BAC Information

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BAC

Clone NameB6Ng01-038K08
Chromosome2 (Build37)7 (Build37)
Map Location 80,272,086 - 80,272,178109,954,423 - 109,955,542
singlet/doubletsingletsinglet
Overlap geneFrzb
Upstream geneNeurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038K08.bB6Ng01-038K08.g
ACCDH866144DH866145
length1,0031,105
definitionDH866144|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K08, 5' end.DH866145|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,272,086 - 80,272,178)(109,954,423 - 109,955,542)
sequence
gaattcttgattttgaagatatatgctataaatgcaagggcatccacatt
cataaaagaaactttattgaagctaaaagcacacattgcatctcacacaa
taattgtggaggacttcaaaaccctgaacttgttgttaatggacagatca
tggagacagaaactaaacagagaaacagtgaaactaacagaagtttggat
caaatggatttaaaagatatctatgtaacatttcatccaaaaacaaaaaa
caaaaaacaaaaaacaaaaaaacaaaacaaacaaacaaacaaacaaactc
cccaaagctttcttctcagcacctcatggtaccttttccaaaattgaaca
tataatcagttacaaatcagatctcaacagacagaagaagattgaaataa
tcccatgtctcttatcagatcaacatggattaaggctggtctacgttttg
tttttgtttttgtttttgtttttttgagacagggtttctctgtatagccc
tggatgtcctggaactcactttgtagaccaggctggtctcgaactcagaa
atccgcctgcctctgcatcgagagtgctgggattaaggtgtgcaccacca
ctcttggctaaggctggtcttcaatagtaacaaaaacaacagaaatccca
catacacgtggaagctgaacaatgctctactcaatgataacttggtcaag
gaagtaataaagaaagaaattaaaggcattttagaatttaatgaaaatga
aggtacagcatacccaaacttatgggacacaatgaaagcagtgctaaaag
gaaaactcatagctctgaatgcctgagagaatatatactagcagcttgac
agcacaacagaaagctctagaacaaaaagaagcaaatacacccaaaagga
gtagatgacaggaaataatcaaactcaggactgaaatcaccaaatagaaa
caaaagaactacacaaagaatcaacatcaccaggagctggtttttgagaa
atc
gaattccatttatacaggagcaattctgggttaatatttttgagatgggt
gagtggcctcatcctaacaactggatatgatctcattaaaatatttctaa
gttcattttattataattttgacaacccaaagaaaactaatgtactatgt
aaatatttttattttatttttgagaactttatgcatgtttataatgaaat
attgtatctaccatgaccctttccaactttattcatgttcctcatcacac
cactcccaatttcatgtatctttctaatcatgatagtattgctcatatgt
ttatgggtacctcaaagtggaattcagccttctgagataaaaaaaaaaaa
ttaatgttttcatgaccttatattactttaatgatccttccaggaaagat
ttttctcctgtagtcatagtggcacaagtgttatgaaataagtacccact
ttctgatcagatttgaaccctgttccacaagagacagtttcatacttgat
attgaaatcctgctcaaagctcatggctagggagctcacatgcccaaagg
gagaatctactgttgttattttgctcaataatcatggtgtcaaattgcct
tctaaatattcatgcttatactcacagatctaggctgctctcagcctttg
tcagaaaatcttctttatgtcctgggcaatcaacaaggagatacataagt
ggttaaagtactaaaagtagtgaccgagtgttcagctctaatcaggatag
ctgtattaccctcaccttcaccccaaggcttacaaaaattatttatatgt
aaatgatctttgcaaaatcatgagaacagaattattaagtagtgaacaca
aagctagtacaatggaaaaaaattatacattaaagtttagtaagacatag
ctatttttaaagaaggtttataattaaaattttcctagaaactgggagaa
atttatgatattttgtcattctccatagaaatacacatgatatgatttgt
taaatattatttatttttattttacttctatatatgtgtgtattttatag
gtatttttaaatatcattgcacatgactgtataatgagtaggccctacaa
tatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80272086_80272178
seq2: B6Ng01-038K08.b_525_617 (reverse)

seq1  GATGCAGAGGCAGGCAGATTTCTGAGTTGGAGGCCAGTCTGGTCTACAAA  50
      ||||||||||||||| |||||||||||| ||| |||| ||||||||||||
seq2  GATGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAA  50

seq1  GTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCT  93
      ||||||||||||||| ||| ||||| |||||||||||||||||
seq2  GTGAGTTCCAGGACATCCAGGGCTATACAGAGAAACCCTGTCT  93

seq1: chr7_109954423_109955542
seq2: B6Ng01-038K08.g_70_1174 (reverse)

seq1  ATATATTTGTGTGAGGGCATACTCATGTATACAGTCATGTGCAATGAATA  50
      ||||||   ||| ||||| ||||||| ||||||||||||||||||| |||
seq2  ATATAT---TGT-AGGGCCTACTCAT-TATACAGTCATGTGCAATG-ATA  44

