BAC Information

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BAC

Clone NameB6Ng01-038A23
Chromosome16 (Build37)7 (Build37)
Map Location 19,207,676 - 19,208,4259,325,473 - 9,326,583
singlet/doubletsingletsinglet
Overlap geneIgl
Upstream geneEG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2
Downstream geneIgl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A23.bB6Ng01-038A23.g
ACCDH865742DH865743
length1,0721,106
definitionDH865742|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A23, 5' end.DH865743|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,207,676 - 19,208,425)(9,325,473 - 9,326,583)
sequence
gaattccctggtagaagcaagtactcatataaaattcatttttcatgtta
ctccattagagtttgcaaaaggttttcatcaattgtatcatgtcccctct
gccacattgcagcaaacttttgatatttcccgggccttatcccgaactgt
tgtattgcaattcccacaatttcatcaccctccccatgttgggattaacc
ctcgtggattgatccctctaaaaatatggcaaatggatgttacacttgtt
ccagctattgaaaaactaaatatgtccatgtttctattgacacccgttca
ggtatcatgtatgcctcccctatgtctggtgaaaaatctgtaatggtatt
agccattgcttagacgcatgggcagcttggggaaaaccagataatttaaa
aacgaataatggacctgcatatacatcaacatccttccaagtcttctgcg
aaactatgcaagttagtcataccaccgcccttccctataacccacaaggc
caaggtattgtggaaagagcatatcacaccttgaaagaactgttacaaaa
acaaaaagagggaattgcctatggatgagcacccaaagaaaaattatctt
tagctttatttaccttattttttttttttaattttgaatgatcatggtag
ctcggctgcagacaggcatgccatgatttcacctataattcagcatgatg
taaaatggaaggatgtcttaagtggtaaatgacatggcccagatcccatt
atttcagaactaggggagctgtttgtgtttttccacaggataaagaacat
cagatttgggaaccagaaaggctgacacgaaatttccttatcttaaagga
aattggtcagccaagacagagcagctttcctgaagttgctactccagatt
gtcaaactcaatggcacttgactcgaccctgtcaccctggtgacttcacc
tcctggatcaccatgcttctctctttaggagtgggcagaatgtggcctgt
gagcatggtcttctggggttgtcttctgcatctgctattggtcgactaaa
agaagcatgctagcataaagca
gaattcttcagctggggaacggcagtaccagtaagtctcccaaattgatc
cccgtgtttaagggggatatgttttttcttgcccatagacccagtgtggg
tagctcttatccttgttgtttcgttttctgtacaggtcagaaaattctta
tggaacaacaagaaagcatgtcagaagaggacaaagagcgtatgagcaag
agaacaaaaaagggcgaaaaagaaaaaggaaaagaaaagggaggaaaaat
aaaaggaatcagtgatgaagaaaaggaaatagagaagatatttaaatctt
taaaggatttaagtttatcaagctccacttccagtgactcggagcttagc
aaagatgaggaagctgacctagagaaagaggcagcttggtatgagaggga
aagatatgacccggattggtcatatagaaccaagctaatgaaaaggggag
catcagctaataaaagaacaaaaccgaaagtgccaacagttccaccttac
aaccctgattacacaggaaaaaaggtccactagggctgttagaccaggta
cctccttctgcccagaggtgtggaaagaaataggattaacctttccagtt
tttagattgccaaactcaatggcactcgactggacccagtcaccttggag
gacttcacctcctggatcaccattgccttctcatatttttaaggaatggg
ggaaaatgttggcctgggggggggcagtggtcctcctgggttgtgtcttc
tgcatctgatcattgtgtcgactaaaaagagagcatgctctacataaagc
agtggtgtaccaagctctgttggcaattgaagatggcgcatctcccaata
tttggctggcctctttgaaaaactaagagttcgccctaggtcatttggca
atgtagtcaacagatccatggtatccaagacaggcactttcctcatgcac
agacaacctaagacacgggcctagaggcgataggctaccctatgacaggt
aaaggttgtgacactagaagatcatcttaaacaggagtctatggccgatg
gactgatttacccagactagttcagctctctaaataataaaagggggaag
atgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19207676_19208425
seq2: B6Ng01-038A23.b_388_1117

seq1  ATGTTATTAGCCATTGCTTAGACACATGGGCAGCTTGGGGAAAACCAGCT  50
      ||| ||||||||||||||||||| |||||||||||||||||||||||| |
seq2  ATGGTATTAGCCATTGCTTAGACGCATGGGCAGCTTGGGGAAAACCAGAT  50

seq1  AATTTAAAAACTGATAATGGACCTGCATATACATCAACATCCTTCCAAGT  100
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAACGAATAATGGACCTGCATATACATCAACATCCTTCCAAGT  100

seq1  CTTCTGCGAAACTATGCAAGTTAGTCATACC-CTGGCCTTCCCTATAACC  149
      ||||||||||||||||||||||||||||||| | | ||||||||||||||
seq2  CTTCTGCGAAACTATGCAAGTTAGTCATACCACCGCCCTTCCCTATAACC  150

