BAC Information

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BAC

Clone NameB6Ng01-033J19
Chromosome7 (Build37)
Map Location 10,512,955 - 10,619,936
singlet/doubletdoublet
Overlap geneEG625580, LOC100042163, LOC625605
Upstream geneLOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911
Downstream geneEG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033J19.bB6Ng01-033J19.g
ACCDH862610DH862611
length885568
definitionDH862610|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J19, 5' end.DH862611|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,512,955 - 10,513,837)(10,619,374 - 10,619,936)
sequence
gaattcctaaatatttgttcagaaatatgatttttccctgatcttttggg
tagaatttctctctggtcgcattaaaatgatataaatcttgggtacaaaa
atacatccaagcatccctgcactggatgccaagatggagaagatctccac
agcaaccatgtgtttgcccttagtgctatggtagacagggaggaaggtga
cccagacactacagaatactagcatgctgaaggtcaagaacttggcttca
ttgaatgtgtcaggcagattcttggccaagaaagccacagagaagcttcc
aagtgccaggcaggccaaatatcccaggatacagtagaatgcagtatctg
agcccttgttgcacacaatgatgatgtggccatggagagtgtgttcatca
atatcaacaaagggaggagaaactgctagccagattgcacacagaacaca
ttggagtagggaacatatgggaataatgtagttgggtgtccctgatacca
ggaagtatctcaatcttcttcctgggtctgtgactttgaaagccagaacc
acaatgactgttttggccagaactgtggaaacagctacagtgaatacaat
tccaaatgtgatttgctgtaagacacagatgactctgtttggaaggccaa
tgaagaaaaaggagcacagaaaacagaacatgagtgacatgagtaataga
tagctgaggcttctgttattggccttcacaataggagtgtcatggtgctt
cacaaagacacaaagtaccacagctgtgaatgcagagaagcagaaggcca
ttaaagcaagtgccatccccaaagtgtcttcatagcttaggaaggtgaca
cctttcttaaatacattttgttctgttccgtgttg
ttgactgaggaataccaaatggatgaaaagcacataaaagaatgttcaac
atccttaatcaccagggaaatgcaaatcaaaacaaccctgagattcaacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgctagcagatgc
tggcaaggatgtggtaaaagaggaacactcctccattgctgatgggatta
cgagctggtacaaccactctggaaatcagtctggtagttcctcagaaaat
tgtcagaaatagtactaccggaggatccatcaatccctcccctgtgcata
tatccagaagacattccaacttgtaatatggacacatgctccactgtgtt
catagcagccttatttataatagccagaaaatggaaagaacctggatgac
cctcaatagaggaatggatacagaaaatttattctaataactgatctcct
ctaaaataacatttattctaaattccaatcttgaattttaataacattta
cttattctcttttacatttaagtatatgcccctgtatattttctagtcac
cttgtaagtgtaggatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10512955_10513837
seq2: B6Ng01-033J19.b_48_932

seq1  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50

seq1  TAGAATTTCTCTCTGGTCGCATTAAAATGATATAAATCTTGGGTACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTCTCTCTGGTCGCATTAAAATGATATAAATCTTGGGTACAAAA  100

seq1  ATACATCCAAGCATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCAAGCATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150

seq1  AGCAACCATGTGTTTGCCCTTAGTGCTATGGTAGACAGGGAGGAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCATGTGTTTGCCCTTAGTGCTATGGTAGACAGGGAGGAAGGTGA  200

seq1  CCCAGACACTACAGAATACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACTACAGAATACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250

seq1  TTGAATGTGTCAGGCAGATTCTTGGCCAAGAAAGCCACAGAGAAGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTGTCAGGCAGATTCTTGGCCAAGAAAGCCACAGAGAAGCTTCC  300

seq1  AAGTGCCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTATCTG  350

seq1  AGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCA  400

seq1  ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACA  450

seq1  TTGGAGTAGGGAACATATGGGAATAATGTAGTTGGGTGTCCCTGATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGGGAACATATGGGAATAATGTAGTTGGGTGTCCCTGATACCA  500

