BAC Information

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BAC

Clone NameB6Ng01-042E04
Chromosome7 (Build37)
Map Location 63,460,216 - 63,577,976
singlet/doubletdoublet
Overlap geneHerc2, p
Upstream geneLuzp2, LOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959
Downstream geneLOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E04.bB6Ng01-042E04.g
ACCDH868689DH868690
length1,1751,112
definitionDH868689|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E04, 5' end.DH868690|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,576,793 - 63,577,976)(63,460,216 - 63,461,336)
sequence
gaattcaagaaaactgatcccatagaagcaggtgggagagaatagagaga
ccccagttccaggcacagtaaaaaggtatggatttagagaacttctgcac
aagcagagtgactagcgcatctttgaaaataacttaaaaagtaaatttta
agctgggtgtagtggctcacaactttaatcccaatacttgggcaaatctc
tgagaattgaagccagcctggtctacatagtgagttccaggacagtcagg
gctgtgtagagaaactccatctcaaaaacaaaaacaaaaacaaagaaagt
aaatttcaaatatgttaccataaaaaaaatgattatatggatatgctagt
tggcttgatttaaacacaacattctgttggcacatacattgaaacatcat
attatatttaccaaacaaatatgattacaatttgtcaaccaaataataat
tattataattaaaaaaaataagacctttaaggagctaacacgttagtcca
gtgatgagactgtactgagcatatgcaaggccctttgttcaatcccaatt
aaaatactattcatacaagtctaaaacaccaacaaaaataaaactgagtt
ttccaaatttaaaactcaggacaatacaggtctagaaagtaaacaatgaa
actatgtctccagaaggcaacacagttagaggctggtggtttgatatatt
cagacttttaaattaggtcttgatgtgtagccctaaccagctcactcaaa
tgctgttacacaaatgcttaggggggaatattttgccctgagtttcctct
tcattttcttatggaaaagctagaagtgttgctttcacgtcatgcttagc
acagcaattatcgccaggcttcctgaagccattttgaaagaaagatggaa
ttttaaatattttaatttactaaatatatattaggataataaatagtatt
attcaattaattaatattattaattattgatcacatttgtagtatactgc
cttgattatctataaaatatgtttacatgataatataatataaaacctac
ctttacagcacagtaatcaaaatccctgtttctgaaaatacggctactta
ggatcatccataagggaaaaaaagtagacagccaaactttagcaaatact
acattgaatgaatatcaaagtgagc
gaattctgcctacctatcaagcagctttgtcacatctagacctttttctt
ttttccttgctgctgaatatgctaagttcaggctgggctaatttttaaag
tctgtgtattgacccctgtgaatataggtctgtgttagattttacaagcc
tcattggccatatcccttttattgtgttataatgagaacattccattcca
gttttttgtaaccactggagatgagctggatttgtacgccagagagggaa
gttccctgggaggggctaactaaaactaagaccaaacattctgaaagttg
atactttctttgcgctatagacacaccctttcccaagttgagaatttaaa
tactcgtttcctttttttaggggatataaactcctttacttatagcaaca
aaaaaaccctgaggctcacttgcattctggatttctgaaattcaatattg
ttttgctgtttttaagagttttacaggcagtgcccttgctgctttggtga
aaggccttccagaagctttgcagaggcagtttgagtatgaagatcctatt
gtgagaggtggcaaacagctgctccatagtccattctttaaggtagtatt
tacttatatttaaagtggtcctgtctagctctttgggtaggagagccact
gagagctgttatgggaggtgttgtgccatagacctatttgggagcagatc
ttagtgtcactgaagggctgtatgaagtatgtctcagaaagtggttatgt
gatcaaagcctttattccagaggcatatatataaagcatgctttgaaata
cacagatgttcttagttattgtatgatgtggatgccctaactgttgttgg
tctgagtccctgtgtcttctgaagctgttgtcttcctagaaactcactct
gagaaagtgaggagcttgggagcaagggttctcatagctcaggatggtag
ccagtggcctctctcaatattagcttttgtttctaagactcccatgtttc
atttttgctgactgcagttgctagtggctcttgctgtgactggaatagga
cccacttccctggtggcgcgagaaccattatgggcttggttcgaagaacc
tgcatgggctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_63576793_63577976
seq2: B6Ng01-042E04.b_30_1204 (reverse)

seq1  GCTCACTCTGATA-TCATTCCAATGTAGTATTTTGCTAAAAGTCTTTGCT  49
      ||||||| ||||| ||||| |||||||||| |||||| ||||| || |||
seq2  GCTCACTTTGATATTCATT-CAATGTAGTA-TTTGCT-AAAGT-TTGGCT  46

seq1  GTCTACTTTTTTTCCCTTATAGATGAT-CTTAGTAGCCGTATTTTCAGAA  98
      |||||||||||||||||||| |||||| || |||||||||||||||||||
seq2  GTCTACTTTTTTTCCCTTATGGATGATCCTAAGTAGCCGTATTTTCAGAA  96

