BAC Information

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BAC

Clone NameB6Ng01-041L11
Chromosome7 (Build37)
Map Location 103,012,910 - 103,122,696
singlet/doubletdoublet
Overlap geneFrda-ps
Upstream geneLOC100040132, LOC666823
Downstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041L11.bB6Ng01-041L11.g
ACCDH868296DH868297
length1,043814
definitionDH868296|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L11, 5' end.DH868297|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,121,644 - 103,122,696)(103,012,910 - 103,013,724)
sequence
gaattctcctcctgtcactcttctggtcaagtgatttttatggcctctga
gtgtttgataaggtcaaaacttcttgattgtgcattcttggccatctgca
gctcagttaagacactcaattccactctgcaagactttattcaatgggat
acactaagaactcactctgccttccactctttggctcagcagttgcctgg
gaattggaataccttaatcttttagtttgtatctgtccaaatagggccag
ttgtgttccagtaacaaatggccctgttgtctatcttagtggcttattat
ataaagagttgttttatttcccctgaattcttttactctttctgtgggag
ctacagctcagctcaccaactgagtatcagagtgcagggaaatcagaaga
gggaggatcgaatactgaatttttacttagatagagcatattaatttcta
ctgcatttccttggttaagtcagtcacatgaccaagtctgccatcaatga
cagttggggatacattcttctcccagaaaaagagtagatgtctgtgagca
ttaatataaccttgaagcaatttcatagggtgctctaagataactgactc
tttgtttttattctcagagcagtgggcactctactttttatcagagtttt
gaaagcctgtgattatgtcttcttttagggaatatgaagaatcagaggta
gggggacacattgttccctcttcttgcagtgtgtgggaaagtactttgtc
cactggacacttgatgttccctgaacagcatcagctgcagttagccaatg
tgccagttcggatacagtatttgaaacttggaaagcctgtgaaggaatga
aaagacctgtgtatccgttcagtttacagttttatcttaagcatttaaca
agcttggaacgtagggactgcttctactttaattttccatgtgagatgct
ggctaagagacatgggaatgctgtcttcatagggactgaaccttgacagt
tcaaatttcagtaaattgggggcatctatgaagttactcactt
gaattcaagccactcctaaatatccacttggtggagctgtagtagaggaa
ttcaagttgcaaaggctggcaacaaggctggggttaaaggagggaagaag
aacctgaccctgaagagaattttaaatattgtaagtgaatgaaatactgg
ctctctttatcatgtagatataaatctcttcttcagtcttctcatttctc
atgtggatatagacatagatttatgtcatatttaatagagcatttatttt
gtacatttttacatcttgtgttatattctattttctgagttaattggtga
aaatcaaatctcaccttcttgaagtgaaagagacagtaaagattcattga
atataatcatctcacagatggtttggtcaagtcttaagacaggagacata
taaccaaggtcatttgtctagagtatgtgagaggactttttagtccctct
ttcaaaagcatgttccaaaacagggattctttataaaggatactttcatc
acctaccctgctagctctgggagtgtgcccagataaataaatagatgaaa
tgagtacattcatatagaggtaagagcaggaagaaggcattccagtctaa
gattttaaaaaattaagaaagttggatagtcctttttaactgtatgcatt
tgccagacttcttactgttttgacaaacacctgagagaaacaacctacaa
aaggaaagatatatcttggcttgtggttttaagggcttcggcccatggtt
cgtttgttttttgtttttttgtttttttctgggtttttgtttgtttgtta
ttgttggtgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_103121644_103122696
seq2: B6Ng01-041L11.b_44_1085 (reverse)

seq1  AGTGAGTAACTTTCATAGATGCCCACAACTTAACTGTAACTCTGAACTGG  50
      |||||||||| ||||||||||||| ||| || |||| || | |||||| |
seq2  AGTGAGTAAC-TTCATAGATGCCCCCAA-TTTACTG-AAATTTGAACT-G  46

