BAC Information

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BAC

Clone NameB6Ng01-039E08
Chromosome7 (Build37)
Map Location 117,405,773 - 117,564,473
singlet/doubletdoublet
Overlap geneSwap70, EG668368, Sbf2
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
Downstream geneLOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E08.bB6Ng01-039E08.g
ACCDH866583DH866584
length8991,103
definitionDH866583|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E08, 5' end.DH866584|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,405,773 - 117,406,672)(117,563,358 - 117,564,473)
sequence
gaattcagaaaggggtggaaaagcagacaaggattagagaatggaaccca
gcacactgagtgccgggacacagaaggggatatagggaatgcagcacctg
ctgtagggttggttgaagcggtgtgagggaacctggggtcttgttaaaaa
tgcagtgtggcctttggagagggtgagatgcccagtatgaggcctgaagc
aagcagatggagaaggatcacatttgtgaactgtctggaaaaacagtact
ttctttctctttctcccgtgagttttttgtttattctctctctctcatcc
tcccccatccctctttttttattctttgagacaagagtttcactctgtag
ccctggctgacctgaaatagctgtgctttagtctcctaagtgctgccatt
aagtatgccatggcatgcagctaaatatttattttccatttcaacctttt
aggaagataagcattttatatcctgatccagcacaaacaaatatgtgtac
acaaaaaacttgtaaaactgtatctggctctactgtgattgaactagcat
attttcattccatcacaaaaatcctggcttacttcatagtgagaaccact
gatcccaggaatgtcaacagcactttgtttctggtttgatgtaaatggtg
aggacatagagtactggcatggggtttgtgggtgattttgcaccaactga
agtcagtaatgaggggaggagatcagagaggacaggaggtgtggtaaata
tgtgcaaagtatctgatgtgcacgtatggaataccatgggtcacacccat
cagtgtgtactatgaatatgctctagaaatacatcagatagagaggaaca
ttgggaaggtagagacgaatgatagtgtttgagagtaaccacacggggt
gaattctcttgttctcagacccttcctgctgccttgagggcccttaaagg
aaaagcagcaagacagtgtctcactgatgaactgggcttgcacgttcagc
agaaccgggcaatactggaccatcaacagtttgactacataataaggatg
atgaactgtactctacaggtaatcttgagtgattttagattattcccatt
ttgcaaataccttttttccccaaaagatatattaattactgaactatcaa
tgtcttgaggctgctatggctaaaaaagagctgaaatccatggagtcact
tgctccttagctgatgtaaatcctcacttctttgttctttccttgttttc
tagtgacaaatactttgttactttactgattttataatatgagcaatata
ttaaaggcccatagtcgtatattaccaaattttatacttatgtctgttaa
tgtagtttttggctattttattgggttttaatgttttattacaccctaat
caaaccttcaacactaggtaggagagaaagaaggttagagggaaagggaa
catacatctctttggactacttcctactgattaggatgttgagtcccttg
aggcaagtccaatcttcgtcatcagaatacctcaatttcttctcatcaaa
ccacaataacaacgaccaggagcagcacgggggcagcagcctccacaggc
tctcagggcctggctgtgcatgaagcaaatcatgacacctgctgttaggt
ggcctcttatcccacatctgggactaaacaaaaacctattcacataacat
aactgggttttttaagaaaccaaaattctctctatatatgtcactccctt
ttcagtttttagatgttatggagcagagaagaattaataacgagcaatcc
aataataactgaatgaattgaaagaacagtttctataggcttcagaataa
gtatatgttcttacagagatgacattcctataaataatgagagcccaaat
tagagaaacaattgggttctgttctttgccatcctgtctctttgagattg
agataatgctctttcggtattctgtgggcacttactcgctaatacatgta
gcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_117405773_117406672
seq2: B6Ng01-039E08.b_44_942

seq1  GAATTCAGAAAGGGGTGGAAAAGCAGACAAGGATTAGAGAATGGAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGGGTGGAAAAGCAGACAAGGATTAGAGAATGGAACCCA  50

seq1  GCACACTGAGTGCCGGGACACAGAAGGGGATATAGGGAATGCAGCACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGAGTGCCGGGACACAGAAGGGGATATAGGGAATGCAGCACCTG  100

seq1  CTGTAGGGTTGGTTGAAGCGGTGTGAGGGAACCTGGGGTCTTGTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGTTGGTTGAAGCGGTGTGAGGGAACCTGGGGTCTTGTTAAAAA  150

