BAC Information

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BAC

Clone NameB6Ng01-034C04
Chromosome7 (Build37)
Map Location 52,600,616 - 52,735,138
singlet/doubletdoublet
Overlap gene2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh
Upstream geneShank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc
Downstream geneNucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034C04.bB6Ng01-034C04.g
ACCDH862982DH862983
length8151,107
definitionDH862982|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C04, 5' end.DH862983|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,600,616 - 52,601,448)(52,734,032 - 52,735,138)
sequence
gaattctccaggagctagggcctccactctccaggtctgcgacaagaggc
tcacaataggttccaggccagcctgggtgagtctcaaaggaagaccttat
ttcaataacattttgggagaactgcatatggatagacgagcagatgaaat
gaacaataatagcaacactgtgtgagccaagattgtggaggcccaaagga
ggaaaagacgtctgctaagggcatttcaagggatgacctttcttgtcttg
tccttaaattacactcaagaacccaagagaagaaaggcagtgggggtgca
tgcctttctcagcactcgggaggcagaggcatgtggatctctgtgaattc
aaggccagcttgatctgtagaacaagttccaggacagagagaaaaacaaa
acaaaaccaaaccaagcaaacaaacaaacaaaaagaacccaagaggcaaa
caggcagctacatgggacagaggatttacaataaaatttaggcatatcta
tgtggaattctcttctctgtctttttagtacccaagtcaagattgaaacc
tccaggggccggagaagtggctcagtggttaaagacactgactgctcttt
caaaggcctgggttcaatttccagcaacactggtggctcccaacctctgt
actgggatcctgagccctcctcctgtgggtggctgaagacagtgacatgt
actcccatactaaaattagatatttttttaaaattgaactccacccaact
tgctaagccagggctatttagcactgaccactcttaggttaaatgttaaa
caatcttgcttattt
gaattcagataccatacaattactcctttgaagtacataattagttcagg
gcattgtggctcaggagttaccccagcctttgggagactgaggtagggaa
gataccaggagttcagagccagtatgggctacacagtgaggccctgttca
gagcaggccaggtgagatggctcagcgggtcaaaggaatctaccaccgaa
gccccataatcagagtctggcccccagaattcaggaaaagagggaaaaag
agaattttttggagttttttgacttctacacatgtgctgtgacacatgtc
cctctgcatgtacaacatacacatatacacactaacaataaattagaaac
ttaaaagccaacactattcagccaagcatggtggtgtctgcctgtaatcc
caggcctggggaaatgagagaagaggatcgggagataattgtctaacaca
caggaagcttgggatgtgcgctcctggagattctgtctccaacaaataga
acccagcaacaccaacaaaaaagaaacagcagcacgcaggccatgtgtca
cgcaggccatgtgtccgggccggtgttggaggactgtgcagtctgaccca
ggtctcaacccctctgacttgtgccttctttccaggtgtggatgacactg
tcagcgtgctacttcagtatccaggaggggttcatggcagcttcacctgc
agcatctcctccaacctccccaacacagcgtatgtgagtggtaccaaggg
catggcccaggtgagacatcacaagccggagcgctggggaccctgtgcag
ccgccatcagagggtgtgcctagagctgcaataacctcttctttaccacg
cttctgagacactcactctcattaacaaccaagccaggagatgggggttg
ggtcttggaagccacagtcccatatcctcagtcttaggacaaaaccgttc
ttctgatgtatgggtttgggtctaggaatggaagcctagtctttctgagt
gccaaacaattgctctctgcctccaggtactctccagctccaggttcctt
tctagctggtaggtggccacttccgctatcctgcccccaatacccaccca
aagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52600616_52601448
seq2: B6Ng01-034C04.b_44_858

seq1  GAATTCTCCAGGAGCTAGGGCCTCCACTCTCCAGGTCTGCGACAAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGAGCTAGGGCCTCCACTCTCCAGGTCTGCGACAAGAGGC  50

seq1  TCACAATAGGTTCCAGGCCAGCCTGGGTGAGTCTCAAAGGAAGACCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAGGTTCCAGGCCAGCCTGGGTGAGTCTCAAAGGAAGACCTTAT  100

seq1  TTCAATAACATTTTGGGAGAACTGCATATGGATAGACGAGCAGATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAACATTTTGGGAGAACTGCATATGGATAGACGAGCAGATGAAAT  150

seq1  GAACAATAATAGCAACACTGTGTGAGCCAAGATTGTGGAGGCCCAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAATAGCAACACTGTGTGAGCCAAGATTGTGGAGGCCCAAAGGA  200