seq1  TCAAGGTTCAGTTCCCTATGAAGACAAGCATTCCCATGTCTTCTTGGGCC  100
      ||||||||||| ||||||||||||| |||||||||||||| |||| |  |
seq2  TCAAGGTTCAG-TCCCTATGAAGAC-AGCATTCCCATGTC-TCTTAG--C  91

seq1  CAGCATTCTCACATGGAAAATTAAAGTAGAAGCAGTCCCTACGTTCCAAG  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCA-TCTCACATGGAAAATTAAAGTAGAAGCAGTCCCTACGTTCCAAG  140

seq1  CTTGTCTAAATGCTTAAGATAAAACTGTAAACTGAACGGATACACAGGTC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGT-TAAATGCTTAAGATAAAACTGTAAACTGAACGGATACACAGGTC  189

seq1  TTTTCATTCCTTCACAGGCTTTCCAAGTTTCAAATACTGTATCCGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCCTTCACAGGCTTTCCAAGTTTCAAATACTGTATCCGAACTG  239

seq1  GCACATTGGCTAACTGCAGCTGATGCTGTTCAGGGAACATCAAGTGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGGCTAACTGCAGCTGATGCTGTTCAGGGAACATCAAGTGTCCA  289

seq1  GTGGACAAAGTACTTTCCCACACACTGCAAGAAGAGGGAACAATGTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAAGTACTTTCCCACACACTGCAAGAAGAGGGAACAATGTGTCC  339

seq1  CCCTACCTCTGATTCTTCATATTCCCTAAAAGAAGACATAATCACAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTCTGATTCTTCATATTCCCTAAAAGAAGACATAATCACAGGCT  389

seq1  TTCAAAACTCTGATAAAAAGTAGAGTGCCCACTGCTCTGAGAATAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTCTGATAAAAAGTAGAGTGCCCACTGCTCTGAGAATAAAAAC  439

seq1  AAAGAGTCAGTTATCTTAGAGCACCCTATGAAATTGCTTCAAGGTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCAGTTATCTTAGAGCACCCTATGAAATTGCTTCAAGGTTATAT  489

seq1  TAATGCTCACAGACATCTACTCTTTTTCTGGGAGAAGAATGTATCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTCACAGACATCTACTCTTTTTCTGGGAGAAGAATGTATCCCCAA  539

seq1  CTGTCATTGATGGCAGACTTGGTCATGTGACTGACTTAACCAAGGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTGATGGCAGACTTGGTCATGTGACTGACTTAACCAAGGAAATG  589

seq1  CAGTAGAAATTAATATGCTCTATCTAAGTAAAAATTCAGTATTCGATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAATTAATATGCTCTATCTAAGTAAAAATTCAGTATTCGATCCT  639

seq1  CCCTCTTCTGATTTCCCTGCACTCTGATACTCAGTTGGTGAGCTGAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGATTTCCCTGCACTCTGATACTCAGTTGGTGAGCTGAGCTG  689

seq1  TAGCTCCCACAGAAAGAGTAAAAGAATTCAGGGGAAATAAAACAACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCCACAGAAAGAGTAAAAGAATTCAGGGGAAATAAAACAACTCTT  739

seq1  TATATAATAAGCCACTAAGATAGACAACAGGGCCATTTGTTACTGGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAAGCCACTAAGATAGACAACAGGGCCATTTGTTACTGGAACA  789

seq1  CAACTGGCCCTATTTGGACAGATACAAACTAAAAGATTAAGGTATTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCCCTATTTGGACAGATACAAACTAAAAGATTAAGGTATTCCAA  839

seq1  TTCCCAGGCAACTGCTGAGCCAAAGAGTGGAAGGCAGAGTGAGTTCTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGCAACTGCTGAGCCAAAGAGTGGAAGGCAGAGTGAGTTCTTAG  889

seq1  TGTATCCCATTGAATAAAGTCTTGCAGAGTGGAATTGAGTGTCTTAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCATTGAATAAAGTCTTGCAGAGTGGAATTGAGTGTCTTAACTG  939

seq1  AGCTGCAGATGGCCAAGAATGCACAATCAAGAAGTTTTGACCTTATCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGATGGCCAAGAATGCACAATCAAGAAGTTTTGACCTTATCAAA  989