seq1  CACAAGGCCAAGGTATTGCGGAAAGAGCACATCACACCTTGAAAGAACTG  199
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  CACAAGGCCAAGGTATTGTGGAAAGAGCATATCACACCTTGAAAGAACTG  200

seq1  TTACAAAAACAAAAACAAAAAAAGGTATTGCCTACGGACGAGCACCCAAA  249
      |||||||||||     |||| | || |||||||| ||| |||||||||||
seq2  TTACAAAAACA-----AAAAGAGGGAATTGCCTATGGATGAGCACCCAAA  245

seq1  GAACAATTATCTTTAGCTTTATTTAACCTTA----AATTTTTAAATTTTG  295
      ||| |||||||||||||||||||| ||||||      ||||| |||||||
seq2  GAAAAATTATCTTTAGCTTTATTT-ACCTTATTTTTTTTTTTTAATTTTG  294

seq1  GGTGATCATGGTCGCTCGGCTGCAGACAGGCTTGCCATGACCTCACCTGT  345
        |||||||||| |||||||||||||||||| ||||||||  |||||| |
seq2  AATGATCATGGTAGCTCGGCTGCAGACAGGCATGCCATGATTTCACCTAT  344

seq1  AATTCAACATGATGTAAAATGGAACGATGTCTTAACTGGTAAATGGTATG  395
      |||||| ||||||||||||||||| |||||||||| |||||||||  |||
seq2  AATTCAGCATGATGTAAAATGGAAGGATGTCTTAAGTGGTAAATGACATG  394

seq1  GCCCAGATCCCGTTATTTCGAGATCTAGGGGAGCTGTTTGTGTTTTTCCA  445
      ||||||||||| ||||||| ||| ||||||||||||||||||||||||||
seq2  GCCCAGATCCCATTATTTC-AGAACTAGGGGAGCTGTTTGTGTTTTTCCA  443

seq1  CAGGATAAAGAACATCCGATTTGGGTACCAGAAAGGCTGACATGAAAATT  495
      |||||||||||||||| |||||||| |||||||||||||||| |||| ||
seq2  CAGGATAAAGAACATCAGATTTGGGAACCAGAAAGGCTGACACGAAATTT  493

seq1  GCTTATCTTAAAGGAAATTGGTCAGCTAAGGTAGAGCAGCTGTCCAGAAA  545
       ||||||||||||||||||||||||| |||  ||||||||| ||| | ||
seq2  CCTTATCTTAAAGGAAATTGGTCAGCCAAGACAGAGCAGCTTTCCTG-AA  542

seq1  GTTGCTCCTCCAGATTGCCAAACTCAATGGCACTCAACTCTACCCTGTCA  595
      |||||| |||||||||| ||||||||||||||||  |||| |||||||||
seq2  GTTGCTACTCCAGATTGTCAAACTCAATGGCACTTGACTCGACCCTGTCA  592

seq1  CCCTGGGAGACTTCACCTCCTGGATCACCAATGCCTTCTCCTTTTTTAAG  645
      |||| || ||||||||||||||||||||| ||| ||||||   | || ||
seq2  CCCT-GGTGACTTCACCTCCTGGATCACC-ATG-CTTCTC---TCTTTAG  636

seq1  CAGTGGGAAGAAATGTTGGCCTGGGGAGCAGTGGTCCTCCTGGGGTGTGT  695
       |||||| || |||| |||||| | ||||| |||| || ||||||| |||
seq2  GAGTGGGCAG-AATG-TGGCCT-GTGAGCA-TGGT-CTTCTGGGGT-TGT  680

seq1  CTTCTGCATCTGGCTATTGTGTCCACTAAAAAGAGAGCATGCTCAGCATA  745
      ||||||||||| ||||||| ||| ||| |||||| |||||||| ||||||
seq2  CTTCTGCATCT-GCTATTG-GTCGACT-AAAAGA-AGCATGCT-AGCATA  725

seq1  AAGCA  750
      |||||
seq2  AAGCA  730

seq1: chr7_9325473_9326583
seq2: B6Ng01-038A23.g_67_1172 (reverse)

seq1  CCACATC-TCCCCCTTTT-TTGTTTAGTGATGCTGGACTAGGTCTGGGTA  48
      ||||||| |||||||||| || ||||| || |||| |||| |||||||||
seq2  CCACATCTTCCCCCTTTTATTATTTAGAGA-GCTGAACTA-GTCTGGGTA  48

seq1  AATCTGTCCATCGGCCAT-GGCTCCTGTTTTAAGTTGATCTTCTAGTGTC  97
      |||| ||||||||||||| | |||||| |||||| |||||||||||||||
seq2  AATCAGTCCATCGGCCATAGACTCCTG-TTTAAGATGATCTTCTAGTGTC  97

