BAC Information

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BAC

Clone NameB6Ng01-035P09
Chromosome7 (Build37)4 (Build37)
Map Location 36,122,827 - 36,123,095145,293,159 - 145,294,054
singlet/doubletsingletsinglet
Overlap geneRhpn2
Upstream geneLsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1
Downstream geneC230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035P09.bB6Ng01-035P09.g
ACCDH864288DH864289
length7851,023
definitionDH864288|Mus musculus domesticus DNA, BAC clone: B6Ng01-035P09, 5' end.DH864289|Mus musculus domesticus DNA, BAC clone: B6Ng01-035P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,122,827 - 36,123,095)(145,293,159 - 145,294,054)
sequence
gaattctctacttcatgttccctgtgccttctatcctttgtgtgtctgtt
cagttagtttaaatctttaacttcctgaaggctgcctcatgcaattctcc
gtttctatctgtcttttgtctccatgtgtaaggtagaaaatttaagtttg
accccctagaccaagttggagccaagaacgaaaaataggtggtccctgaa
gcaccctgttcggagaatggctgatcacagaacaggtaattacacaagcc
agttcagtgatcctgttctaggacctggctgaccacaaaagttagattaa
aatcttgagaacctcaatacctgtggagaatccatgcaggccagaagagg
aaattgtgacccaaaggttggaatgtcactttgatgtatactagtctgac
ctcaaaagtagaggaatacacctgccacagtgttctgattgctgggatta
tgtcagcaacacttgcatgtttttttttaaagatttatttattttatgta
tatgagtacacattttagttgtacagatggttgtgagccttcatgtgatt
gttgggaattgaactgagaacctctatttgctctggccaaccccacttgc
tccagccaaagatttattagtataagttcgctgtagctgtcttcaaacgc
accagaagagggtatcagatctcattatgggtggttgtgagccaccatgt
gggttgctgggatttgaactcagtacctttggaaggagggttttcactac
agtgcaagaaaaagtacactttttttttttttttt
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaagct
ttactgagaaagtcaatctgagaaggcatcagagaactcatacaggggag
aattcttacaaatgtattgaatgtgacaaatgttttgcccagaaatccta
tcttgtttttaatcacagaaatcatacattaaagaagccttacaaatgca
gtcaatgtgacaaatgattttcccacaaacttagtctgagaatgcatcag
agaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaa
tgctttactaataaaggcagactgagaattaatcagataatttatacatt
taaaaaaacccttacaagtattttgtatgtgataaatgcagtacccacaa
catcagtctgacaaatcaacagatatttcaaacagtagagcaacattata
aatgaaatgaatgagatagtcctttaacaagaaatatcatcttaaaattc
actggagaattcttccaaaagggaaacttttcaaatacattgacggtttg
aatcctttattttggcctatctcttagaatgtaatagataatttatacag
tcaagaatcttaacaaatataatatatgctgaaaatatcttttgactttc
atttcagtgcagaaaaaaatatgtaaaaaaatttttttatgggaaaaata
gttcttctggggaaatgtggcatatgttttacacgggtaatattcttttc
aacagtcagtgctctaaactagaaaattattatgaatctgaaaacttttg
aaaccttcatgcaatgttcaaatctagataatgtcaactatattgctggc
agtaactctgaatatatgaatagtgaagaaacatttcattaacttttact
tggtcaccctcaaatattatatgatgaagtcagtgtgaaagcagagaata
tgatgttgtgcaccatcatgagatagatgatcattcaaaggactaataaa
ttactatcgctcaaatgtaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_36122827_36123095
seq2: B6Ng01-035P09.b_515_780

seq1  TTTTTTTTTTAAGATTTATTTATTTTATGTATATGAGTACACACTTTAGT  50
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTTTTTAAAGATTTATTTATTTTATGTATATGAGTACACATTTTAGT  50

seq1  TGTACAGATGGTTGTGAGCCTTCATGTGATTGTTGGGAATTGAACTTAGG  100
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  TGTACAGATGGTTGTGAGCCTTCATGTGATTGTTGGGAATTGAACTGAGA  100