seq1  CACTCAGAGGCCATAAAAATCACTTGACCAGAAGAGTGACAGGAGGAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAGGCCATAAAAATCACTTGACCAGAAGAGTGACAGGAGGAGAA  1039

seq1  TTC  1053
      |||
seq2  TTC  1042

seq1: chr7_103012910_103013724
seq2: B6Ng01-041L11.g_70_883

seq1  GAATTCAAGCCACTCCTAAATATCCACTTGGTGGAGCTGTAGTAGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCACTCCTAAATATCCACTTGGTGGAGCTGTAGTAGAGGAA  50

seq1  TTCAAGTTGCAAAGGCTGGCAACAAGGCTGGGGTTAAAGGAGGGAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTGCAAAGGCTGGCAACAAGGCTGGGGTTAAAGGAGGGAAGAAG  100

seq1  AACCTGACCCTGAAGAGAATTTTAAATATTGTAAGTGAATGAAATACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACCCTGAAGAGAATTTTAAATATTGTAAGTGAATGAAATACTGG  150

seq1  CTCTCTTTATCATGTAGATATAAATCTCTTCTTCAGTCTTCTCATTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTATCATGTAGATATAAATCTCTTCTTCAGTCTTCTCATTTCTC  200

seq1  ATGTGGATATAGACATAGATTTATGTCATATTTAATAGAGCATTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATATAGACATAGATTTATGTCATATTTAATAGAGCATTTATTTT  250

seq1  GTACATTTTTACATCTTGTGTTATATTCTATTTTCTGAGTTAATTGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTTTACATCTTGTGTTATATTCTATTTTCTGAGTTAATTGGTGA  300

seq1  AAATCAAATCTCACCTTCTTGAAGTGAAAGAGACAGTAAAGATTCATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATCTCACCTTCTTGAAGTGAAAGAGACAGTAAAGATTCATTGA  350

seq1  ATATAATCATCTCACAGATGGTTTGGTCAAGTCTTAAGACAGGAGACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCATCTCACAGATGGTTTGGTCAAGTCTTAAGACAGGAGACATA  400

seq1  TAACCAAGGTCATTTGTCTAGAGTATGTGAGAGGACTTTTTAGTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGGTCATTTGTCTAGAGTATGTGAGAGGACTTTTTAGTCCCTCT  450

seq1  TTCAAAAGCATGTTCCAAAACAGGGATTCTTTATAAAGGATACTTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGCATGTTCCAAAACAGGGATTCTTTATAAAGGATACTTTCATC  500

seq1  ACCTACCCTGCTAGCTCTGGGAGTGTGCCCAGATAAATAAATAGATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCCTGCTAGCTCTGGGAGTGTGCCCAGATAAATAAATAGATGAAA  550

seq1  TGAGTACATTCATATAGAGGTAAGAGCAGGAAGAAGGCATTCCAGTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACATTCATATAGAGGTAAGAGCAGGAAGAAGGCATTCCAGTCTAA  600

seq1  GATTTTAAAAAATTAAGAAAGTTGGATAGTCCTTTTTAACTGTATGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAAAATTAAGAAAGTTGGATAGTCCTTTTTAACTGTATGCATT  650

seq1  TGCCAGACTTCTTACTGTTTTGACAAACACCTGAGAGAAACAACCTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACTTCTTACTGTTTTGACAAACACCTGAGAGAAACAACCTACAA  700

seq1  AAGGAAAGATATATCTTGGCTTGTGGTTTTAAGGGCTTCGGTCCATGGTT  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGGAAAGATATATCTTGGCTTGTGGTTTTAAGGGCTTCGGCCCATGGTT  750

seq1  CGTTTGTTTTTTGTTTTTTTGTTTTTTTCTGGGTTTTTTGTTTGTTTGTT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGTTTGTTTTTTGTTTTTTTGTTTTTTTCTGGG-TTTTTGTTTGTTTGTT  799

seq1  ATTGTTGTTGTTGTT  815
      ||||||| |||||||
seq2  ATTGTTGGTGTTGTT  814