BAC Information

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BAC

Clone NameB6Ng01-035O02
Chromosome7 (Build37)
Map Location 123,601,569 - 123,720,128
singlet/doubletdoublet
Overlap geneNucb2, LOC100043320
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798
Downstream geneEG668484, LOC668485, LOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035O02.bB6Ng01-035O02.g
ACCDH864230DH864231
length997908
definitionDH864230|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O02, 5' end.DH864231|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,601,569 - 123,602,586)(123,719,220 - 123,720,128)
sequence
gaattcttgatcctcctgcctccacctaccacatgctgcaattacaggct
catacccccatacctagcttcaccacacacttcaaatgcatacccatgtg
cattttgtgtgcgtgtgagtgcacgtgtgtacctgcgtgtgtccccatgt
gccatctacattgttcattggcccagagatctcacatttggctaggttgg
ctggcaaaccccagagatctgcatgtgtctgctttgccagcactggaatt
acattcacaagccaccacactgggcatttttgtttgttctttcaaaacag
ggattctctgtgtagtcttggctgtcctggaacttgctctgtagactagg
ctagctttctactcacagagaagataactgacccacacacacattatggc
acaagcatttgcacacatatgtatacatgtatacacacacacacacactc
atactttaaattttttaaagaagagaatgagtttccttgagaacacgagg
atttgtgtgctagacctactggtaagaaattgggatgaaacataaataag
attttgtgcttctcatgttatggacaatccagtggaggctaaccatctat
aaacgtcatctattaggcttgaaaatgaccttgagtccctaatagattca
gtagtgaataggaaaatggtggagtattggttgagagttcacagtaactc
aggctccatgctaaacaacatagcagcctccacatcccctcatgcacccc
taaattgtggaaggaaatatgcagtagtatatagattcctccagcctcca
gtggtacttgactggactcaggaattcaatgccatgaggagctggcagca
tactaatgcccatgatgcagatgtacataaaaacgagtcaggagacacac
agccaaactctcaggacacttctttatagctagcacaagctgacttatgc
tctgagttctgtctagagtctgactggattcaagcccactctgcttc
gaattctttaagcatgaggataataagaaggaaagagtgacaaaggtgat
aaactgaattatcagagaaggctgaagacagctccttactcctttcattg
atggactcatttctagatggccacatactgacagcagtaagcgtacttct
ccacattgttctatttaaaatagatcggttgttaagaagcatcataattt
ataaacaagataattaaatgagccctggctcaatgggatgttttagaaaa
tatctctcaaagaaacagaaaaacaaaaacaagcaaaaggcaggcagtga
tggtgcagacctttaatcccagcagtggggaggcaaagttaggcagatct
ctgagttccaggccagcctatgtgctggttaacattacatttaacgttta
agcttatcgtgcttaagaaaaaaaaaagtctcaaacgtggaagcccctag
gttgtacagttgttccctaacaacctaatacccagatattaaagtctatt
cttaaaactcactgggcttgtaaaaattaactgctcttgatcataagacg
aactgctatttctgcttttgtaatcaaacttgcttactctgatcaaaaag
acaattgcaagacctatgattataactttgttggttttcccttcaaaaac
cctggctgatatggttctttggtgaactctcagatgcagttctggcacta
gtttgggccaccagaacctaatttaaaagccttattaaaatttattcatt
gtgtggggtaccctgtgtgaaagatgtgtcctcttgtatattcaattctt
acttctgtaacagcagagagctattggcccatcactagtattggctaaag
gcatctagaatgtatttgatggcctctaataagaggtgatatgaggctgg
aagatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123601569_123602586
seq2: B6Ng01-035O02.b_46_1042

seq1  GAATTCTTGATCCTCCTGCCTCCACCTACCACATGCTGCAATTACAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCCTCCTGCCTCCACCTACCACATGCTGCAATTACAGGCT  50

seq1  CATACCCCCATACCTAGCTTCACCACACACTTCAAATGCATACCCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCCCATACCTAGCTTCACCACACACTTCAAATGCATACCCATGTG  100

seq1  CATTTTGTGTGCGTGTGAGTGCACGTGTGTACCTGCGTGTGTCCCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTGTGCGTGTGAGTGCACGTGTGTACCTGCGTGTGTCCCCATGT  150

