BAC Information

Click to search

BAC

Clone NameB6Ng01-036D04
Chromosome7 (Build37)
Map Location 85,839,484 - 85,980,616
singlet/doubletdoublet
Overlap geneMrpl46, Mrps11, Det1
Upstream geneA330068G13Rik, Ntrk3
Downstream geneIsg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036D04.bB6Ng01-036D04.g
ACCDH864451DH864452
length1,177694
definitionDH864451|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D04, 5' end.DH864452|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,839,484 - 85,840,706)(85,979,924 - 85,980,616)
sequence
gaattctgggaataattgtccacctagctcagttgtcattgaaaagaaat
gaatgaaaactgaaaggaacagcctcgtgtaccctcaacagtccctctac
agagaatagacccatttctaaacacaggtcaaaatatctcagagtcacca
ctcttggcttaagacactgctctgatcctcttaatggaagacttgggtac
catacagccagcctcaccccaacccaggcaatgtaagagtagtacaatgt
agtccatcatgttgtggtcactacactatatcctccactggcatttctgg
gtccacttagcctttctggcagttccaggataccagtgcattgggtggtt
gtgaccgcagcctccttgtgtctcaggccctatgattgcgtgcagaaatg
gccaggatcagaaaaggtgatgtaagtcacaaacttagcaggtgccacag
ttggttctgaaaattacacaaacttaaatcttttggacctcataatcacc
cctctgttggatactactttattcctttttacaaatctttcattaattag
tatgtattgattgcacttatgaatggtgtcaatgtggtatttcaacccat
gcatatagcacacactgatcaaaatcacaagtcatttagttttcagatgt
ctctcatctatatctttcattaaatatataacaagaaatttttgtccctt
tttttggtacttcagaacaccagaacatatttctatctatatatttaact
gtatttggcacccattatctaacctcccagtgagtgtcccccgccccttt
tgcagatgaagaggctgaagctctggagatagtaacttagcacagtgcct
gccaagaatatagtactcacattaaacaacactctctaatagttgatgcc
taattgtcaccatcactacccctcatctcctcattaaaaaattcgtagtc
aaaaattccatgtagtccctgccccctctttagatatcatcaacgcttta
atcagttcttgagtctgatgtagtcagatcacgttgagctgaaactgtgt
aaacaccagtctactcagctcactattagtaccacaggcttgggatagat
agttactaccttgcgattatttcatttatgagtgccgctatagaagaaag
ttttcaccattgtagtggcagcctatg
gaattcaaggttgttgagcatgcaggtggtggagctgtttcacgattgac
tatgagttctaagatgcctaaagaagaaagaagacttaatgggtgtgtga
gatggaagaaaaatgttggggagctaggagaggatggcgggaacatggga
tggtcacctggagtgcagtgcttgcagggtgaggcgaggttattggaata
cagggcagaggctgaggggaaagccaggctaggctatgctgttagaagga
tctttaccaagaattttggagtcacccagagttaagagatgttagttgga
cagaatgacacagctaagaaagagctaagaactgcagagtccagagagat
ggcttctttatatttcaggcagtgtggggctggagaatggagatcaggtg
agtgttgctgaagaataggagccgcttcaatgtacagatctgcaggctgt
cctagagactttgtggtcattacacagccgtgagtcagcgcctatcgtgt
ggccatcagtggtggcagggacagagaaacagctccatggtgtcacctgt
aagtagcctgaagagtttacttatcctttggggacctttactgcagatcc
atggcatggctacagaaaagagtctcaggatgtggcagaattgaaagtta
taaaagggctggagagatgtcttcggtggttaagagcactgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_85839484_85840706
seq2: B6Ng01-036D04.b_42_1218

seq1  GAATTCTGGGAATAATTGTCCACCTAGCTCAGTTGTCATTGAAAAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAATAATTGTCCACCTAGCTCAGTTGTCATTGAAAAGAAAT  50

seq1  GAATGAAAACTGAAAGGAACAGCCTCGTGTACCCTCAACAGTCCCTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAACTGAAAGGAACAGCCTCGTGTACCCTCAACAGTCCCTCTAC  100

seq1  AGAGAATAGACCCATTTCTAAACACAGGTCAAAATATCTCAGAGTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGACCCATTTCTAAACACAGGTCAAAATATCTCAGAGTCACCA  150

seq1  CTCTTGGCTTAAGACACTGCTCTGATCCTCTTAATGGAAGACTTGGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCTTAAGACACTGCTCTGATCCTCTTAATGGAAGACTTGGGTAC  200