seq1  ACCTCTGCTTGCTCTGGCCAACCCCACTTGCTCCGGCCAAAGATTTATTT  150
      ||||||  |||||||||||||||||||||||||| |||||||    ||||
seq2  ACCTCTATTTGCTCTGGCCAACCCCACTTGCTCCAGCCAAAG----ATTT  146

seq1  ATTAGTATAAGTTCACTATAGCTGTCTTCAAACGCACCAGAAGAGGGCAT  200
      |||||||||||||| || ||||||||||||||||||||||||||||| ||
seq2  ATTAGTATAAGTTCGCTGTAGCTGTCTTCAAACGCACCAGAAGAGGGTAT  196

seq1  CAGATCTCATTATGGGTGGTTGTGAGCCACCATGT-GGTTGCTGGGATTT  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGGTTGCTGGGATTT  246

seq1  GAACTCAGTACCTTTGGAAG  269
      ||||||||||||||||||||
seq2  GAACTCAGTACCTTTGGAAG  266

seq1: chr4_145293159_145294054
seq2: B6Ng01-035P09.g_217_1090

seq1  ATCTTGTTTTTAATCACAGAAATCATACATTAAAGAAGCCTTACAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTTTTAATCACAGAAATCATACATTAAAGAAGCCTTACAAATGC  50

seq1  AGTCAATGTGACAAATGATTTTCCCACAAACTTAGTCTGAGAATGCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGTGACAAATGATTTTCCCACAAACTTAGTCTGAGAATGCATCA  100

seq1  GAGAATTCATACAGTAGAGAAAACTTACAAAAATGCAGTGAATGTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCATACAGTAGAGAAAACTTACAAAAATGCAGTGAATGTGATAA  150

seq1  ATGCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACAT  200

seq1  TTAAAAAAACCCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAACCCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACA  250

seq1  ACATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGCAACATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGCAACATTAT  300

seq1  AAATGAAATGAATGAGATAGTCCTTTAACAAGAAATATCATCTTAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATGAATGAGATAGTCCTTTAACAAGAAATATCATCTTAAAATT  350

seq1  CACTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTT  400

seq1  GAATCCTTTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACA  450

seq1  GTCAAGAATCTTAACAAATATAATATATGCTG-AAATATC-TTTGAC-TT  497
      |||||||||||||||||||||||||||||||| ||||||| |||||| ||
seq2  GTCAAGAATCTTAACAAATATAATATATGCTGAAAATATCTTTTGACTTT  500

seq1  CATTTCAGTGCAG-AAAAAATATGTAAAAAAATTTTTTTATGGGAAAAAT  546
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGTGCAGAAAAAAATATGTAAAAAAATTTTTTTATGGGAAAAAT  550

seq1  AGTTCTCCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTT  596
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTT  600

seq1  CAACAGTCAGTGCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTT  646
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAACAGTCAGTGCTCTAAACTAGAAAATTATTATGAATCTGAAAACTTTT  650

seq1  GAAAACCTTCATGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCT  696
      | |||||||||||||||||||||||| |||||||||||||||||  ||||
seq2  G-AAACCTTCATGCAATGTTCAAATC-TAGATAATGTCAACTATATTGCT  698

seq1  GGCAGTAACTCTGAATATATG-ATAGTGAAGAAACATTTTCATTAAACTT  745
      ||||||||||||||||||||| |||||||||||||| ||||||| |||||
seq2  GGCAGTAACTCTGAATATATGAATAGTGAAGAAACA-TTTCATT-AACTT  746

seq1  TTACTTGTTCACCCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCA  795
      ||||||| ||||||||||||||||||||||||||||| ||||||||| ||
seq2  TTACTTGGTCACCCTCAAATATTATATGATGAAGTCA-GTGTGAAAG-CA  794

seq1  GAAGAATATGATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTC  845
      | |||||||||||||||||| ||  |||| |||||||  ||||| |||||
seq2  G-AGAATATGATGTTGTGCACCA--TCAT-GAGATAG--ATGAT-CATTC  837

seq1  CAAAAGGAAACTAAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATA  895
        |||||  ||| ||||||     |||||||||  |||||   | |||||
seq2  --AAAGG--ACT-AATAAA----TTACTATCGC--TCAAA---TGTAATA  873

seq1  A  896
      |
seq2  A  874