BAC Information

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BAC

Clone NameB6Ng01-038H03
Chromosome7 (Build37)
Map Location 134,117,670 - 134,271,835
singlet/doubletdoublet
Overlap geneD830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt
Upstream geneGsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2
Downstream geneSpn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038H03.bB6Ng01-038H03.g
ACCDH866002DH866003
length1,220734
definitionDH866002|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H03, 5' end.DH866003|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,117,670 - 134,118,911)(134,271,246 - 134,271,835)
sequence
gaattctgctggacatggtggtgagcacctttaatcctagtactggggag
gcagaggcaggtttatctttgtgatgtcaaggccaggctggtctacatgg
caaattccagggcaaccatgctacatagggagacactacctcaaacaaac
aaaaacaaacaaacaaacaaccccctgaattcttatagggctgagtctct
accgtgcattctgtccccccaatcatctaactcctaacacatggaacggc
acacaggggaagctggaaatgttggaattgaataacctcatacaaacctt
ttcacgaggagatggcagaaggtgtgccttggttcgggttcgatttttgt
cagagctggagatgacagaagacaacagaataggctgagaatcaggaact
ggagcatcaggagggaatagaatagaacttcatggttgaaaacttccccc
taccctgctgggatgctgtcaacccttgctctctccccacaggctcctgg
gagaaggacagagcctcactcaccgggtgtcagtgcctcgggtcttagtg
aagaacactggaattagaggccccagttaaaggaacaactttccccatgt
ttagaagagttgtggctagagcaggtagggacaagggggttcctgggtag
tgacaatgaatgagttagaagttaaggggcactgtgcctaggatgggcaa
ggaggcagaagattcctggggagagcagctatggttgggagtgagtcagg
gactggtctctagatgaagaaggagagcgttcaccatgtctagatatctg
agtcccttggtcttttgtgttcttttccttattgggcagaggactcaaac
gggagcgagcaataaacagtgcttcgtctgtaagttctgtgctgattcgg
gtcaggaattcttcagagcaggataatttctgaaaggaagttagaattca
gtctgcaaattcccattggtctggtgtcttccaggctgcaggctctggct
tgggaaactggtatagaaggccctagactggaagctgtctggggggcctt
agggttaggctcaaggctaaggctcaggcttatggctaagacagggctcc
tgctgctcttccatttcttcacttttcatgtcggtactgtgctcacttag
ggaggcggcactggagatgactggatgtcattgtcccactcctgggcgat
gtgggaggcatctcctggaa
gaattcaagagtagctaggactatgtagagagagagggggagaccctgtc
tcaaaatagacaatttaattaattaaaaaaattgaaagggccaaggctgg
agagatggcacagtggttaacagcactggctataattccagagaacccag
ttcgattcccagcatccacgtgacaattcacaactgtgacttcagtccca
ggagatctgacaccctcttctggcctccttgggcaccatgcgtgcaggtg
acacacagaggtacattcaggtcaaatacccatatacatttttttttatt
ttaaaaataaatgctgggctggtgagatggcttagtgggtaagagcaccc
gactgctcttccgaaggtccagagttcaaatcccagcaaccacatggtgg
ctcacaaccatccgtaacgagatctgactccctcttctggtgtgtctgaa
gacagctacaatgtacttacatataataataaataaatatttaaaataaa
caaataaatgtttacatttttttaaataaggaagaggaggcaaagggaag
gaagggagaaaaggtatttctgtttatgtaacaatttactgctggcattt
ggggcatttgacgacttaacctccttccatttgtactcttgttattctgc
tagggtcagaacatgctctgctttctgccagcttgtaggagagaagagaa
ggatgcctgatggcttgtatgatccaaatctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134117670_134118911
seq2: B6Ng01-038H03.b_45_1264

seq1  GAATTCTGCTGGACATGGTGGTGAGCACCTTTAATCCTAGTACTGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGGACATGGTGGTGAGCACCTTTAATCCTAGTACTGGGGAG  50

