BAC Information

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BAC

Clone NameB6Ng01-041E23
Chromosome7 (Build37)
Map Location 24,998,066 - 25,170,996
singlet/doubletdoublet
Overlap geneZfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4
Upstream geneLOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111
Downstream gene1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041E23.bB6Ng01-041E23.g
ACCDH868007DH868008
length1,073616
definitionDH868007|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E23, 5' end.DH868008|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,998,066 - 24,998,967)(25,170,381 - 25,170,996)
sequence
gaattctacccaactttcaaagaagagctgacaagaacacccctgaaact
attccacaaaatagaaacagatggaacactgccaaatccattctatgagg
ccacagtgaagtggaaacttctggtttgtttggaaaatcagttaagttga
atggtgttttgctgaagcagacacaggtgaaaggatgtcttcttaaagca
gacatgtgaacagacacgtgatgaaggaatctaaatatgacccacagact
gtggaagaggagcactggtttggtttgctcttcctcgctattcttcgcta
acagcacacaagtattgtttcaacttacatagcactgttgagctccactt
gtggaaacacggccatcgagagaaacttgtcaaagaactgcctgtgaggt
tcctgcagcttctgtggcctcccctcaggtcagttgaccagcctggcggc
ttcttcaggattgaactacagctgctggttcatgcgtggtgtctgcctgc
gggtaggacatactatagttgctgatttgtgtatggtgtctgaatcctat
ttggtgtttgctacaggacggtactgctgacaaagaagatcgagcttgcc
cccaaataagtattgctaaacagatccactttccccatagcctaataaca
tttctcttccactgtctctggtgggcaagaggagaagttatcctggggag
gcttaaaagatgtgatacagcatttattttactattttataattttggag
atgtcaagggctttaaaaacagacaatgcccctgtttatacttcaaatag
ctggtgtctgacttttaaaatgtcacactccactgacagggacaggctgt
tatggaatgagcccatcagactttacagattataaattctcatcccctca
tcatatttactaaacaaaatgtaagtccatctttgacatttccagtcaaa
tactccaaacccctataaataaaagacttgctactggataataaaaagga
ctgaaattttatttggaagatgctttgctgtctgttttcaaggaaatgat
ccctttgtggctcagactgttga
gaattcaaaccctttgctctggcttcagaactatcagggtgttgatttca
accactccggtgttagaaagctgcgggcaggtacttcaggggacttggct
tttttctttctttctttctttctttctttctttttaacatgtatttattg
gtgggtggcgggtgggacatggcattatacacatatcagaggatgatagc
ttgtgggagtcatgtctctcctctacctaccctgctggtcctggggatcg
aactcaggttgtcaggcttggctgcaagttcctgtacctactgagccgtt
gcaccaacccattttgttatttttgagtcaagatctcatgtgactgaggc
tggccttgaactcctaatcctgcttctaccttataagtgttgggaaaata
ggtgaggctagcacccccccccccaatttagctgaggctattcccaaact
caatttcttcctgccttcttccactaattttgtttttgtttggttgtttt
gagaccaggttttagtatatatccctagctgtcctggagctcactatgta
gactagattatactggtcttgaactcacagagatcctcctgcctccacct
cccgagtccatctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24998066_24998967
seq2: B6Ng01-041E23.b_237_1120

seq1  TTCTTAAAGCAGACATGTGAACAGACACGTGATGAAGGAATCTAAATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAGCAGACATGTGAACAGACACGTGATGAAGGAATCTAAATATG  50

seq1  ACCCACAGACTGTGGAAGAGGAGCACTGGTTTGGTTTGCTCTTCCTCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGACTGTGGAAGAGGAGCACTGGTTTGGTTTGCTCTTCCTCGCT  100

seq1  ATTCTTCGCTAACAGCACACAAGTATTGTTTCAACTTACATAGCACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCGCTAACAGCACACAAGTATTGTTTCAACTTACATAGCACTGTT  150

seq1  GAGCTCCACTTGTGGAAACACGGCCATCGAGAGAAACTTGTCAAAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCACTTGTGGAAACACGGCCATCGAGAGAAACTTGTCAAAGAACT  200

seq1  GCCTGTGAGGTTCCTGCAGCTTCTGTGGCCTCCCCTCAGGTCAGTTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGGTTCCTGCAGCTTCTGTGGCCTCCCCTCAGGTCAGTTGACC  250

seq1  AGCCTGGCGGCTTCTTCAGGATTGAACTACAGCTGCTGGTTCATGCGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCGGCTTCTTCAGGATTGAACTACAGCTGCTGGTTCATGCGTGG  300

seq1  TGTCTGCCTGCGGGTAGGACATACTATAGTTGCTGATTTGTGTATGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTGCGGGTAGGACATACTATAGTTGCTGATTTGTGTATGGTGT  350

seq1  CTGAATCCTATTTGGTGTTTGCTACAGGACGGTACTGCTGACAAAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCTATTTGGTGTTTGCTACAGGACGGTACTGCTGACAAAGAAGA  400

seq1  TCGAGCTTGCCCCCAAATAAGTATTGCTAAACAGATCCACTTTCCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTTGCCCCCAAATAAGTATTGCTAAACAGATCCACTTTCCCCATA  450