seq1  ACAGGATTTTTTGATTACTGTGCTGTAAAGGTAGGTATATAAATAAATAA  148
      |||||   |||||||||||||||||||||||||||| | || ||   || 
seq2  ACAGG-GATTTTGATTACTGTGCTGTAAAGGTAGGT-TTTATAT---TAT  141

seq1  ATAAATAAATGTAAACATA-TTTATAGATAATCAAGGCAGTATAACTACA  197
      || |    ||||||||||| ||||||||||||||||||||||| ||||||
seq2  ATTA--TCATGTAAACATATTTTATAGATAATCAAGGCAGTAT-ACTACA  188

seq1  AATGTGATCAATAATTAATAATATTAATTAATTGAATAATACTATTTATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATCAATAATTAATAATATTAATTAATTGAATAATACTATTTATT  238

seq1  ATCCTAATATATATTTAGTAAATTAAAATATTTAAAATTCCATCTTTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATATATATTTAGTAAATTAAAATATTTAAAATTCCATCTTTCTT  288

seq1  TCAAAATGGCTTCAGGAAGCCTGGCGATAATTGCTGTGCTAAGCATGACG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGCTTCAGGAAGCCTGGCGATAATTGCTGTGCTAAGCATGACG  338

seq1  TGAAAGCAACACTTCTAGCTTTTCCATAAGAAAATGAAGAGGAAACTCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAACACTTCTAGCTTTTCCATAAGAAAATGAAGAGGAAACTCAG  388

seq1  GGCAAAATATTCCCCCCTAAGCATTTGTGTAACAGCATTTGAGTGAGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATATTCCCCCCTAAGCATTTGTGTAACAGCATTTGAGTGAGCTG  438

seq1  GTTAGGGCTACACATCAAGACCTAATTTAAAAGTCTGAATATATCAAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGCTACACATCAAGACCTAATTTAAAAGTCTGAATATATCAAACC  488

seq1  ACCAGCCTCTAACTGTGTTGCCTTCTGGAGACATAGTTTCATTGTTTACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTCTAACTGTGTTGCCTTCTGGAGACATAGTTTCATTGTTTACT  538

seq1  TTCTAGACCTGTATTGTCCTGAGTTTTAAATTTGGAAAACTCAGTTTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACCTGTATTGTCCTGAGTTTTAAATTTGGAAAACTCAGTTTTAT  588

seq1  TTTTGTTGGTGTTTTAGACTTGTATGAATAGTATTTTAATTGGGATTGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGGTGTTTTAGACTTGTATGAATAGTATTTTAATTGGGATTGAA  638

seq1  CAAAGGGCCTTGCATATGCTCAGTACAGTCTCATCACTGGACTAACGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCCTTGCATATGCTCAGTACAGTCTCATCACTGGACTAACGTGT  688

seq1  TAGCTCCTTAAAGGTCTTATTTTTTTTAATTATAATAATTATTATTTGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTAAAGGTCTTATTTTTTTTAATTATAATAATTATTATTTGGT  738

seq1  TGACAAATTGTAATCATATTTGTTTGGTAAATATAATATGATGTTTCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATTGTAATCATATTTGTTTGGTAAATATAATATGATGTTTCAAT  788

seq1  GTATGTGCCAACAGAATGTTGTGTTTAAATCAAGCCAACTAGCATATCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCCAACAGAATGTTGTGTTTAAATCAAGCCAACTAGCATATCCA  838

seq1  TATAATCATTTTTTTTATGGTAACATATTTGAAATTTACTTTCTTTGTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCATTTTTTTTATGGTAACATATTTGAAATTTACTTTCTTTGTTT  888

seq1  TTGTTTTTGTTTTTGAGATGGAGTTTCTCTACACAGCCCTGACTGTCCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTGAGATGGAGTTTCTCTACACAGCCCTGACTGTCCTG  938

seq1  GAACTCACTATGTAGACCAGGCTGGCTTCAATTCTCAGAGATTTGCCCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTATGTAGACCAGGCTGGCTTCAATTCTCAGAGATTTGCCCAA  988

seq1  GTATTGGGATTAAAGTTGTGAGCCACTACACCCAGCTTAAAATTTACTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGGATTAAAGTTGTGAGCCACTACACCCAGCTTAAAATTTACTTT  1038

seq1  TTAAGTTATTTTCAAAGATGCGCTAGTCACTCTGCTTGTGCAGAAGTTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTATTTTCAAAGATGCGCTAGTCACTCTGCTTGTGCAGAAGTTCT  1088

seq1  CTAAATCCATACCTTTTTACTGTGCCTGGAACTGGGGTCTCTCTATTCTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCATACCTTTTTACTGTGCCTGGAACTGGGGTCTCTCTATTCTC  1138

seq1  TCCCACCTGCTTCTATGGGATCAGTTTTCTTGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGCTTCTATGGGATCAGTTTTCTTGAATTC  1175

seq1: chr7_63460216_63461336
seq2: B6Ng01-042E04.g_65_1176

seq1  GAATTCTGCCTACCTATCAAGCAGCTTTGTCACATCTAGACCTTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTACCTATCAAGCAGCTTTGTCACATCTAGACCTTTTTCTT  50