seq1  GCAGAGGCAGGTTTATCTTTGTGATGTCAAGGCCAGGCTGGTCTACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGTTTATCTTTGTGATGTCAAGGCCAGGCTGGTCTACATGG  100

seq1  CAAATTCCAGGGCAACCATGCTACATAGGGAGACACTACCTCAAACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCAGGGCAACCATGCTACATAGGGAGACACTACCTCAAACAAAC  150

seq1  AAAAACAAACAAACAAACAACCCCCTGAATTCTTATAGGGCTGAGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAACAAACAACCCCCTGAATTCTTATAGGGCTGAGTCTCT  200

seq1  ACCGTGCATTCTGTCCCCCCAATCATCTAACTCCTAACACATGGAACGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGCATTCTGTCCCCCCAATCATCTAACTCCTAACACATGGAACGGC  250

seq1  ACACAGGGGAAGCTGGAAATGTTGGAATTGAATAACCTCATACAAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGGAAGCTGGAAATGTTGGAATTGAATAACCTCATACAAACCTT  300

seq1  TTCACGAGGAGATGGCAGAAGGTGTGCCTTGGTTCGGGTTCGATTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGAGGAGATGGCAGAAGGTGTGCCTTGGTTCGGGTTCGATTTTTGT  350

seq1  CAGAGCTGGAGATGACAGAAGACAACAGAATAGGCTGAGAATCAGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGAGATGACAGAAGACAACAGAATAGGCTGAGAATCAGGAACT  400

seq1  GGAGCATCAGGAGGGAATAGAATAGAACTTCATGGTTGAAAACTTCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCAGGAGGGAATAGAATAGAACTTCATGGTTGAAAACTTCCCCC  450

seq1  TACCCTGCTGGGATGCTGTCAACCCTTGCTCTCTCCCCACAGGCTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGCTGGGATGCTGTCAACCCTTGCTCTCTCCCCACAGGCTCCTGG  500

seq1  GAGAAGGACAGAGCCTCACTCACCGGGTGTCAGTGCCTCGGGTCTTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGACAGAGCCTCACTCACCGGGTGTCAGTGCCTCGGGTCTTAGTG  550

seq1  AAGAACACTGGAATTAGAGGCCCCAGTTAAAGGAACAACTTTCCCCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTGGAATTAGAGGCCCCAGTTAAAGGAACAACTTTCCCCATGT  600

seq1  TTAGAAGAGTTGTGGCTAGAGCAGGTAGGGACAAGGGGGTTCCTGGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGTTGTGGCTAGAGCAGGTAGGGACAAGGGGGTTCCTGGGTAG  650

seq1  TGACAATGAATGAGTTAGAAGTTAAGGGGCACTGTGCCTAGGATGGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGAATGAGTTAGAAGTTAAGGGGCACTGTGCCTAGGATGGGCAA  700

seq1  GGAGGCAGAAGATTCCTGGGGAGAGCAGCTATGGTTGGGAGTGAGTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAAGATTCCTGGGGAGAGCAGCTATGGTTGGGAGTGAGTCAGG  750

seq1  GACTGGTCTCTAGATGAAGAAGGAGAGCGTTCACCATGTCTAGATATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTCTCTAGATGAAGAAGGAGAGCGTTCACCATGTCTAGATATCTG  800

seq1  AGTCCCTTGGTCTTTTGTGTTCTTTTCCTTATTGGGCAGAGGACTCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTGGTCTTTTGTGTTCTTTTCCTTATTGGGCAGAGGACTCAAAC  850

seq1  GGGAGCGAGCAATAAACAGTGCTTCGTCTGTAAGTTCTGTGCTGATTCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCGAGCAATAAACAGTGCTTCGTCTGTAAGTTCTGTGCTGATTCGG  900

seq1  GTCAGGAATTCTTCAGAGCAGGATAATTTCTGAAAAGGAAGTTAGAATTC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCAGGAATTCTTCAGAGCAGGATAATTTCTG-AAAGGAAGTTAGAATTC  949

seq1  AGTCTGCAAATTCCCATTGGTCTGGTGTCTTCCAGGCTGCAGGCTCTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAAATTCCCATTGGTCTGGTGTCTTCCAGGCTGCAGGCTCTGGC  999