seq1  GCCTAATAACATTTCTCTTCCACTGTCTCTGGTGGGCAAGAGGAGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATAACATTTCTCTTCCACTGTCTCTGGTGGGCAAGAGGAGAAGTT  500

seq1  ATCCTGGGGAGGCTTAAAAGATGTGATACAGCATTTATTTTACTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGGAGGCTTAAAAGATGTGATACAGCATTTATTTTACTATTTTA  550

seq1  TAATTTTGGAGATGTCAAGGGCTTTAAAAACAGACAATGCCCCTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGGAGATGTCAAGGGCTTTAAAAACAGACAATGCCCCTGTTTAT  600

seq1  ACTTCAAATAGCTGGTGTCTGACTTTTAAAATGTCACACTCCACTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAATAGCTGGTGTCTGACTTTTAAAATGTCACACTCCACTGACAG  650

seq1  GGACAGGCTGTTATGGAATGAGCCCATCAGACTTTACAGATTATAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTGTTATGGAATGAGCCCATCAGACTTTACAGATTATAAATTC  700

seq1  TCATCCCCTCATCATATTTTACAAAACAAAATGTAAGTCCATCTTTGAAC  750
      |||||||||||||||| ||||| |||||||||||||||||||||||| ||
seq2  TCATCCCCTCATCATA-TTTACTAAACAAAATGTAAGTCCATCTTTG-AC  748

seq1  ATTTCCAAGTCAAATTACTCCAAACCCCTAATAAAATAAAAAGACCTGCT  800
      |||||| ||||||| |||||||||||||| |||||   ||||||| ||||
seq2  ATTTCC-AGTCAAA-TACTCCAAACCCCT-ATAAA--TAAAAGACTTGCT  793

seq1  AACTGGATAATAAAAAGGACTGAATATTTTATTTTGAGAGATGCTTTGCT  850
       ||||||||||||||||||||||| ||||||||| || ||||||||||| 
seq2  -ACTGGATAATAAAAAGGACTGAA-ATTTTATTTGGA-AGATGCTTTGC-  839

seq1  TGTCTGTTTTCACAGGATATTGATCCACCTCTGTGGCTTCCAGACCGGTT  900
      |||||||||||| |||| | |||||  ||| |||||||  |||| | |||
seq2  TGTCTGTTTTCA-AGGA-AATGATC--CCTTTGTGGCT--CAGA-CTGTT  882

seq1  GA  902
      ||
seq2  GA  884

seq1: chr7_25170381_25170996
seq2: B6Ng01-041E23.g_68_683 (reverse)

seq1  AGCAGATGGACTCGGGAGGTGGAGGCAGGAGGATCTCTGTGAGTTCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGGACTCGGGAGGTGGAGGCAGGAGGATCTCTGTGAGTTCAAGA  50

seq1  CCAGTATAATCTAGTCTACATAGTGAGCTCCAGGACAGCTAGGGATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATAATCTAGTCTACATAGTGAGCTCCAGGACAGCTAGGGATATAT  100

seq1  ACTAAAACCTGGTCTCAAAACAACCAAACAAAAACAAAATTAGTGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACCTGGTCTCAAAACAACCAAACAAAAACAAAATTAGTGGAAGA  150

seq1  AGGCAGGAAGAAATTGAGTTTGGGAATAGCCTCAGCTAAATTGGGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAGAAATTGAGTTTGGGAATAGCCTCAGCTAAATTGGGGGGGG  200

seq1  GGGTGCTAGCCTCACCTATTTTCCCAACACTTATAAGGTAGAAGCAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTAGCCTCACCTATTTTCCCAACACTTATAAGGTAGAAGCAGGAT  250

seq1  TAGGAGTTCAAGGCCAGCCTCAGTCACATGAGATCTTGACTCAAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTCAAGGCCAGCCTCAGTCACATGAGATCTTGACTCAAAAATAA  300

seq1  CAAAATGGGTTGGTGCAACGGCTCAGTAGGTACAGGAACTTGCAGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGGTTGGTGCAACGGCTCAGTAGGTACAGGAACTTGCAGCCAAG  350

seq1  CCTGACAACCTGAGTTCGATCCCCAGGACCAGCAGGGTAGGTAGAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAACCTGAGTTCGATCCCCAGGACCAGCAGGGTAGGTAGAGGAGA  400

seq1  GACATGACTCCCACAAGCTATCATCCTCTGATATGTGTATAATGCCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGACTCCCACAAGCTATCATCCTCTGATATGTGTATAATGCCATGT  450

seq1  CCCACCCGCCACCCACCAATAAATACATGTTAAAAAGAAAGAAAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCGCCACCCACCAATAAATACATGTTAAAAAGAAAGAAAGAAAGA  500

seq1  AAGAAAGAAAGAAAAAAGCCAAGTCCCCTGAAGTACCTGCCCGCAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAAAAGCCAAGTCCCCTGAAGTACCTGCCCGCAGCTTT  550

seq1  CTAACACCGGAGTGGTTGAAATCAACACCCTGATAGTTCTGAAGCCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCGGAGTGGTTGAAATCAACACCCTGATAGTTCTGAAGCCAGAG  600

seq1  CAAAGGGTTTGAATTC  616
      ||||||||||||||||
seq2  CAAAGGGTTTGAATTC  616