seq1  GGAAAAGACGTCTGCTAAGGGCATTTCAAGGGATGACCTTTCTTGTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGACGTCTGCTAAGGGCATTTCAAGGGATGACCTTTCTTGTCTTG  250

seq1  TCCTTAAATTACACTCAAGAACCCAAGAGAAGAAAGGCAGTGGGGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAATTACACTCAAGAACCCAAGAGAAGAAAGGCAGTGGGGGTGCA  300

seq1  TGCCTTTCTCAGCACTCGGGAGGCAGAGGCATGTGGATCTCTGTGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCTCAGCACTCGGGAGGCAGAGGCATGTGGATCTCTGTGAATTC  350

seq1  AAGGCCAGCTTGATCTGTAGAACAAGTTCCAGGACAGAGAGAAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCTTGATCTGTAGAACAAGTTCCAGGACAGAGAGAAAAACAAA  400

seq1  ACAAAACCAAACCAAGCAAACAAACAAACAAAAAGAACCCAAGAGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAAACCAAGCAAACAAACAAACAAAAAGAACCCAAGAGGCAAA  450

seq1  CAGGCAGCTACATGGGACAGAGGATTTACAATAAAA-TTAGGCATATCTA  499
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGGCAGCTACATGGGACAGAGGATTTACAATAAAATTTAGGCATATCTA  500

seq1  TGTGGAATTCTCTTCTCTGTCTTTTTAGTACCCAAGTCAAGATTG-AACC  548
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGGAATTCTCTTCTCTGTCTTTTTAGTACCCAAGTCAAGATTGAAACC  550

seq1  TCCA-GGGCCGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTT  597
      |||| ||||||||||  |||||||||||||||   |||||||||||||||
seq2  TCCAGGGGCCGGAGAAGTGGCTCAGTGGTTAAAGACACTGACTGCTCTTT  600

seq1  CAGAGGTCCTGTGTTCAATTTCCAGCAACCACATGGTGGCTCACAACCAT  647
      || ||| |||| |||||||||||||||| ||| ||||||||| ||||| |
seq2  CAAAGG-CCTGGGTTCAATTTCCAGCAA-CAC-TGGTGGCTCCCAACC-T  646

seq1  CTGTACTGGGATTCTGATGCCCT-CTCCTGGTGTGTGTCTGAAGACAGTG  696
      |||||||||||| |||| ||||| ||||| ||| ||| ||||||||||||
seq2  CTGTACTGGGATCCTGA-GCCCTCCTCCT-GTGGGTGGCTGAAGACAGTG  694

seq1  ACAGTGTACTCACATACATAAAATATAGAATATTTTTTTAAAAATTGAAC  746
      ||| ||||||| ||||| |||||| ||| |||||||||| ||||||||| 
seq2  ACA-TGTACTCCCATAC-TAAAAT-TAG-ATATTTTTTT-AAAATTGAA-  738

seq1  CTCCAACCCAAGCTTGCTAAGCCAGTGCTATATATAGCACTGAGCACTCT  796
      |||| |||||| ||||||||||||| ||  ||| ||||||||| ||||||
seq2  CTCC-ACCCAA-CTTGCTAAGCCAGGGC--TATTTAGCACTGACCACTCT  784

seq1  TCAGGTTATAAATGTTTAAACGAATCTTTGCTTATTT  833
      | ||||  |||||| |||||| |||| ||||||||||
seq2  T-AGGT--TAAATG-TTAAAC-AATC-TTGCTTATTT  815

seq1: chr7_52734032_52735138
seq2: B6Ng01-034C04.g_68_1174 (reverse)

seq1  TTCCCTTCGGTTGGGTATTTGGTGGCAGGAATAGCGGAAGTAG-CACCTA  49
      ||||||| || |||||| |||| |||||| ||||||||||| | ||||||
seq2  TTCCCTTTGGGTGGGTA-TTGGGGGCAGG-ATAGCGGAAGTGGCCACCTA  48

seq1  -CAGCTAGAAA-GAACCTGAGGCTGGAGAGTACCTGGATGGC--AGAGCA  95
       |||||||||| |||||||  ||||||||||||||||| |||  ||||||
seq2  CCAGCTAGAAAGGAACCTGGAGCTGGAGAGTACCTGGA-GGCAGAGAGCA  97

seq1  TATGTTTAGCACTCAGAAAGACTAGGCTTCCATTCCTAGACCCAAAACCC  145
        ||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGTTTGGCACTCAGAAAGACTAGGCTTCCATTCCTAGACCC-AAACCC  146