seq1  CATACAGCCAGCCTCACCCCAACCCAGGCAATGTAAGAGTAGTACAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGCCAGCCTCACCCCAACCCAGGCAATGTAAGAGTAGTACAATGT  250

seq1  AGTCCATCATGTTGTGGTCACTACACTATATCCTCCACTGGCATTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATCATGTTGTGGTCACTACACTATATCCTCCACTGGCATTTCTGG  300

seq1  GTCCACTTAGCCTTTCTGGCAGTTCCAGGATACCAGTGCATTGGGTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTTAGCCTTTCTGGCAGTTCCAGGATACCAGTGCATTGGGTGGTT  350

seq1  GTGACCGCAGCCTCCTTGTGTCTCAGGCCCTATGATTGCGTGCAGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCGCAGCCTCCTTGTGTCTCAGGCCCTATGATTGCGTGCAGAAATG  400

seq1  GCCAGGATCAGAAAAGGTGATGTAAGTCACAAACTTAGCAGGTGCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGATCAGAAAAGGTGATGTAAGTCACAAACTTAGCAGGTGCCACAG  450

seq1  TTGGTTCTGAAAATTACACAAACTTAAATCTTTTGGACCTCATAATCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTGAAAATTACACAAACTTAAATCTTTTGGACCTCATAATCACC  500

seq1  CCTCTGTTGGATACTACTTTATTCCTTTTTACAAATCTTTCATTAATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTGGATACTACTTTATTCCTTTTTACAAATCTTTCATTAATTAG  550

seq1  TATGTATTGATTGCACTTATGAATGGTGTCAATGTGGTATTTCAACCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTGATTGCACTTATGAATGGTGTCAATGTGGTATTTCAACCCAT  600

seq1  GCATATAGCACACACTGATC-AAATCACAAGTCA-TTAGTTTTCAGATGT  648
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GCATATAGCACACACTGATCAAAATCACAAGTCATTTAGTTTTCAGATGT  650

seq1  CTCTCATCTATATC-TTCATTAAATATATAACAAG-AACTTTTGTCCCTT  696
      |||||||||||||| |||||||||||||||||||| || |||||||||||
seq2  CTCTCATCTATATCTTTCATTAAATATATAACAAGAAATTTTTGTCCCTT  700

seq1  TTTTTGGTACTTCAGAACACCAGAACATA-TTCTATCTATATATTTAACT  745
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTGGTACTTCAGAACACCAGAACATATTTCTATCTATATATTTAACT  750

seq1  GTATTTGGCACCCATTATCTAACCTCCCAGTGAGTGTCCCCCGCCCCTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGCACCCATTATCTAACCTCCCAGTGAGTGTCCCCCGCCCCTTT  800

seq1  TGCAGATGAAGAGGCTGAGGCTCTGGAGATAAGTAACTTAGCACAGTGCC  845
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TGCAGATGAAGAGGCTGAAGCTCTGGAGAT-AGTAACTTAGCACAGTGCC  849

seq1  TGCCAAGAATTAAGTACTCACA-TAAACAACAACTCTCCTATAGTTGATG  894
      ||||||||||  |||||||||| |||||||| ||||||  ||||||||||
seq2  TGCCAAGAATATAGTACTCACATTAAACAAC-ACTCTCTAATAGTTGATG  898

seq1  CCATAATTGTCACCATCACTA-CCCTCATCTCCTCATCTAGAATACTCGG  943
      || |||||||||||||||||| ||||||||||||||| || || | || |
seq2  CC-TAATTGTCACCATCACTACCCCTCATCTCCTCAT-TAAAAAATTC-G  945

seq1  TAGTCAAAATATTCCATGATGTCTCCTGCCCCCCTCTTTTAGATATCATC  993
      ||||||||| ||||||||  ||| |||| ||||||| |||||||||||||
seq2  TAGTCAAAA-ATTCCATGTAGTC-CCTG-CCCCCTC-TTTAGATATCATC  991

seq1  AAACGCTTTAAATCAGTTTCTTGAGGTCTGATGTAAGTCAGAACCACCGT  1043
       |||||||| |||||| ||||||| ||||||||| |||||| | |||   
seq2  -AACGCTTT-AATCAG-TTCTTGA-GTCTGATGT-AGTCAG-ATCAC--G  1033