seq1  GCCATCTACATTGTTCATTGGCCCAGAGATCTCACATTTGGCTAGGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTACATTGTTCATTGGCCCAGAGATCTCACATTTGGCTAGGTTGG  200

seq1  CTGGCAAACCCCAGAGATCTGCATGTGTCTGCTTTGCCAGCACTGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAACCCCAGAGATCTGCATGTGTCTGCTTTGCCAGCACTGGAATT  250

seq1  ACATTCACAAGCCACCACACTGGGCATTTTTGTTTGTTCTTTCAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACAAGCCACCACACTGGGCATTTTTGTTTGTTCTTTCAAAACAG  300

seq1  GGATTCTCTGTGTAGTCTTGGCTGTCCTGGAACTTGCTCTGTAGACTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTCTGTGTAGTCTTGGCTGTCCTGGAACTTGCTCTGTAGACTAGG  350

seq1  CTAGCTTTCTACTCACAGAGAAGATAACTGACCCACACACACATTATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCTACTCACAGAGAAGATAACTGACCCACACACACATTATGGC  400

seq1  ACAAGCATTTGCACACATATGTATACATGTATACACACACACACACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATTTGCACACATATGTATACATGTATACACACACACACACACTC  450

seq1  ATACTTTAAATTTTTTAAAGAAGAGAATGAGTTTCCTTGAGAACACGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAAATTTTTTAAAGAAGAGAATGAGTTTCCTTGAGAACACGAGG  500

seq1  ATTTGTGTGCTAGACCTACTGGTAAGAAATTGGGATGAAACATAAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGCTAGACCTACTGGTAAGAAATTGGGATGAAACATAAATAAG  550

seq1  ATTTTGTGCTTCTCATGTTATGGACAATCCAGTGGAGGCTAACCATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGCTTCTCATGTTATGGACAATCCAGTGGAGGCTAACCATCTAT  600

seq1  AAACGTCATCTATTAGGCTTGAAAATGACCTTGAGTCCCTAATAGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCATCTATTAGGCTTGAAAATGACCTTGAGTCCCTAATAGATTCA  650

seq1  GTAGTGAATAGGAAAATGGTGGAGTATTGGTTGAGAGTTCACAGTAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAATAGGAAAATGGTGGAGTATTGGTTGAGAGTTCACAGTAACTC  700

seq1  AGGCTCCATGCTAAACAACATAGGCAGCCTCCACATCCCCTCATGCACCC  750
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGCTCCATGCTAAACAACATA-GCAGCCTCCACATCCCCTCATGCACCC  749

seq1  CTAAATTGTGGAAGGAAAATATGCAGTAGTATATAGATT-CTCCAGCCTC  799
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  CTAAATTGTGGAAGG-AAATATGCAGTAGTATATAGATTCCTCCAGCCTC  798

seq1  CAGTGGTAACTGACTGGACTCAAGGAATTCAATGGCAATGAGGAGCTGGC  849
      ||||||||  ||||||||||| ||||||||||| || |||||||||||||
seq2  CAGTGGTACTTGACTGGACTC-AGGAATTCAAT-GCCATGAGGAGCTGGC  846

seq1  AGCATACTAATGCCCATGATGCAGATGTTAACATAAAAACGAGTCAAGAG  899
      ||||||||||||||||||||||||||||  |||||||||||||||| |||
seq2  AGCATACTAATGCCCATGATGCAGATGT--ACATAAAAACGAGTCAGGAG  894

seq1  ACAACACAGCCAAACTCTCAGGACACTTCCTTTTATAGCTAGCACCAGGG  949
      || ||||||||||||||||||||||||||  |||||||||||||| |  |
seq2  AC-ACACAGCCAAACTCTCAGGACACTTC--TTTATAGCTAGCACAA--G  939

seq1  CTGGACTTATGCTCTGAGTTTCCTGGTCTAGAGTCCTGGACTTGGATTTC  999
      || |||||||||||||||||  || ||||||||||   ||| |||| |||
seq2  CT-GACTTATGCTCTGAGTT--CT-GTCTAGAGTC--TGAC-TGGA-TTC  981

seq1  AAAGCCACACCTCTGCTTC  1018
      ||  |||   |||||||||
seq2  AAGCCCA---CTCTGCTTC  997

seq1: chr7_123719220_123720128
seq2: B6Ng01-035O02.g_68_975 (reverse)