seq1  ATACATCAGAAGAACGGTTTTGTCCTAAGACCTGAGGATATGGGACTGTG  195
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATACATCAGAAGAACGGTTTTGTCCTAAGA-CTGAGGATATGGGACTGTG  195

seq1  GCTTCCAAGACCCAACCCCCATCTCCTGGCTTGGTTGTTAATGAGAGTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAAGACCCAACCCCCATCTCCTGGCTTGGTTGTTAATGAGAGTGA  245

seq1  GTGTCTCAGAAGCGTGGTAAAGAAGAGGTTATTGCAGCTCTAGGCACACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAGAAGCGTGGTAAAGAAGAGGTTATTGCAGCTCTAGGCACACC  295

seq1  CTCTGATGGCGGCTGCACAGGGTCCCCAGCGCTCCGGCTTGTGATGTCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGGCGGCTGCACAGGGTCCCCAGCGCTCCGGCTTGTGATGTCTC  345

seq1  ACCTGGGCCATGCCCTTGGTACCACTCACATACGCTGTGTTGGGGAGGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCCATGCCCTTGGTACCACTCACATACGCTGTGTTGGGGAGGTT  395

seq1  GGAGGAGATGCTGCAGGTGAAGCTGCCATGAACCCCTCCTGGATACTGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGATGCTGCAGGTGAAGCTGCCATGAACCCCTCCTGGATACTGAA  445

seq1  GTAGCACGCTGACAGTGTCATCCACACCTGGAAAGAAGGCACAAGTCAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACGCTGACAGTGTCATCCACACCTGGAAAGAAGGCACAAGTCAGA  495

seq1  GGGGTTGAGACCTGGGTCAGACTGCACAGTCCTCCAACACCGGCCCGGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGAGACCTGGGTCAGACTGCACAGTCCTCCAACACCGGCCCGGAC  545

seq1  ACATGGCCTGCGTGACACATGGCCTGCGTGCTGCTGTTTCTTTTTTGTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCTGCGTGACACATGGCCTGCGTGCTGCTGTTTCTTTTTTGTTG  595

seq1  GTGTTGCTGGGTTCTATTTGTTGGAGACAGAATCTCCAGGAGCGCACATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTGGGTTCTATTTGTTGGAGACAGAATCTCCAGGAGCGCACATC  645

seq1  CCAAGCTTCCTGTGTGTTAGACAATTATCTCCCGATCCTCTTCTCTCATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTCCTGTGTGTTAGACAATTATCTCCCGATCCTCTTCTCTCATT  695

seq1  TCCCCAGGCCTGGGATTACAGGCAGACACCACCATGCTTGGCTGAATAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGCCTGGGATTACAGGCAGACACCACCATGCTTGGCTGAATAGT  745

seq1  GTTGGCTTTTAAGTTTCTAATTTATTGTTAGTGTGTATATGTGTATGTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTTTAAGTTTCTAATTTATTGTTAGTGTGTATATGTGTATGTTG  795

seq1  TACATGCAGAGGGACATGTGTCACAGCACATGTGTAGAAGTCAAAAAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCAGAGGGACATGTGTCACAGCACATGTGTAGAAGTCAAAAAACT  845

seq1  CCAAAAAATTCTCTTTTTCCCTCTTTTCCTGAATTCTGGGGGCCAGACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATTCTCTTTTTCCCTCTTTTCCTGAATTCTGGGGGCCAGACTC  895

seq1  TGATTATGGGGCTTCGGTGGTAGATTCCTTTGACCCGCTGAGCCATCTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGGGGCTTCGGTGGTAGATTCCTTTGACCCGCTGAGCCATCTCA  945

seq1  CCTGGCCTGCTCTGAACAGGGCCTCACTGTGTAGCCCATACTGGCTCTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGCTCTGAACAGGGCCTCACTGTGTAGCCCATACTGGCTCTGA  995

seq1  ACTCCTGGTATCTTCCCTACCTCAGTCTCCCAAAGGCTGGGGTAACTCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGTATCTTCCCTACCTCAGTCTCCCAAAGGCTGGGGTAACTCCT  1045

seq1  GAGCCACAATGCCCTGAACTAATTATGTACTTCAAAGGAGTAATTGTATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAATGCCCTGAACTAATTATGTACTTCAAAGGAGTAATTGTATG  1095

seq1  GTATCTGAATTC  1107
      ||||||||||||
seq2  GTATCTGAATTC  1107