BAC Information

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BAC

Clone NameB6Ng01-036E01
ChromosomeX (Build37)7 (Build37)
Map Location 3,562,988 - 3,563,61532,429,904 - 32,430,618
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC385516, LOC434721, LOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961
Downstream geneLOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036E01.bB6Ng01-036E01.g
ACCDH864490DH864491
length909807
definitionDH864490|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E01, 5' end.DH864491|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,562,988 - 3,563,615)(32,429,904 - 32,430,618)
sequence
gaattccttataaccctattggacaagaaatagataaatgtgctcatcac
acttgtataaattggcttttaaaaacaaaacaggggcagttatatccccc
aaggtcaccaaaggcacatattgcttttactttatttgttctaaattttt
gcaaactgatgttaaaagtcagtctgcagtggatcgccactggcatcagt
tacttctagttcttttgccatggtaatgtggcaggacccattaactaatg
aatggaagggtcccaacccagtcctaatctgggaaagaggcttggtctgt
gttttttcacaaaaagaaggagcgtgatggcctcctgagagattagttga
acacctagacacagatcctgaatcttctagtaagtaggactctaaacttg
attttggttaaaaaatcctctttagccaaaaagttaaattagagcacttt
ccactcccagggaagctgtaagcctttctgcaattctcaaagtcacctcc
cccaggttgggagctctaagtctagcctgatctttgctaatttgcaattg
aatggaatacctggacttccccaaaagaagcttttgtactgtgtctttca
ctgtctccactttgtttttcaagcaggtcagtcaatgcccttctgcttga
ctgcagcaggcgtgcatccccgcccacaacagtgcacaggtggcagttat
aatttctatcacgaagaattctaagtacatattgtgactttggtctgatt
tgggaataagtgtgctatgagggctggttagtcaatgactggcaccagat
ctcagatcataccaatctaagacaggggtatatgccaaaagcccgtggct
gtataatacaccacaaagccatgcttttgtgatatgacacaagtagctac
atgtactgc
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaacgctgaga
acggctaagatgaaaaattcaggtgacagcagatgctggcgaagatgtgg
agaaagaggtgcattcctccgttgttgaggtctccctcggacccacaaat
aactgaatccctcgggaggggatacaccacaggttcttttattattcaga
cttctttttgctatcctaggttttttattattccagatgaattttcaaat
tgccctttctaactcagtgaagaattgagttgcaattttgttggagagtg
cattaaatgtgtagattgctttcggcaggatagccattttgaatattaat
ccttccaatccatgagcatagtagatctttccatcttatgagatcttctt
caatttctttgtttagaaatttgaacttgttatcatagagatctttcact
tccttagagtcacacaaaagtattttatattatttgtgactattgtgagg
ggtgttgttttttctaattttttttctcagtcggttttatccttttgtgt
agagaaaagttcattgattttgtttgaggtaatatttatatccagctact
tcactgaatctgtttgtaagttaagaagttctcttgtagaaattttaggg
tcacatacataaactattcataatcatctggaaaggaatgatatttttga
cttcttcctttccaatttgtatccctttgatcttcttgtggtgtcgaatt
gctcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3562988_3563615
seq2: B6Ng01-036E01.b_319_946

seq1  TCTGGGAA--------TGTCTGTGTTTTTTCACAAAAAGAAGATGGAGCG  42
      ||||||||         ||||||||||||||||||||||||   ||||||
seq2  TCTGGGAAAGAGGCTTGGTCTGTGTTTTTTCACAAAAAGAA---GGAGCG  47

seq1  TGATGGCTGCCTGAGAGGTTAGTTCGACAACTAGACACAGATCCTGAATC  92
      |||||||  |||||||| ||||||  ||| ||||||||||||||||||||
seq2  TGATGGCCTCCTGAGAGATTAGTTGAACACCTAGACACAGATCCTGAATC  97

seq1  TTCTAGTAAGTATGACTCTAACCTTGATCATGGCT-AAAAATCCTCTTTA  141
      |||||||||||| |||||||| ||||||  ||| | ||||||||||||||
seq2  TTCTAGTAAGTAGGACTCTAAACTTGATTTTGGTTAAAAAATCCTCTTTA  147

seq1  GCCAAAAAGTTAAATTAGAGCACAGCCGCCACTCCCAGGGATGCTGTAAG  191
      |||||||||||||||||||||||     ||||||||||||| ||||||||
seq2  GCCAAAAAGTTAAATTAGAGCAC--TTTCCACTCCCAGGGAAGCTGTAAG  195

seq1  CCTTTCTGCAATTCTCAAAACCACCTCCCCCACACCGGGAGCTCTAAGTC  241
      |||||||||||||||||||  |||||||||||    ||||||||||||||
seq2  CCTTTCTGCAATTCTCAAAGTCACCTCCCCCAGGTTGGGAGCTCTAAGTC  245

seq1  TGGCCTGATCATTGCTGATTTACAATTGAATGGAGTACCTGGACTTCCCC  291
      | |||||||| ||||| |||| |||||||||||| |||||||||||||||
seq2  TAGCCTGATCTTTGCTAATTTGCAATTGAATGGAATACCTGGACTTCCCC  295

seq1  AAAAGAAGCTTTTGTACTGTGCCTTTCACTGTCTGGACTTTGTTTTTCAA  341
      ||||||||||||||||||||| ||||||||||||  ||||||||||||||
seq2  AAAAGAAGCTTTTGTACTGTGTCTTTCACTGTCTCCACTTTGTTTTTCAA  345

