BAC Information

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BAC

Clone NameB6Ng01-038I17
Chromosome7 (Build37)2 (Build37)
Map Location 120,023,173 - 120,024,194143,989,349 - 143,989,740
singlet/doubletsingletsinglet
Overlap geneTead1
Upstream geneLOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl, Parva, LOC627808
Downstream gene4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038I17.bB6Ng01-038I17.g
ACCDH866076DH866077
length997386
definitionDH866076|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I17, 5' end.DH866077|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,023,173 - 120,024,194)(143,989,349 - 143,989,740)
sequence
gaattccaggacagccaaggttacacagaaaaacggggtctcgaaaaact
gtttcaaaaaaacaaccaacaaacttggtaccataaaacacaaacagtct
gtttcttctcgctagctcggtcattttctcccaggaggcaaataccatta
ttcatttggtatgggtgatgaaattaagtcttagggaaactaaattagtt
gcttaattctacaattatgggaaatgaagcccttggtgactttaggaacc
tgggaaacttggctctgcgcctagtttctgttctaccaaggagactgtgt
ggtaccggttattgcttttacacctggagaaattgcaaacaggcattttg
gcgtttgttgggtttttttgtttggggtttttgagtgaggagatttctta
tattagcggttggtttgaatgtgaattggtgtacaaggtgcgtctacaaa
ccttatatgcttttgcttccgaaattgccccttttccccagtggattatc
tgcttcccccatgggacctgttgggccatgacttgcctgataatgtctcc
taataaggaggcctaaattgcagatgtatggcttgcggtgtgcaaacttt
gaatgttagtctgtgagcctagacacttctattcagccttacaggattaa
gatcgagcactcccgtgaatatgatagaaaacgtgactcgttcagcacca
ctgttgggagcccttaacctttacgaggaggaatcggttaggacagagga
gaggaggcagttcaatcatgctgaggtttggagtctcactggcttctgta
atgactttggtgagggtgagctgtgctcttagcatctctatcctcgggta
ccagcatgtgcgtgccgggacgatgcttcaaaggttaatgctcccttgaa
acacctttcattgccttctttcagcaggtctcgtctagtgtgattcagta
attcacagagactccatgccacttgctctccgttgcctctttctcaa
atgtggccaaccctgctgcaacctttgagttgtaataacagacccattgc
actaaggtgtctccacgacaggctgagggagcaggtctcaagggcagtat
gtgatgagggaggtgtcccaagaagaagtagagaagaagacaggagagag
agaggggccattgaagagtgatttatggagctggtcctgctggggtaggg
tggaggagagaagatgctgcaaagaagaaacagacagacgggtagcacac
tagagctgcccctagcaaccagaagggagttggatgctcagctgccaccc
ctaagccagaagccctggtctatctggtatccagggtctcaggctagagt
catttgggaaagctttgtgggggtgtgtgtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_120023173_120024194
seq2: B6Ng01-038I17.b_30_1026

seq1  GAATTCCAGGACAGCCAGGGTTACACAGAAAAAGGGGGAAAAAAAAACCT  50
      ||||||||||||||||| ||||||||||||||| ||||     |||| ||
seq2  GAATTCCAGGACAGCCAAGGTTACACAGAAAAACGGGGTCTCGAAAAACT  50

seq1  GTTTCGAAAAAAAAAACAAACAAAATTGGT---ATTTATATCTATCAGTC  97
      ||||| ||||||| ||| |||||| |||||   ||  |   | | |||||
seq2  GTTTC-AAAAAAACAACCAACAAACTTGGTACCATAAAACACAAACAGTC  99

seq1  TGTCTATCTATATATGCATGCATGCTCAAATTTTAAAAGGTGTATATTAG  147
      ||| | |   | |  ||  ||  | |||  || |   ||| |   | || 
seq2  TGTTTCT---TCT-CGCTAGCTCGGTCATTTTCTCCCAGGAGGCAAATAC  145

seq1  TATATATAATTTGGTTTTTGAGGCTACTGGAAGGTAAGT-----AAAAAC  192
       ||   | ||||||| |    || |  | |||  |||||       ||||
seq2  CATTATTCATTTGGTAT----GGGTGAT-GAAATTAAGTCTTAGGGAAAC  190

seq1  TGTCTGTAGTACAGAAAACAGACATAAACTAT-GAAAAGCAAAAGCT--G  239
      |   | ||||     ||    ||   || ||| | |||  ||   ||  |
seq2  TAAAT-TAGTTGCTTAATTCTAC---AATTATGGGAAATGAAGCCCTTGG  236

seq1  TGTCTTAAGCCTCAATGG-TCCTTGAATCACGTATGAC-AGTCATTGTTA  287
      || ||| ||   |   ||   ||||  ||   |  | | |||   |||| 
seq2  TGACTTTAGGAACCTGGGAAACTTGGCTC---TGCGCCTAGTTTCTGTTC  283

seq1  AAGATAGGAAA-----TGGGATTGTTTATCCAAGTTAATAAGAAAGCATA  332
       |   |||| |     ||| |  | |||      ||  |   | | |   
seq2  TACCAAGGAGACTGTGTGGTACCGGTTA------TTGCTTTTACACCTGG  327

seq1  AGATAATTCGAAGAAACCACTTTCACTACTTTTAAATTAAACAGTAGTGG  382
      ||| ||||  ||  |  || |||  |   | ||   ||     ||   ||
seq2  AGA-AATTGCAAACAGGCATTTTGGCGTTTGTTGGGTTTTTTTGTTTGGG  376

