BAC Information

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BAC

Clone NameB6Ng01-039I10
Chromosome7 (Build37)
Map Location 9,869,460 - 9,870,591
singlet/doubletsinglet
Overlap geneGm1961
Upstream geneLOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083
Downstream geneV2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I10.bB6Ng01-039I10.g
ACCDH866774DH866775
length1,1821,109
definitionDH866774|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I10, 5' end.DH866775|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgcttacctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgattctttatatatattggatattagtcccc
tatcctatttaggataggtaaagatcctttcccgacctgttggtggcctt
tttgtctcattgacagtgtctttttccccgcagaagctttgcagtttcct
gaggtcccatttgtcaattctcaaccttacagaactagccattgcttttc
tattcaagaattttcccctgtgcccatatctttgaggcttttccccactt
tctcctctataagtttcagtgtctctggttttatgtcgagctcgttgatc
cacttagatttgaccttagtccaaggagataggaatcgatcaattcacat
tcttctacatgataaccaccagtggtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatggtttttgctcccttgtcaaagatcaagtga
ccatagatgtgtgggttcatttctgggtcttcaattctattccaatggtc
tacttgtctgttgatataccagtaccatgcagtttttatcacaattgctc
tctagtacagctttaggtcaggcatggtgattccaccagaggttctttta
tccttgagaaggttttttgctatcctaggttttttgttattccagatgaa
tctggcaattgccctttctaattcattgaagaattgagttggaattttga
tggggattgcactgaatctgtagtttgtttttggcaacatagccattttt
acaatattgatcctggcaatctatgagcattggagacctttccttcttct
gagatcttctttaattattttcatcagagacttaaatttcttatcataca
gatctttcacttccttatttagggtcatgtgaagtatattacattatttg
tgactattgagaaggtgttgtttccctaatttctttctcagccttgttta
ctcttgtatagagcaaagccattgacttgttgagttaatttatatcagct
acttccctgagctgttttcaggtaaggtctctgttgaaattttaaggcac
ttatatatacaatcatcggcaaaggatattgacatcttttccatttgatc
ccctgtccctttattgtgctgaatggcctgct
gaattctttgccagagatctaatgccaatttaaattctgactctaaatag
ttatacactcacaggtagtcaaatggcgaactccacatactggattggag
tttttcatcctttctcattgctaaaatgtcatgaatagccaggctaagaa
tggtatttcaagcctttgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaact
ccagatatttaaatgctgggttatagagacatgttgataaaatttatttc
tgtttcttcacagtttatctctgatgacaaaatttatatcactaccatgt
ttgtaaataataatgctgttatttcagtttaccaatgataatttaaaatt
gtgaccaagatgaagatcacacctatctggggacagaaataatatgctct
atatcttggaacagcaggaacaaatctctgcttgttgagcttggtataaa
taatgaaacactctgactgatagtcagtcaaggctgtaagattctctctt
ccaccatgcccgacttaattctacatggccttctctattcctccttgaag
gtatctgtcaacttctggtggtagtccctagttgaaagcctatcatattt
ctgaatagtaagtatcctggaactacctagattgacataaccataagtct
aaccacatccattaactttcttaatagctatcaaagtcccccaaagagac
atgatgttaagaattcctggacgatgataactcatacgtggagataagaa
gctgtccaggaagttccagaaacttaaagatacctcccaattgggtcctg
taagcagaaacgaacacatactctcttcattacagaaatagtttgggata
gggctttgtttttttttatgtaataaatatggtgtaggtaatccagtttt
tccatcacacggcccaaggtgtatcttatgatcaagacatatttggtaaa
gatcagattcctgttgattcatccattgaaaagaccatgccaagcatttt
tgtgttttagttgttttctgtaaagagttcagtgtttattatgaagatga
tttatctgaaatttgtagtcatgcagcctatgctaactgattctgctact
gacatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9869460_9870591
seq2: B6Ng01-039I10.g_66_1174 (reverse)

seq1  TTAGATGTCAGATGCAGAAATTTCCAGTATAGCATAGAGCTTCCACTGAC  50
      |||||||||||  ||||||     |||| |||||||| ||| |   ||||
seq2  TTAGATGTCAGTAGCAGAA----TCAGT-TAGCATAG-GCTGC--ATGAC  42

seq1  TACAAATATTCACGTATAATCATCTGTCCATAATAAACACTGTACTCTTT  100
      ||||||| ||||  || |||||||  | |||||||||||||| |||| ||
seq2  TACAAAT-TTCAGATA-AATCATC--TTCATAATAAACACTGAACTC-TT  87