seq1  TGCAGTGTGGCCTTTGGAGAGGGTGAGATGCCCAGTATGAGGCCTGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGGCCTTTGGAGAGGGTGAGATGCCCAGTATGAGGCCTGAAGC  200

seq1  AAGCAGATGGAGAAGGATCACATTTGTGAACTGTCTGGAAAAACAGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGGAGAAGGATCACATTTGTGAACTGTCTGGAAAAACAGTACT  250

seq1  TTCTTTCTCTTTCTCCCGTGAGTTTTTTGTTTATTCTCTCTCTCTCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTTTCTCCCGTGAGTTTTTTGTTTATTCTCTCTCTCTCATCC  300

seq1  TCCCCCATCCCTCTTTTTTTATTCTTTGAGACAAGAGTTTCACTCTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATCCCTCTTTTTTTATTCTTTGAGACAAGAGTTTCACTCTGTAG  350

seq1  CCCTGGCTGACCTGAAATAGCTGTGCTTTAGTCTCCTAAGTGCTGCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGACCTGAAATAGCTGTGCTTTAGTCTCCTAAGTGCTGCCATT  400

seq1  AAGTATGCCATGGCATGCAGCTAAATATTTATTTTCCATTTCAACCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCCATGGCATGCAGCTAAATATTTATTTTCCATTTCAACCTTTT  450

seq1  AGGAAGATAAGCATTTTATATCCTGATCCAGCACAAACAAATATGTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATAAGCATTTTATATCCTGATCCAGCACAAACAAATATGTGTAC  500

seq1  ACAAAAAACTTGTAAAACTGTATCTGGCTCTACTGTGATTGAACTAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACTTGTAAAACTGTATCTGGCTCTACTGTGATTGAACTAGCAT  550

seq1  ATTTTCATTCCATCACAAAAATCCTGGCTTACTTCATAGTGAGAACCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTCCATCACAAAAATCCTGGCTTACTTCATAGTGAGAACCACT  600

seq1  GATCCCAGGAATGTCAACAGCACTTTGTTTCTGGTTTGATGTAAATGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGGAATGTCAACAGCACTTTGTTTCTGGTTTGATGTAAATGGTG  650

seq1  AGGACATAGAGTACTGGCATGGGGTTTGTGGGTGATTTTGCACCAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATAGAGTACTGGCATGGGGTTTGTGGGTGATTTTGCACCAACTGA  700

seq1  AGTCAGTAATGAGGGGAGGAGATCAGAGAGGACAGGAGGTGTGGTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTAATGAGGGGAGGAGATCAGAGAGGACAGGAGGTGTGGTAAATA  750

seq1  TGTGCAAAGTATCTGATGTGCACGTATGGAATTACCAT-GGTCACACCCA  799
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TGTGCAAAGTATCTGATGTGCACGTATGGAA-TACCATGGGTCACACCCA  799

seq1  TCAGTGTGTACTATGAATATGCTCTAGAAATACATCAGATAGAGAGGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGTGTGTACTATGAATATGCTCTAGAAATACATCAGATAGAGAGG-AA  848

seq1  CATTGGGAAGGTAGAGACGAATGATAGTGTTTGAGAGTAACCACACGGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAAGGTAGAGACGAATGATAGTGTTTGAGAGTAACCACACGGGG  898

seq1  T  900
      |
seq2  T  899

seq1: chr7_117563358_117564473
seq2: B6Ng01-039E08.g_69_1171 (reverse)

seq1  GGCTACATGTATATGCGAGTATAAGTGCCCACAGAATACAG-AAGAGCAT  49
      ||||||||||||  |||||  |||||||||||||||||| | ||||||||
seq2  GGCTACATGTATTAGCGAG--TAAGTGCCCACAGAATACCGAAAGAGCAT  48

seq1  AATTCTCAATACTCAAAGAGAACAGGATGGCAAAGAACAAGGAACCCAAA  99
       | ||||||| ||||||||| ||||||||||||||||||  |||||| ||
seq2  TA-TCTCAAT-CTCAAAGAG-ACAGGATGGCAAAGAACA--GAACCC-AA  92

seq1  TTGTTTCTTCTAATTTGGGCTCTCATTATTTTATAGGAATGTCATCTCTG  149
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TTGTTTC-TCTAATTTGGGCTCTCATTA-TTTATAGGAATGTCATCTCTG  140