seq1  ACAGCC-TTACCTGTCATAGGGTAGCCCTATCGCCTCTAGGCCCCGTGTC  146
      ||| || |||||||||||||||||| ||||||||||||||| ||||||||
seq2  ACAACCTTTACCTGTCATAGGGTAG-CCTATCGCCTCTAGG-CCCGTGTC  145

seq1  TTAGGTTGGTCTGTGCATGAGGAAAGTTGCCTGTCTTTGGATACCATGGA  196
      ||||||| |||||||||||||||||| |||||||| ||||||||||||||
seq2  TTAGGTT-GTCTGTGCATGAGGAAAG-TGCCTGTC-TTGGATACCATGGA  192

seq1  TCTGTTTGACTACAATTGCCAAATGACCTAGGGCGAACTCTTAGTTTTTC  246
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTG-TTGACTAC-ATTGCCAAATGACCTAGGGCGAACTCTTAGTTTTTC  240

seq1  AAAGAGGCCAGCCAAATATTGGGAGATGCGCCATCTTCAATTGCCAACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCAGCCAAATATTGGGAGATGCGCCATCTTCAATTGCCAACAG  290

seq1  AGCTTGGTACACCACTGCTTTATGTAGAGCATGCTCTCTTTTTAGTCGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTACACCACTGCTTTATGTAGAGCATGCTCTCTTTTTAGTCGAC  340

seq1  ACAATGATCAGATGCAGAAGACACAACCCAGGAGGACCACTGCCCCCCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATCAGATGCAGAAGACACAACCCAGGAGGACCACTGCCCCCCCC  390

seq1  CAGGCCAACATTTTCCCCCATTCCTT-AAAATATGAGAAGGCAATGGTGA  445
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGGCCAACATTTTCCCCCATTCCTTAAAAATATGAGAAGGCAATGGTGA  440

seq1  TCCAGGAGGTGAAGTCCTCCAAGGTGACTGGGTCCAGTCGAGTGCCATTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGGTGAAGTCCTCCAAGGTGACTGGGTCCAGTCGAGTGCCATTG  490

seq1  AGTTTGGCAATCTAAAAACTGGAAAGGTTAATCCTATTTCTTTCCACACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCAATCTAAAAACTGGAAAGGTTAATCCTATTTCTTTCCACACC  540

seq1  TCTGGGCAGAAGGAGGTACCTGGTCTAACAGCCCTAGTGGACCTTTTTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAGAAGGAGGTACCTGGTCTAACAGCCCTAGTGGACCTTTTTTC  590

seq1  CTGTGTAATCAGGGTTGTAAGGTGGAACTGTTGGCACTTTCGGTTTTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATCAGGGTTGTAAGGTGGAACTGTTGGCACTTTCGGTTTTGTT  640

seq1  CTTTTATTAGCTGATGCTCCCCTTTTCATTAGCTTGGTTCTATATGACCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTAGCTGATGCTCCCCTTTTCATTAGCTTGGTTCTATATGACCA  690

seq1  ATCCGGGTCATATCTTTCCCTCTCATACCAAGCTGCCTCTTTCTCTAGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGGTCATATCTTTCCCTCTCATACCAAGCTGCCTCTTTCTCTAGGT  740

seq1  CAGCTTCCTCATCTTTGCTAAGCTCCGAGTCACTGGAAGTGGAGCTTGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCTCATCTTTGCTAAGCTCCGAGTCACTGGAAGTGGAGCTTGAT  790

seq1  AAACTTAAATCCTTTAAAGATTTAAATATCTTCTCTATTTCCTTTTCTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAATCCTTTAAAGATTTAAATATCTTCTCTATTTCCTTTTCTTC  840

seq1  ATCACTGATTCCTTTTATTTTTCCTCCCTTTTCTTTTCCTTTTTCTTTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGATTCCTTTTATTTTTCCTCCCTTTTCTTTTCCTTTTTCTTTTT  890

seq1  CGCCCTTTTTTGTTCTCTTGCTCATACGCTCTTTGTCCTCTTCTGACATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTTTTTTGTTCTCTTGCTCATACGCTCTTTGTCCTCTTCTGACATG  940

seq1  CTTTCTTGTTGTTCCATAAGAATTTTCTGACCTGTACAGAAAACGAAACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTTGTTCCATAAGAATTTTCTGACCTGTACAGAAAACGAAACA  990

seq1  ACAAGGATAAGAGCTACCCACACTGGGTCTATGGGCAAGAAAAAACATAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGATAAGAGCTACCCACACTGGGTCTATGGGCAAGAAAAAACATAT  1040

seq1  CCCCCTTAAACACGGGGATCAATTTGGGAGACTTACTGGTACTGCCGTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTAAACACGGGGATCAATTTGGGAGACTTACTGGTACTGCCGTTC  1090

seq1  CCCAGCTGAAGAATTC  1111
      ||||||||||||||||
seq2  CCCAGCTGAAGAATTC  1106