seq1  TTGAGGCTGAAAACTGTGAAAACACACAAGTTCTACTCCAGCTCAACTAA  1093
      |||| |||| |||||||| |||||| ||   |||||| |||||| |||  
seq2  TTGA-GCTG-AAACTGTGTAAACAC-CA--GTCTACT-CAGCTC-ACT--  1074

seq1  ATAAGAACACACAGGCTTGGGGACTAAGATTAGGGTTTTACTACACCTTG  1143
      || || || ||||||||||||     ||| |||    |||||  ||||||
seq2  ATTAGTAC-CACAGGCTTGGG---ATAGA-TAG----TTACT--ACCTTG  1113

seq1  CAGATTATTCTAATTTTAATTTGAAAGTTGCTAGCATAGAATGAAGAAAG  1193
      | ||||||| | |||    | |||  |  |||   |||    ||||||||
seq2  C-GATTATT-TCATT----TATGAGTGCCGCT---ATA----GAAGAAAG  1150

seq1  TTTTACAGACATTGTGATGGGCAGCCTATG  1223
      |||| ||  |||||| |  |||||||||||
seq2  TTTT-CA-CCATTGT-AGTGGCAGCCTATG  1177

seq1: chr7_85979924_85980616
seq2: B6Ng01-036D04.g_67_760 (reverse)

seq1  AGTCAGTGCTCTTAACCACCG-AGACATCTCTCCAGCCCTTTAATAACTT  49
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  AGTCAGTGCTCTTAACCACCGAAGACATCTCTCCAGCCCTTTTATAACTT  50

seq1  TCAATTCTGCCACATCCTGAGACTCTTTTCTGTAGCCATGCCATGGATCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTGCCACATCCTGAGACTCTTTTCTGTAGCCATGCCATGGATCT  100

seq1  GCAGTAAAGGTCCCCAAAGGATAAGTAAACTCCTCAGGCTACTTACAGGT  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCAGTAAAGGTCCCCAAAGGATAAGTAAACTCTTCAGGCTACTTACAGGT  150

seq1  GACACCATGGAGCTGTTTCTCTGTCCCTGCCACCACTGATGGCCACACGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATGGAGCTGTTTCTCTGTCCCTGCCACCACTGATGGCCACACGA  200

seq1  TAGGCGCTGACTCACGGCTGTGTAATGACCACAAAGTCTCTAGGACAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGCTGACTCACGGCTGTGTAATGACCACAAAGTCTCTAGGACAGCC  250

seq1  TGCAGATCTGTACATTGAAGCGGCTCCTATTCTTCAGCAACACTCACCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCTGTACATTGAAGCGGCTCCTATTCTTCAGCAACACTCACCTG  300

seq1  ATCTCCATTCTCCAGCCCCACACTGCCTGAAATATAAAGAAGCCATCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATTCTCCAGCCCCACACTGCCTGAAATATAAAGAAGCCATCTCT  350

seq1  CTGGACTCTGCAGTTCTTAGCTCTTTCTTAGCTGTGTCATTCTGTCCAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCTGCAGTTCTTAGCTCTTTCTTAGCTGTGTCATTCTGTCCAAC  400

seq1  TAACATCTCTTAACTCTGGGTGACTCCAAAATTCTTGGTAAAGATCCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTCTTAACTCTGGGTGACTCCAAAATTCTTGGTAAAGATCCTTC  450

seq1  TAACAGCATAGCCTAGCCTGGCTTTCCCCTCAGCCTCTGCCCTGTATTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCATAGCCTAGCCTGGCTTTCCCCTCAGCCTCTGCCCTGTATTCC  500

seq1  AATAACCTCGCCTCACCCTGCAAGCACTGCACTCCAGGTGACCATCCCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTCGCCTCACCCTGCAAGCACTGCACTCCAGGTGACCATCCCAT  550

seq1  GTTCCCGCCATCCTCTCCTAGCTCCCCAACATTTTTCTTCCATCTCACAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCGCCATCCTCTCCTAGCTCCCCAACATTTTTCTTCCATCTCACAC  600

seq1  ACCCATTAAGTCTTCTTTCTTCTTTAGGCATCTTAGAACTCATAGTCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTAAGTCTTCTTTCTTCTTTAGGCATCTTAGAACTCATAGTCAAT  650

seq1  CGTGAAACAGCTCCACCACCTGCATGCTCAACAACCTTGAATTC  693
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAACAGCTCCACCACCTGCATGCTCAACAACCTTGAATTC  694