BAC Information

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BAC

Clone NameB6Ng01-036L12
Chromosome7 (Build37)
Map Location 52,873,093 - 53,028,910
singlet/doubletdoublet
Overlap geneFut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
Upstream geneMyh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21
Downstream geneEG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036L12.bB6Ng01-036L12.g
ACCDH864802DH864803
length1,024421
definitionDH864802|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L12, 5' end.DH864803|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,873,093 - 52,874,128)(53,028,484 - 53,028,910)
sequence
cttgcaccaccagcaaggagctcaggttagttggcactggggatgccaga
cgcccagggatgagtatttaggctcctctaacccttatcccgtcgtcctc
aaaacatggaagctatcccaaacctatccccattaagaatcccttccctt
gggctggtgagatggctcagtgggtaagagcacctgactgctcttccaaa
ggtccagagttcaaatcccagcaaccacatggtggctcacaaccatccgt
aacaagatctgactccctcttctggtgtgtctgaagacagctacagtgta
cttacatataataaataaataaatctttaaaaaaaaaaaaaaatcccttc
ccttctgtcagagcaaggatcttaaggactcagggaactatccacaggcc
tccttccgggatgcagcttttgtgagctctcacctgtacttgcagtaggc
tttttaactatgtagctgccttggaatcacccaaactttttgtaagtgac
ccctctcaataagttcactaagccggacatgggctgaatcgtttcttgag
tatgtaactgggtcttttatgtaagataaactgatgtttgttcctgtctc
acaggaaaagttatacaacatccaggggcttgcttttacagttctaaaat
cccttctctttactggttttcccctggctcccagctattgccctgggagg
caaatggtccccccacatataggtgcactccagaaggaagttgagctgtg
aagttccaaaaaggccccaagaccttctggtcttgcagcccctctttggc
atagctcctggacttcactgaaaattcagaacttggaggagtctcaaatc
caactcggggggctaaacctggggtgtttcaactcgtctttcctcccaaa
ctagtggactcccaccggaggcacttctgctggctttttgtttgttgtgt
gtctctgccggtcctctttttcccctgatggaggaaacttctttcaattg
tctaactctctttggccgtgttca
ctctgcaccatcctaggctaggctgatgcacggccctctccgaagctgct
tgatcagccccacacatggtggctgcattccgaaagcaagacacaaggag
gtgatatgtctttttaaagttttgtatcatctgtgaaatgaaagtaacag
ccttccaggcaggagtttcaatgatggagggaattaagtagtctgcagcc
atccccaggcaaatgattccgtgaatgccgccgctgtgagaggtaggaac
ggtgttagggaggtcactgcctcacacctggagttccaacacttagaaag
ccgaggcagggagggtgctacaagtttgaaggtagcctgggctacaaagt
gagtccttgtttatttcttttgtcgattttattttattgtatgtatgtat
gtatgtatgtatgtatgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52873093_52874128
seq2: B6Ng01-036L12.b_50_1073

seq1  CTTGCACCACCAGCAAGGAGCTCAGGTTAGTTGGCACTGGGGATGCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACCACCAGCAAGGAGCTCAGGTTAGTTGGCACTGGGGATGCCAGA  50

seq1  CGCCCAGGGATGAGTATTTAGGCTCCTCTAACCCTTATCCCGTCGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGGGATGAGTATTTAGGCTCCTCTAACCCTTATCCCGTCGTCCTC  100

seq1  AAAACATGGAAGCTATCCCAAACCTATCCCCATTAAGAATCCCTTCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGAAGCTATCCCAAACCTATCCCCATTAAGAATCCCTTCCCTT  150

seq1  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCAAA  200

seq1  GGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT  250

seq1  AACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTA  300

seq1  CTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAATCCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAATCCCTTC  350

seq1  CCTTCTGTCAGAGCAAGGATCTTAAGGACTCAGGGAACTATCCACAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCAGAGCAAGGATCTTAAGGACTCAGGGAACTATCCACAGGCC  400

seq1  TCCTTCCGGGATGCAGCTTTTGTGAGCTCTCACCTGTACTTGCAGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCGGGATGCAGCTTTTGTGAGCTCTCACCTGTACTTGCAGTAGGC  450

seq1  TTTTTAACTATGTAGCTGCCTTGGAATCACCCAAAC-TTTTGTAAGTGAC  499
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTTAACTATGTAGCTGCCTTGGAATCACCCAAACTTTTTGTAAGTGAC  500

seq1  CCCTCTCAATAAGTTCACTAAGCCGGACATGGGCTGAATCG-TTCTTGAG  548
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCTCTCAATAAGTTCACTAAGCCGGACATGGGCTGAATCGTTTCTTGAG  550

seq1  TATGTAACT-GGTC-TTTATGTAAGATAAACTGATGTTTGTTCCTGTCTC  596
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  TATGTAACTGGGTCTTTTATGTAAGATAAACTGATGTTTGTTCCTGTCTC  600