seq1  TTGGGAAACTGGTATTAGAAGGCCCTAGACCTGGAAAGCTGTCTGTGGGG  1050
      |||||||||||||| |||||||||||||| |||| |||||||||| ||||
seq2  TTGGGAAACTGGTA-TAGAAGGCCCTAGA-CTGG-AAGCTGTCTGGGGGG  1046

seq1  CCTTAGGGTTAAGGCTCAAGGCTAAGGCTCAAGGCTCATGGCTCAGACAG  1100
      |||||||||| ||||||||||||||||||| ||||| |||||| ||||||
seq2  CCTTAGGGTT-AGGCTCAAGGCTAAGGCTC-AGGCTTATGGCTAAGACAG  1094

seq1  GGCTCCCTGCCTGGCTCTTCCCATCTCCTTCACTTTTCCATTGTCGTTTA  1150
      |||| |||||   |||||| |||| | |||||||||||   ||||| |  
seq2  GGCT-CCTGC--TGCTCTT-CCAT-TTCTTCACTTTTC--ATGTCGGT--  1135

seq1  CCTGCCCTCCACCTAAGGAGGCGGCAGCTTGAGATGACCTGATGTCCTTT  1200
       |||  || ||| || |||||||||| || ||||||||  |||||| || 
seq2  ACTGTGCT-CACTTAGGGAGGCGGCA-CTGGAGATGACTGGATGTCATTG  1183

seq1  TTGTCCCCACTCCTGGCAGATGTGGATGCCATCCTCCTGGAA  1242
      |    |||||||||||  |||||||  | ||| |||||||||
seq2  T----CCCACTCCTGGGCGATGTGGGAGGCAT-CTCCTGGAA  1220

seq1: chr7_134271246_134271835
seq2: B6Ng01-038H03.g_69_658 (reverse)

seq1  AGTAAATTGTTACATAAACAGAAATACCTTTTCTCCCTTCCTTCCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTGTTACATAAACAGAAATACCTTTTCTCCCTTCCTTCCCTTTG  50

seq1  CCTCCTCTTCCTTATTTAAAAAAATGTAAACATTTATTTGTTTATTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTCCTTATTTAAAAAAATGTAAACATTTATTTGTTTATTTTAA  100

seq1  ATATTTATTTATTATTATATGTAAGTACATTGTAGCTGTCTTCAGACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTATTATTATATGTAAGTACATTGTAGCTGTCTTCAGACACA  150

seq1  CCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTG  200

seq1  GTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTT  250

seq1  ACCCACTAAGCCATCTCACCAGCCCAGCATTTATTTTTAAAATAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTAAGCCATCTCACCAGCCCAGCATTTATTTTTAAAATAAAAAAA  300

seq1  AATGTATATGGGTATTTGACCTGAATGTACCTCTGTGTGTCACCTGCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATGGGTATTTGACCTGAATGTACCTCTGTGTGTCACCTGCACG  350

seq1  CATGGTGCCCAAGGAGGCCAGAAGAGGGTGTCAGATCTCCTGGGACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGCCCAAGGAGGCCAGAAGAGGGTGTCAGATCTCCTGGGACTGAA  400

seq1  GTCACAGTTGTGAATTGTCACGTGGATGCTGGGAATCGAACTGGGTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTTGTGAATTGTCACGTGGATGCTGGGAATCGAACTGGGTTCTC  450

seq1  TGGAATTATAGCCAGTGCTGTTAACCACTGTGCCATCTCTCCAGCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATAGCCAGTGCTGTTAACCACTGTGCCATCTCTCCAGCCTTGG  500

seq1  CCCTTTCAATTTTTTTAATTAATTAAATTGTCTATTTTGAGACAGGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCAATTTTTTTAATTAATTAAATTGTCTATTTTGAGACAGGGTCT  550

seq1  CCCCCTCTCTCTCTACATAGTCCTAGCTACTCTTGAATTC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTCTCTCTACATAGTCCTAGCTACTCTTGAATTC  590