seq1  TAAGAACATATACTTATTCTGAAGCCTATAGAAAACTGTTTCTTTCAATT  199
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TAAGAACATATACTTATTCTGAAGCCTATAG-AAACTG-TTCTTTCAATT  188

seq1  CATTCAGTTATTATTGGATTGCTCGTTATTAATTCCTCTCTGCTTCAATA  249
      ||||||||||||||||||||||||||||||||||| ||||||| || |||
seq2  CATTCAGTTATTATTGGATTGCTCGTTATTAATTCTTCTCTGC-TCCATA  237

seq1  ACATCTAAAAACTGAAAAGGGAGTGACATATATAGAGAGAATTTTGGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAAAAACTGAAAAGGGAGTGACATATATAGAGAGAATTTTGGTTT  287

seq1  CTTAAAAAACCCAGTTATGTTATGTGAATAGGTTTTTGTTTTAGTCCCAG  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTAAAAAACCCAGTTATGTTATGTGAATAGGTTTTTG-TTTAGTCCCAG  336

seq1  ATGTGGGATAAGAGGCCACCTAACAGCAGGTGTCATGATTTGCTTCATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGATAAGAGGCCACCTAACAGCAGGTGTCATGATTTGCTTCATGC  386

seq1  ACAGCCAGGCCCTGAGAGCCTGTGGAGGCTGCTGCCCCCGTGCTGCTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGCCCTGAGAGCCTGTGGAGGCTGCTGCCCCCGTGCTGCTCCT  436

seq1  GGTCGTTGTTATTGTGGTTTGATGAGAAGAAATTGAGGTATTCTGATGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTGTTATTGTGGTTTGATGAGAAGAAATTGAGGTATTCTGATGAC  486

seq1  GAAGATTGGACTTGCCTCAAGGGACTCAACATCCTAATCAGTAGGAAGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTGGACTTGCCTCAAGGGACTCAACATCCTAATCAGTAGGAAGTA  536

seq1  GTCCAAAGAGATGTATGTTCCCTTTCCCTCTAACCTTCTTTCTCTCCTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGAGATGTATGTTCCCTTTCCCTCTAACCTTCTTTCTCTCCTAC  586

seq1  CTAGTGTTGAAGGTTTGATTAGGGTGTAATAAAACATTAAAACCCAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTGAAGGTTTGATTAGGGTGTAATAAAACATTAAAACCCAATAA  636

seq1  AATAGCCAAAAACTACATTAACAGACATAAGTATAAAATTTGGTAATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAAAAACTACATTAACAGACATAAGTATAAAATTTGGTAATATA  686

seq1  CGACTATGGGCCTTTAATATATTGCTCATATTATAAAATCAGTAAAGTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTATGGGCCTTTAATATATTGCTCATATTATAAAATCAGTAAAGTAA  736

seq1  CAAAGTATTTGTCACTAGAAAACAAGGAAAGAACAAAGAAGTGAGGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATTTGTCACTAGAAAACAAGGAAAGAACAAAGAAGTGAGGATTT  786

seq1  ACATCAGCTAAGGAGCAAGTGACTCCATGGATTTCAGCTCTTTTTTAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCTAAGGAGCAAGTGACTCCATGGATTTCAGCTCTTTTTTAGCC  836

seq1  ATAGCAGCCTCAAGACATTGATAGTTCAGTAATTAATATATCTTTTGGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGCCTCAAGACATTGATAGTTCAGTAATTAATATATCTTTTGGGG  886

seq1  AAAAAAGGTATTTGCAAAATGGGAATAATCTAAAATCACTCAAGATTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTATTTGCAAAATGGGAATAATCTAAAATCACTCAAGATTACC  936

seq1  TGTAGAGTACAGTTCATCATCCTTATTATGTAGTCAAACTGTTGATGGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTACAGTTCATCATCCTTATTATGTAGTCAAACTGTTGATGGTC  986

seq1  CAGTATTGCCCGGTTCTGCTGAACGTGCAAGCCCAGTTCATCAGTGAGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGCCCGGTTCTGCTGAACGTGCAAGCCCAGTTCATCAGTGAGAC  1036

seq1  ACTGTCTTGCTGCTTTTCCTTTAAGGGCCCTCAAGGCAGCAGGAAGGGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTGCTGCTTTTCCTTTAAGGGCCCTCAAGGCAGCAGGAAGGGTC  1086

seq1  TGAGAACAAGAGAATTC  1116
      |||||||||||||||||
seq2  TGAGAACAAGAGAATTC  1103