seq1  ACAGGAAAAGTTATACAACATCCAGGGGCTTGCTTTTACAGTTCTAAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAAGTTATACAACATCCAGGGGCTTGCTTTTACAGTTCTAAAAT  650

seq1  CCCTTCTCTTTATCTGGTTTTCCCCTGGCTCCCAGCTATTG-CCTGGGAG  695
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  CCCTTCTCTTTA-CTGGTTTTCCCCTGGCTCCCAGCTATTGCCCTGGGAG  699

seq1  GCAGAATGTGCCCGCAACATATAGGTGCATCTCAGAAGGTAGTTGAGCTG  745
      ||| ||||  ||| | |||||||||||||   ||||||| ||||||||||
seq2  GCA-AATGGTCCCCCCACATATAGGTGCACTCCAGAAGGAAGTTGAGCTG  748

seq1  TGAGGTTCCCAGAAGGCCCCCAGATCTTCCTGTCTTGCAGCCACTCATTT  795
      ||| ||||| | |||||||| ||| ||||  ||||||||||| ||| || 
seq2  TGAAGTTCCAAAAAGGCCCCAAGACCTTCTGGTCTTGCAGCCCCTCTTTG  798

seq1  GCATAGCTCCT-GACCTCACTGAAAATCTCAGAGCCT-GAGGAGTCCCAG  843
      ||||||||||| ||| ||||||||||| ||||| | | |||||||| || 
seq2  GCATAGCTCCTGGACTTCACTGAAAAT-TCAGAACTTGGAGGAGTCTCA-  846

seq1  ACTCAGACTC-GGTGGCTTAATCTGTGTGTCTTCTAACTCGTCTTTCCTC  892
      | ||  |||| || |||| || ||| | || ||  |||||||||||||||
seq2  AATCCAACTCGGGGGGCTAAACCTG-GGGTGTTTCAACTCGTCTTTCCTC  895

seq1  CCCATAGCTATGTGGACTCCCAGCCGGAGGCAGCTCTGCCTGGCATTTCT  942
      ||   | ||| ||||||||||| |||||||||  |||| ||||| ||| |
seq2  CC--AAACTA-GTGGACTCCCA-CCGGAGGCACTTCTG-CTGGC-TTTTT  939

seq1  GTTGGTCTGTGTGCTCTCTGCCGGCTCCTTCTTTTTCCACCTGAATGGAG  992
      ||| || |||||| |||||||||| ||| ||||||||| |||| ||||||
seq2  GTTTGT-TGTGTG-TCTCTGCCGG-TCC-TCTTTTTCC-CCTG-ATGGAG  983

seq1  GAAACTTCTTTCGAAATGGTCTAACTCTCTCTGTCCTGTGTTCA  1036
      ||||||||||||  ||| |||||||||||| || || |||||||
seq2  GAAACTTCTTTC--AATTGTCTAACTCTCTTTGGCC-GTGTTCA  1024

seq1: chr7_53028484_53028910
seq2: B6Ng01-036L12.g_67_493 (reverse)

seq1  CATACATACATACATACATACATACATACATACAATAAAATAAAATCGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATACATACATACATACATACAATAAAATAAAATCGAC  50

seq1  AAAAGAAATAAACAAGGACTCACTTTGTAGCCCAGGCTACCTTCAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATAAACAAGGACTCACTTTGTAGCCCAGGCTACCTTCAAACTT  100

seq1  GTAGCACCCTCCCTGCCTCGGCTTTCTAAGTGTTGGAACTCCAGGTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACCCTCCCTGCCTCGGCTTTCTAAGTGTTGGAACTCCAGGTGTGA  150

seq1  GGCAGTGACCTCCCTAACACCGTTCCTACCTCTCACAGCGGCGGCATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGACCTCCCTAACACCGTTCCTACCTCTCACAGCGGCGGCATTCA  200

seq1  CGGAATCATTTGCCTGGGGATGGCTGCAGACTACTTAATTCCCTCCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATCATTTGCCTGGGGATGGCTGCAGACTACTTAATTCCCTCCATCA  250

seq1  TTGAAACTCCTGCCTGGAAGGCTGTTACTTTCATTTCACAGATGATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCCTGCCTGGAAGGCTGTTACTTTCATTTCACAGATGATACAA  300

seq1  AACTTTAAAAAGACATATCACCTCCTTGTGTCTTGCTTTCGGAATGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAAAGACATATCACCTCCTTGTGTCTTGCTTTCGGAATGCAGC  350

seq1  CACCATGTGTGGGGCTGATCAAGCAGCTTCGGAGAGGGCCGTGCATCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGTGGGGCTGATCAAGCAGCTTCGGAGAGGGCCGTGCATCAGC  400

seq1  CTAGCCTAGGATGGTGCAGAGGAATTC  427
      |||||||||||||||||||||||||||
seq2  CTAGCCTAGGATGGTGCAGAGGAATTC  427