seq1  GGAAGTATCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCCAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCCAGAACC  550

seq1  ACAATGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTGAATACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTGAATACAAT  600

seq1  TCCAAATGTGATTTGCTGTAAGACACAGATGACTCTGTTTGGAAGGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTGATTTGCTGTAAGACACAGATGACTCTGTTTGGAAGGCCAA  650

seq1  TGAAGAAAAAGGAGCACAGAAAACAGAACATGAGTGACATGAGTAATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAGAAAAAGGAGCACAGAAAACAGAACATGAGTGACATGAGTAATAGA  700

seq1  TAGCTGAGGCTTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGCTTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTGCTT  750

seq1  CACAAAGACACAAAGTACCAGAGCTGTGAATGCAGAGAAACAGAAGGCCA  800
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  CACAAAGACACAAAGTACCACAGCTGTGAATGCAGAGAAGCAGAAGGCCA  800

seq1  TTAAGGCAAGTGCCATTCCCAAGGGGTCTTCATAGCTTAGAAAGGTGACA  850
      |||| ||||||||||| ||||| | ||||||||||||||| |||||||||
seq2  TTAAAGCAAGTGCCATCCCCAAAGTGTCTTCATAGCTTAGGAAGGTGACA  850

seq1  CCTTTC-TGAATACA-TTTGTTCTGTTCAGTGTTG  883
      |||||| | |||||| |||||||||||| ||||||
seq2  CCTTTCTTAAATACATTTTGTTCTGTTCCGTGTTG  885

seq1: chr7_10619374_10619936
seq2: B6Ng01-033J19.g_79_641 (reverse)

seq1  GGATCCTACACTTACAAGGTGACTAGAAAATATACAGGGGCATATACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTACACTTACAAGGTGACTAGAAAATATACAGGGGCATATACTTA  50

seq1  AATGTAAAAGAGAATAAGTAAATGTTATTAAAATTCAAGATTGGAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAGAGAATAAGTAAATGTTATTAAAATTCAAGATTGGAATTTA  100

seq1  GAATAAATGTTATTTTAGAGGAGATCAGTTATTAGAATAAATTTTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATGTTATTTTAGAGGAGATCAGTTATTAGAATAAATTTTCTGTA  150

seq1  TCCATTCCTCTATTGAGGGTCATCCAGGTTCTTTCCATTTTCTGGCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCTCTATTGAGGGTCATCCAGGTTCTTTCCATTTTCTGGCTATT  200

seq1  ATAAATAAGGCTGCTATGAACACAGTGGAGCATGTGTCCATATTACAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACACAGTGGAGCATGTGTCCATATTACAAGT  250

seq1  TGGAATGTCTTCTGGATATATGCACAGGGGAGGGATTGATGGATCCTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTCTTCTGGATATATGCACAGGGGAGGGATTGATGGATCCTCCG  300

seq1  GTAGTACTATTTCTGACAATTTTCTGAGGAACTACCAGACTGATTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACTATTTCTGACAATTTTCTGAGGAACTACCAGACTGATTTCCAG  350

seq1  AGTGGTTGTACCAGCTCGTAATCCCATCAGCAATGGAGGAGTGTTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGTACCAGCTCGTAATCCCATCAGCAATGGAGGAGTGTTCCTCT  400

seq1  TTTACCACATCCTTGCCAGCATCTGCTAGCACCTGAATTTTTGATCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACATCCTTGCCAGCATCTGCTAGCACCTGAATTTTTGATCTTAG  450

seq1  CCATTCTGACTGGTGTGAGGTTGAATCTCAGGGTTGTTTTGATTTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGACTGGTGTGAGGTTGAATCTCAGGGTTGTTTTGATTTGCATT  500

seq1  TCCCTGGTGATTAAGGATGTTGAACATTCTTTTATGTGCTTTTCATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTGATTAAGGATGTTGAACATTCTTTTATGTGCTTTTCATCCAT  550

seq1  TTGGTATTCCTCA  563
      |||||||||||||
seq2  TTGGTATTCCTCA  563