAATTTTAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGCTTTGAAGGATACATGATACCCAGATACTGCAATTTTAACTCA  500

seq1  AAAGAGAAGGTTTAGTAGACTCTTAAACAAAGAACGCACACAAGAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGGTTTAGTAGACTCTTAAACAAAGAACGCACACAAGAATGTT  550

seq1  AATAGTGCTCATGTTCATGAGAGAACGGCAAATTAAATGCTTACCAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGCTCATGTTCATGAGAGAACGGCAAATTAAATGCTTACCAATGC  600

seq1  AAATTATATTGTTATGAAATGGAATGTTGTGCATGAGTAAAAATGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTGTTATGAAATGGAATGTTGTGCATGAGTAAAAATGAATGA  650

seq1  TGTTAGATTATCAA-TTTTGGACAGTCTTGCAACTGAATAGAAAACATGC  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTAGATTATCAATTTTTGGACAGTCTTGCAACTGAATAGAAAACATGC  700

seq1  AGTTTGCAGAATTTCTATGTAAAAGTTAAAAGCATGTAAATACTGCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAGAATTTCTATGTAAAAGTTAAAAGCATGTAAATACTGCAGAT  750

seq1  TATTTAGAAGCAGGTGTCCAAGGTTTTTTGTTTTTTTGGTTTTTAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAAGCAGGTGTCCAAGGTTTTTTGTTTTTTTGGTTTTTAAAAAA  800

seq1  AAAAAAAAAGCAAATTCAAGGTAATTAACTTACAAAAGATGGAACTGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCAAATTCAAGGTAATTAACTTACAAAAGATGGAACTGCCA  850

seq1  TGG-ATGCTGGTAATGGCCTGCAGCTTTGGG-CAGTG  884
      ||| ||||||||||||||||||||||||||| |||||
seq2  TGGAATGCTGGTAATGGCCTGCAGCTTTGGGCCAGTG  887

seq1: chr7_90012940_90013890
seq2: B6Ng01-033J17.g_68_1015 (reverse)

seq1  TGGCCTTTTCATAGTCGGCACAGACACAAAAAGTCCAGCTGGAAATGGAG  50
      ||||| ||||| ||| ||||||||||||||||||| ||||||||||| ||
seq2  TGGCC-TTTCA-AGT-GGCACAGACACAAAAAGTCAAGCTGGAAATGAAG  47

seq1  TCTGGCGTTGTCAGACATAATTTCTAGCACATCAATCATCGTGCAACGCT  100
      || ||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TCCGGCGTTGTCAGACAT-ATTTCTAGCACACCAATCATCGTGCAACGCT  96

seq1  CTCAGGGATGTATTCAATACAGTGTCTTCAGAACACTGATTTTCACAGCT  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATGTA-TCAATACAGTGTCTTCAGAACACTGATTTTCACAGCT  145

seq1  TTCACCAAAC-AGGCTCTTTGTCTGGACCTACCTGGA-CCTGTCTAGATG  198
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TTCACCAAACAAGGCTCTTTGTCTGGACCTACCTGGACCCTGTCTAGATG  195

seq1  GTCATGAATTGCTAAGGTCAGAGTTTCCACCTTTCTTTCATGTGGGGCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAATTGCTAAGGTCAGAGTTTCCACCTTTCTTTCATGTGGGGCAA  245

seq1  AATGTGTGATTTCATCCACCTTTCATAGTTATAAGCAGGTGCCGTTCCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGATTTCATCCACCTTTCATAGTTATAAGCAGGTGCCGTTCCTG  295

seq1  CTTTCATCCAGCAGGGAAGAGTGACATTAAACATGTCACCTTGGTGAAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCCAGCAGGGAAGAGTGACATTAAACATGTCACCTTGGTGAAGC  345

seq1  ATTGCATTCACCTTCCTGCTAATGAGACAGGGTCCCCAGGGACTTCCTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTCACCTTCCTGCTAATGAGACAGGGTCCCCAGGGACTTCCTGA  395

seq1  AGAGCCAAATCCTCCAAATTTTCAGGAGCAACTCATCTGAAATCTTATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAATCCTCCAAATTTTCAGGAGCAACTCATCTGAAATCTTATTA  445

seq1  CAAGCAGGTTCCAGGGGGAATAGAGTTATGGCAGGCTTGCAAAAAATCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGTTCCAGGGGGAATAGAGTTATGGCAGGCTTGCAAAAAATCTA  495

seq1  TGGGCAAGCTCCCTGCAGCAAGTTTCCTGAGGGACCCTCCATCCCAGTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGCTCCCTGCAGCAAGTTTCCTGAGGGACCCTCCATCCCAGTTA  545

seq1  CACGTACACAATCAGTTTCGTGTTCGTTTTAAAGGAACAGCAGTGGACCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACACAATCAGTTTCGTGTTCGTTTTAAAGGAACAGCAGTGGACCC  595

seq1  CAAAAGGAAGCTAACATGTTGTGCTTGCAAGGTGAAAACGGGCTTTTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAGCTAACATGTTGTGCTTGCAAGGTGAAAACGGGCTTTTCAG  645

seq1  AACTGCCTCTTTTGTTAACGTTTAAAAATCAGGATATCACGTTGTAACCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTCTTTTGTTAACGTTTAAAAATCAGGATATCACGTTGTAACCC  695

seq1  AGACTGGTCCAAAACTCACTATATAGCCCAGGCTGTCCTGGAATTGGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTCCAAAACTCACTATATAGCCCAGGCTGTCCTGGAATTGGTTG  745

seq1  AAATCCCTGCCCTCCCTCACCCTCTCAGATGACAGGCAGGGGCCTCGCGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTGCCCTCCCTCACCCTCTCAGATGACAGGCAGGGGCCTCGCGG  795

seq1  CCAGGCTCTCTTTTGCTTCTTGCCGTCATGAATGCTCTTTCATTACTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCTCTTTTGCTTCTTGCCGTCATGAATGCTCTTTCATTACTCTT  845

seq1  TCTAGGCAGGGCGCTTTTGCTCCAGTACCTAGTTTAGGGTCCTCAAGTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAGGGCGCTTTTGCTCCAGTACCTAGTTTAGGGTCCTCAAGTGC  895

seq1  ACTCCTTCCTCATTCACAAACCAATTTGACTCCGAGTTCATAAGCAGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCTCATTCACAAACCAATTTGACTCCGAGTTCATAAGCAGGAA  945

seq1  TTC  951
      |||
seq2  TTC  948