seq1  TTTTAAAAAATACCTAATAAAATACACACATATATAGAAGTAAAAATTAA  100
      |||  |||||||||| |||||||||||||||||||||||||||||  |||
seq2  TTT--AAAAATACCT-ATAAAATACACACATATATAGAAGTAAAA--TAA  89

seq1  AAATTATATTAATATTTTAACAAATCATATCATGTGTATTTCTATGGAGA  150
      ||||   | ||||| |||||||||||||||||||||||||||||||||||
seq2  AAAT--AAATAATA-TTTAACAAATCATATCATGTGTATTTCTATGGAGA  136

seq1  ATTGACAAATATTCAT-AATTTCTCCCAGTTTCTAGGAAAATTTT-ATTA  198
      | |||||||   |||| |||||||||||||||||||||||||||| ||||
seq2  A-TGACAAAATATCATAAATTTCTCCCAGTTTCTAGGAAAATTTTAATTA  185

seq1  TAAGCCTTCTGTGAAAAATAGCTATGTCTTACTAAACTTTAATGTATAAT  248
      ||| |||||| | |||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTCT-TTAAAAATAGCTATGTCTTACTAAACTTTAATGTATAAT  234

seq1  TTTTTTCCATTGTACTAGCTTTGTGTTCACTACTTAATAATTCTGTTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCATTGTACTAGCTTTGTGTTCACTACTTAATAATTCTGTTCTC  284

seq1  ATGATTTTGCAAAGATCATTTACATATAAATTAATTTTTGTAAGCCTTGG  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGATTTTGCAAAGATCATTTACATATAAA-TAATTTTTGTAAGCCTTGG  333

seq1  GGTGAAGGTGAGGGTAATACAGCTATCCTGATTAGAGCTGAACACTCGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGTGAGGGTAATACAGCTATCCTGATTAGAGCTGAACACTCGGT  383

seq1  CACTACTTTTAGTACTTTAACCACTTATGTATCTCCTTGTTGATTGCCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTTTAGTACTTTAACCACTTATGTATCTCCTTGTTGATTGCCCA  433

seq1  GGACATAAAGAAGATTTTCTGACAAAGGCTGAGAGCAGCCTAGATCTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAAAGAAGATTTTCTGACAAAGGCTGAGAGCAGCCTAGATCTGTG  483

seq1  AGTATAAGCATGAATATTTAGAAGGCAATTTGACACCATGATTATTGAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGCATGAATATTTAGAAGGCAATTTGACACCATGATTATTGAGC  533

seq1  AAAATAACAACAGTAGATTCTCCCTTTGGGCATGTGAGCTCCCTAGCCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACAACAGTAGATTCTCCCTTTGGGCATGTGAGCTCCCTAGCCAT  583

seq1  GAGCTTTGAGCAGGATTTCAATATCAAGTATGAAACTGTCTCTTGTGGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGAGCAGGATTTCAATATCAAGTATGAAACTGTCTCTTGTGGAA  633

seq1  CAGGGTTCAAATCTGATCAGAAAGTGGGTACTTATTTCATAACACTTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCAAATCTGATCAGAAAGTGGGTACTTATTTCATAACACTTGTG  683

seq1  CCACTATGACTACAGGAGAAAAATCTTTCCTGGAAGGATCATTAAAGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGACTACAGGAGAAAAATCTTTCCTGGAAGGATCATTAAAGTAA  733

seq1  TATAAGGTCATGAAAACATTAATTTTTTTTTTTTATCTCAGAAGGCTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTCATGAAAACATTAATTTTTTTTTTTTATCTCAGAAGGCTGAA  783

seq1  TTCCACTTTGAGGTACCCATAAACATATGAGCAATACTATCATGATTAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTTGAGGTACCCATAAACATATGAGCAATACTATCATGATTAGA  833

seq1  AAGATACATGAAATTGGGAGTGGTGTGATGAGGAACATGAATAAAGTTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACATGAAATTGGGAGTGGTGTGATGAGGAACATGAATAAAGTTGG  883

seq1  AAAGGGTCATGGTAGATACAATATTTCATTATAAACATGCATAAAGTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTCATGGTAGATACAATATTTCATTATAAACATGCATAAAGTTCT  933

seq1  CAAAAATAAAATAAAAATATTTACATAGTACATTAGTTTTCTTTGGGTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAAATAAAAATATTTACATAGTACATTAGTTTTCTTTGGGTTG  983

seq1  TCAAAATTATAATAAAATGAACTTAGAAATATTTTAATGAGATCATATCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTATAATAAAATGAACTTAGAAATATTTTAATGAGATCATATCC  1033

seq1  AGTTGTTAGGATGAGGCCACTCACCCATCTCAAAAATATTAACCCAGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTAGGATGAGGCCACTCACCCATCTCAAAAATATTAACCCAGAAT  1083

seq1  TGCTCCTGTATAAATGGAATTC  1120
      ||||||||||||||||||||||
seq2  TGCTCCTGTATAAATGGAATTC  1105