seq1  TACAGAAAAACAACTAAAAACCACAAATATGCTTTGGCATTGGTCTTTTC  150
      ||||| |||||||||||||  |||||| |||| |||||| ||||||||||
seq2  TACAG-AAAACAACTAAAA--CACAAAAATGC-TTGGCA-TGGTCTTTTC  132

seq1  AATGGATGAAATCAACAGGAATCCTGATCTTTTACCAAATATGTCTTTGA  200
      |||||||| ||||||||||||| |||||| ||||||||||||||| ||||
seq2  AATGGATG-AATCAACAGGAAT-CTGATC-TTTACCAAATATGTC-TTGA  178

seq1  TCATAAGATACACTTTGGGCCGTTGTGATGGAAAAACTGGAATACCTACA  250
      ||||||||||||| |||||||| |||||||||||||||||| ||||||||
seq2  TCATAAGATACACCTTGGGCCG-TGTGATGGAAAAACTGGATTACCTACA  227

seq1  CCATATTTATTACATAAAAAAAAACAAAGCCCTATCCCAAACTATTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTATTACATAAAAAAAAACAAAGCCCTATCCCAAACTATTTCTG  277

seq1  TAATGAAGAGAGTATGTGTTCGTTTCTGCTTACAGGACCCAATTGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGAGAGTATGTGTTCGTTTCTGCTTACAGGACCCAATTGGGAGG  327

seq1  TATCTTTAAGTTTCTGGAACTTCCTGGACAGCTTCTTATCTCCACGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAGTTTCTGGAACTTCCTGGACAGCTTCTTATCTCCACGTATG  377

seq1  AGTTATCATCGTCCAGGAATTCTTAACATCATGTCTCTTTGGGGGACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCATCGTCCAGGAATTCTTAACATCATGTCTCTTTGGGGGACTTT  427

seq1  GATAGCTATTAAGAAAGTTAATGGATGTGGTTAGACTTATGGTTATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTATTAAGAAAGTTAATGGATGTGGTTAGACTTATGGTTATGTCA  477

seq1  ATCTAGGTAGTTCCAGGATACTTACTATTCAGAAATATGATAGGCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGTAGTTCCAGGATACTTACTATTCAGAAATATGATAGGCTTTCA  527

seq1  ACTAGGGACTACCACCAGAAGTTGACAGATACCTTCAAGGAGGAATAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGACTACCACCAGAAGTTGACAGATACCTTCAAGGAGGAATAGAG  577

seq1  AAGGCCATGTAGAATTAAGTCGGGCATGGTGGAAGAGAGAATCTTACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATGTAGAATTAAGTCGGGCATGGTGGAAGAGAGAATCTTACAGC  627

seq1  CTTGACTGACTATCAGTCAGAGTGTTTCATTATTTATACCAAGCTCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGACTATCAGTCAGAGTGTTTCATTATTTATACCAAGCTCAACA  677

seq1  AGCAGAGATTTGTTCCTGCTGTTCCAAGATATAGAGCATATTATTTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATTTGTTCCTGCTGTTCCAAGATATAGAGCATATTATTTCTGT  727

seq1  CCCCAGATAGGTGTGATCTTCATCTTGGTCACAATTTTAAATTATCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATAGGTGTGATCTTCATCTTGGTCACAATTTTAAATTATCATTG  777

seq1  GTAAACTGAAATAACAGCATTATTATTTACAAACATGGTAGTGATATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTGAAATAACAGCATTATTATTTACAAACATGGTAGTGATATAAA  827

seq1  TTTTGTCATCAGAGATAAACTGTGAAGAAACAGAAATAAATTTTATCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCATCAGAGATAAACTGTGAAGAAACAGAAATAAATTTTATCAAC  877

seq1  ATGTCTCTATAACCCAGCATTTAAATATCTGGAGTTTTTTTTTTTTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTATAACCCAGCATTTAAATATCTGGAGTTTTTTTTTTTTTTTT  927

seq1  TTTTTTTTTTTTTGCAAAGGCTTGAAATACCATTCTTAGCCTGGCTATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGCAAAGGCTTGAAATACCATTCTTAGCCTGGCTATTC  977

seq1  ATGACATTTTAGCAATGAGAAAGGATGAAAAACTCCAATCCAGTATGTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTTTAGCAATGAGAAAGGATGAAAAACTCCAATCCAGTATGTGG  1027

seq1  AGTTCGCCATTTGACTACCTGTGAGTGTATAACTATTTAGAGTCAGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGCCATTTGACTACCTGTGAGTGTATAACTATTTAGAGTCAGAATT  1077

seq1  TAAATTGGCATTAGATCTCTGGCAAAGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  TAAATTGGCATTAGATCTCTGGCAAAGAATTC  1109