seq1  GTTTTAACGATGATGAGATTTCTTATAATTAGCGTTTTGTTTGAATGTGA  432
      |||||   | ||| |||||||||||| ||||||| || ||||||||||||
seq2  GTTTTTGAG-TGAGGAGATTTCTTAT-ATTAGCGGTTGGTTTGAATGTGA  424

seq1  ATTGGTGTAGAAGGTGCTTAGACAGACATTTTTTGGTTTTGCTTCCAAAA  482
      ||||||||| ||||||| |  ||| || || | || |||||||||| |||
seq2  ATTGGTGTACAAGGTGCGTCTACAAACCTTATATGCTTTTGCTTCCGAAA  474

seq1  TTGCCCCTTTTCCCCAGTGGATTATCTGCTTCCCCCAAGGGACCATTTGG  532
      ||||||||||||||||||||||||||||||||||||| ||||||  ||||
seq2  TTGCCCCTTTTCCCCAGTGGATTATCTGCTTCCCCCATGGGACCTGTTGG  524

seq1  GCCATGACTTGCCTGATAATGTCTCCTAATAAGGAGGCCTAGATTGCAGA  582
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCATGACTTGCCTGATAATGTCTCCTAATAAGGAGGCCTAAATTGCAGA  574

seq1  TGTATGGCTTGTGGTGTGCAAACTTTGAATGTTAGTCTGTGAGCCTAGAC  632
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCTTGCGGTGTGCAAACTTTGAATGTTAGTCTGTGAGCCTAGAC  624

seq1  ACTTCTATTCAGCCTTACAGGATTAAGATCGAGCACTCCCGTGAATATGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATTCAGCCTTACAGGATTAAGATCGAGCACTCCCGTGAATATGA  674

seq1  TAGAAAACGTGACTCGTTCAGCACCACTGTTGGGAGCCCTTAACCTTTAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACGTGACTCGTTCAGCACCACTGTTGGGAGCCCTTAACCTTTAC  724

seq1  GAGGAGGAATCGGTTAGGACAGAGGAGAGGAGGCAGTTTCAATCAGGCTG  782
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GAGGAGGAATCGGTTAGGACAGAGGAGAGGAGGCAG-TTCAATCATGCTG  773

seq1  AGGTTTGGAGTCTCACTGGCTTCTGTAATGAC-TTGGTGAGGGTGAGCTG  831
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGTTTGGAGTCTCACTGGCTTCTGTAATGACTTTGGTGAGGGTGAGCTG  823

seq1  TGCTCTTAGCATCTCTATCCTCGGGTACCAGCAGGTGCGTGCCGTGGACG  881
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  TGCTCTTAGCATCTCTATCCTCGGGTACCAGCATGTGCGTGCCG-GGACG  872

seq1  ATGCTTCAGAAGGTTTAATGCTCCCCTTGAAACAGCCTTTACATTAGCCA  931
      |||||||| |||| |||||||| ||||||||||| ||||| |||| ||| 
seq2  ATGCTTCA-AAGG-TTAATGCT-CCCTTGAAACA-CCTTT-CATT-GCC-  915

seq1  TTCATTCAGCAGGTTCTCGTCTTAGTGTGAATTCAGTAAATTACAACAGA  981
      ||| ||||||||| ||||||| ||||||| ||||||||| |    |||||
seq2  TTCTTTCAGCAGG-TCTCGTC-TAGTGTG-ATTCAGTAATT---CACAGA  959

seq1  GACCCCATGCCCAACTGCTCTCCCGTTTGCCTCTTTCTCAA  1022
      ||| ||||| |||  ||||||||   |||||||||||||||
seq2  GACTCCATG-CCACTTGCTCTCC--GTTGCCTCTTTCTCAA  997

seq1: chr2_143989349_143989740
seq2: B6Ng01-038I17.g_65_456

seq1  GAATTCATGTGGTAAACCAGACAGCAGCCTATGAGTAAGAATAACAGACC  50
      ||||||||||||  ||||   | ||| ||| |||||   |||||||||||
seq2  GAATTCATGTGGCCAACCCTGCTGCAACCTTTGAGTTGTAATAACAGACC  50

seq1  CATCACACTAAGGTGTCTCCACGACAGGCTGAGGGAGCAGGTCTCAAGGG  100
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACTAAGGTGTCTCCACGACAGGCTGAGGGAGCAGGTCTCAAGGG  100

seq1  CAGTATGTGATGAGGGAGGTGTCCCAAGAAGAAGTAGAGAAGAAGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTGATGAGGGAGGTGTCCCAAGAAGAAGTAGAGAAGAAGACAGG  150

seq1  AGAGAGAGAGGGGCCATTGAAGAGTGATTTATGGAGCTGGTCCTGCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGGGGCCATTGAAGAGTGATTTATGGAGCTGGTCCTGCTGGG  200

seq1  GTAGGGTGGAGGAGAGAAGATGCTGCAAAGAAGAAACAGACAGACGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTGGAGGAGAGAAGATGCTGCAAAGAAGAAACAGACAGACGGGTA  250

seq1  GCACACTAGAGCTGCCCCTAGCAACCAGAAGGGAGTTGGATGCTCAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTAGAGCTGCCCCTAGCAACCAGAAGGGAGTTGGATGCTCAGCTG  300

seq1  CCACCCCTAAGCCAGAAGCCCTGGTCTATCTGGTATCCAGGGTCTCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTAAGCCAGAAGCCCTGGTCTATCTGGTATCCAGGGTCTCAGGC  350

seq1  TAGAGTCATTTGGGAAAGCTTTGTGGGGGTGTGTGTGGGGGG  392
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCATTTGGGAAAGCTTTGTGGGGGTGTGTGTGGGGGG  392