seq1  GCAGGTCAGTCAATGCCCTTCAGCCTGACTGCAGTGGGCATGCATTCCCA  391
      ||||||||||||||||||||| || |||||||||  ||| ||||| ||| 
seq2  GCAGGTCAGTCAATGCCCTTCTGCTTGACTGCAGCAGGCGTGCATCCCCG  395

seq1  CCCCCAACAGCACGCAGGTGGCAGTTATTAATTTTCATCAAGAAGAATTC  441
      ||| ||||||  | ||||||||||||| ||||||  |||| |||||||||
seq2  CCCACAACAGTGCACAGGTGGCAGTTA-TAATTTCTATCACGAAGAATTC  444

seq1  TAAGTACATATTGTGGCTTTGGTCTGATTTGGGAATAAGGTGTGCTATGA  491
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  TAAGTACATATTGTGACTTTGGTCTGATTTGGGAATAA-GTGTGCTATGA  493

seq1  GGGCAGGTTAGTCAATGACAGGCAACCAGATCCCGGATCATACCAATCTA  541
      |||| |||||||||||||| ||| |||||||| | |||||||||||||||
seq2  GGGCTGGTTAGTCAATGACTGGC-ACCAGATCTCAGATCATACCAATCTA  542

seq1  AGACAGGGGTACATGCCAAAAGTCCGTGGCTGTTGATAATACACCACAGA  591
      ||||||||||| |||||||||| ||||||||||  ||||||||||||| |
seq2  AGACAGGGGTATATGCCAAAAGCCCGTGGCTGT--ATAATACACCACAAA  590

seq1  GCCATGCTTGTGTAAATTATAACAC---TAGCTACATGTA  628
      ||||||||| ||| |  ||| ||||   ||||||||||||
seq2  GCCATGCTTTTGTGA--TATGACACAAGTAGCTACATGTA  628

seq1: chr7_32429904_32430618
seq2: B6Ng01-036E01.g_66_787

seq1  GAATTCTCACCTGAGGAATACCAAATGGCAGAGAAGCACCTGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCAAATGGCAGAGAAGCACCTGAAAAAAAT  50

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACGCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACGCTGAGA  100

seq1  ACGGCTAAGATGAAAAATTCAGGTGACAGCAGATGCTGGCGAAGATGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTAAGATGAAAAATTCAGGTGACAGCAGATGCTGGCGAAGATGTGG  150

seq1  AGAAAGAGGTGCATTCCTCCGTTGTTGAGGTCTCCCTCGGACCCACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGTGCATTCCTCCGTTGTTGAGGTCTCCCTCGGACCCACAAAT  200

seq1  AACTGAATCCCTCGGGAGGGGATACACCACAGGTTCTTTTATTATTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATCCCTCGGGAGGGGATACACCACAGGTTCTTTTATTATTCAGA  250

seq1  CTTCTTTTTGCTATCCTAGGTTTTTTATTATTCCAGATGAATTTTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTGCTATCCTAGGTTTTTTATTATTCCAGATGAATTTTCAAAT  300

seq1  TGCCCTTTCTAACTCAGTGAAGAATTGAGTTGCAATTTTGTTGGAGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTCTAACTCAGTGAAGAATTGAGTTGCAATTTTGTTGGAGAGTG  350

seq1  CATTAAATGTGTAGATTGCTTTCGGCAGGATAGCCATTTTGAATATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATGTGTAGATTGCTTTCGGCAGGATAGCCATTTTGAATATTAAT  400

seq1  CCTTCCAATCCATGAGCATAGTAGATCTTTCCATCTTATGAGATCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAATCCATGAGCATAGTAGATCTTTCCATCTTATGAGATCTTCTT  450

seq1  CAATTTCTTTGTTTAGAAATTTGAACTTGTTATCATAGAGATCTTTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTTTGTTTAGAAATTTGAACTTGTTATCATAGAGATCTTTCACT  500

seq1  TCCTTAGAGTCACACAAAAGTATTTTATATTATTTGTGACTATTGTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAGTCACACAAAAGTATTTTATATTATTTGTGACTATTGTGAGG  550

seq1  GGTGTTG-TTTCTCTAA-TTTTTTTCTCAGTCGG-TTTATCC-TTTGTGT  596
      ||||||| ||| ||||| |||||||||||||||| ||||||| |||||||
seq2  GGTGTTGTTTTTTCTAATTTTTTTTCTCAGTCGGTTTTATCCTTTTGTGT  600

seq1  AGAGAAAAG-TCATTGA-TTTGTTTGAGGTAATA-TTATATCCAGCTACT  643
      ||||||||| ||||||| |||||||||||||||| |||||||||||||||
seq2  AGAGAAAAGTTCATTGATTTTGTTTGAGGTAATATTTATATCCAGCTACT  650

seq1  TCACTGAATCTGTTTGTCAGGTTTAGAAGTTCTCTTGTAGAAATTTTAGG  693
      ||||||||||||||||| | ||| ||||||||||||||||||||||||||
seq2  TCACTGAATCTGTTTGT-AAGTTAAGAAGTTCTCTTGTAGAAATTTTAGG  699

seq1  GTCACATACATAAACTA-TCATA  715
      ||||||||||||||||| |||||
seq2  GTCACATACATAAACTATTCATA  722