seq1  GCCATCTCTCCAGCCCTACTATCACCTCTTTATTAGAGCCAATCAAATAC  50
      ||||||| ||||| |||  ||||||||| ||||||||| | |||||||||
seq2  GCCATCT-TCCAG-CCTCATATCACCTC-TTATTAGAGGCCATCAAATAC  47

seq1  AATTCTAGATTGCCTTAGCCAGATACTAGTGATGGGCC-ATAGCTCTCTG  99
       |||||||||  | ||||||| |||||||||||||||| |||||||||||
seq2  -ATTCTAGATGCCTTTAGCCA-ATACTAGTGATGGGCCAATAGCTCTCTG  95

seq1  CTGGTACAGAAGTAAGAATTGAATATAC-AGA-GACACATC-TTCACACA  146
      ||| |||||||||||||||||||||||| ||| |||||||| ||||||||
seq2  CTGTTACAGAAGTAAGAATTGAATATACAAGAGGACACATCTTTCACACA  145

seq1  GTGTACCCCACACAATGAATAAATTTTAATAAGGCTTTTAAATTAGGTTC  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCCCACACAATGAATAAATTTTAATAAGGCTTTTAAATTAGGTTC  195

seq1  TGGTGGCCAAACCTAGTGCCAGAACTGCATCTGAGAGTTCACCAAAGAAC  246
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCCAAACTAGTGCCAGAACTGCATCTGAGAGTTCACCAAAGAAC  245

seq1  CATATCAGCCAGGGTTTTTGAAGGGAAAACCAACAAAGTTATAATCATAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGCCAGGGTTTTTGAAGGGAAAACCAACAAAGTTATAATCATAG  295

seq1  GTCTTGCAATTGTCTTTTTGATCAGAGTAAGCAAGTTTGATTACAAAAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAATTGTCTTTTTGATCAGAGTAAGCAAGTTTGATTACAAAAGC  345

seq1  AGAAATAGCAGTTCGTCTTATGATCAAGAGCAGTTAATTTTTACAAGCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGCAGTTCGTCTTATGATCAAGAGCAGTTAATTTTTACAAGCCC  395

seq1  AGTGAGTTTTAAGAATAGACTTTAATATCTGGGTATTAGGTTGTTAGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTTTAAGAATAGACTTTAATATCTGGGTATTAGGTTGTTAGGGA  445

seq1  ACAACTGTACAACCTAGGGGCTTCCACGTTTGAGACTTTTTTTTTTCTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTACAACCTAGGGGCTTCCACGTTTGAGACTTTTTTTTTTCTTA  495

seq1  AGCACGATAAGCTTAAACGTTAAATGTAATGTTAACCAGCACATAGGCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGATAAGCTTAAACGTTAAATGTAATGTTAACCAGCACATAGGCTG  545

seq1  GCCTGGAACTCAGAGATCTGCCTAACTTTGCCTCCCCACTGCTGGGATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAACTCAGAGATCTGCCTAACTTTGCCTCCCCACTGCTGGGATTA  595

seq1  AAGGTCTGCACCATCACTGCCTGCCTTTTGCTTGTTTTTGTTTTTCTGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGCACCATCACTGCCTGCCTTTTGCTTGTTTTTGTTTTTCTGTT  645

seq1  TCTTTGAGAGATATTTTCTAAAACATCCCATTGAGCCAGGGCTCATTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGAGATATTTTCTAAAACATCCCATTGAGCCAGGGCTCATTTAA  695

seq1  TTATCTTGTTTATAAATTATGATGCTTCTTAACAACCGATCTATTTTAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGTTTATAAATTATGATGCTTCTTAACAACCGATCTATTTTAAA  745

seq1  TAGAACAATGTGGAGAAGTACGCTTACTGCTGTCAGTATGTGGCCATCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAATGTGGAGAAGTACGCTTACTGCTGTCAGTATGTGGCCATCTA  795

seq1  GAAATGAGTCCATCAATGAAAGGAGTAAGGAGCTGTCTTCAGCCTTCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGTCCATCAATGAAAGGAGTAAGGAGCTGTCTTCAGCCTTCTCT  845

seq1  GATAATTCAGTTTATCACCTTTGTCACTCTTTCCTTCTTATTATCCTCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTCAGTTTATCACCTTTGTCACTCTTTCCTTCTTATTATCCTCAT  895

seq1  GCTTAAAGAATTC  909
      |||||||||||||
seq2  GCTTAAAGAATTC  908