seq1  TTTTCCTTGCTGCTGAATATGCTAAGTTCAGGCTGGGCTAATTTTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGCTGCTGAATATGCTAAGTTCAGGCTGGGCTAATTTTTAAAG  100

seq1  TCTGTGTATTGACCCCTGTGAATATAGGTCTGTGTTAGATTTTACAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATTGACCCCTGTGAATATAGGTCTGTGTTAGATTTTACAAGCC  150

seq1  TCATTGGCCATATCCCTTTTATTGTGTTATAATGAGAACATTCCATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCCATATCCCTTTTATTGTGTTATAATGAGAACATTCCATTCCA  200

seq1  GTTTTTTGTAACCACTGGAGATGAGCTGGATTTGTACGCCAGAGAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTAACCACTGGAGATGAGCTGGATTTGTACGCCAGAGAGGGAA  250

seq1  GTTCCCTGGGAGGGGCTAACTAAAACTAAGACCAAACATTCTGAAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGGGAGGGGCTAACTAAAACTAAGACCAAACATTCTGAAAGTTG  300

seq1  ATACTTTCTTTGCGCTATAGACACACCCTTTCCCAAGTTGAGAATTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCTTTGCGCTATAGACACACCCTTTCCCAAGTTGAGAATTTAAA  350

seq1  TACTCGTTTCCTTTTTTTAGGGGATATAAACTCCTTTACTTATAGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGTTTCCTTTTTTTAGGGGATATAAACTCCTTTACTTATAGCAACA  400

seq1  AAAAAACCCTGAGGCTCACTTGCATTCTGGATTTCTGAAATTCAATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCTGAGGCTCACTTGCATTCTGGATTTCTGAAATTCAATATTG  450

seq1  TTTTGCTGTTTTTAAGAGTTTTACAGGCAGTGCCCTTGCTGCTTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTTTTTAAGAGTTTTACAGGCAGTGCCCTTGCTGCTTTGGTGA  500

seq1  AAGGCCTTCCAGAAGCTTTGCAGAGGCAGTTTGAGTATGAAGATCCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTCCAGAAGCTTTGCAGAGGCAGTTTGAGTATGAAGATCCTATT  550

seq1  GTGAGAGGTGGCAAACAGCTGCTCCATAGTCCATTCTTTAAGGTAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGTGGCAAACAGCTGCTCCATAGTCCATTCTTTAAGGTAGTATT  600

seq1  TACTTATATTTAAAGTGGTCCTGTCTAGCTCTTTGGGTAGGAGAGCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATATTTAAAGTGGTCCTGTCTAGCTCTTTGGGTAGGAGAGCCACT  650

seq1  GAGAGCTGTTATGGGAGGTGTTGTGCCATAGACCTATTTGGGAGCAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGTTATGGGAGGTGTTGTGCCATAGACCTATTTGGGAGCAGATC  700

seq1  TTAGTGTCACTGAAGGGCTGTATGAAGTATGTCTCAGAAAGTGGTTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCACTGAAGGGCTGTATGAAGTATGTCTCAGAAAGTGGTTATGT  750

seq1  GATCAAAGCCTTTATTCCAGAGGCATATATATAAAGCATGCTTTGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGCCTTTATTCCAGAGGCATATATATAAAGCATGCTTTGAAATA  800

seq1  CACAGATGTTCTTAGTTATTGTATGATGTGGATGCCCTAACTGTTGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGTTCTTAGTTATTGTATGATGTGGATGCCCTAACTGTTGTTGG  850

seq1  TCTGAGTCCCTGTGTCTTCTGAAGCTGTTGTCTTCCTAGAAACTCACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCCCTGTGTCTTCTGAAGCTGTTGTCTTCCTAGAAACTCACTCT  900

seq1  GAGAAAGTGAGGAGCTTGGGAGCAAGGGTTCTCATAGCTCAGGATGGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGAGGAGCTTGGGAGCAAGGGTTCTCATAGCTCAGGATGGTAG  950

seq1  CCAGTGGCCTTCTCTCAAATATTAGC-TTTGTTTCTAAGACTCCCCATGT  999
      ||||||||| |||||| ||||||||| ||||||||||||||| |||||||
seq2  CCAGTGGCC-TCTCTC-AATATTAGCTTTTGTTTCTAAGACT-CCCATGT  997

seq1  TTCCAATTTTTTGCTGACTGCAGGTGCTAGTAGCTCTTGCTTGTGACCTG  1049
      |||    |||||||||||||||| ||||||| |||||||| ||||| |||
seq2  TTC---ATTTTTGCTGACTGCAGTTGCTAGTGGCTCTTGC-TGTGA-CTG  1042

seq1  GAATTAGACACAC-TCCCTTGCTGCGCAGAGACCCATAAATGGGCTTGGT  1098
      ||||  ||| ||| ||||| |  |||| |||| ||||  |||||||||||
seq2  GAATAGGACCCACTTCCCTGGTGGCGC-GAGAACCAT-TATGGGCTTGGT  1090

seq1  TCCGAAGATACTGCATGGCCTCC  1121
      | ||||||  |||||||| ||||
seq2  T-CGAAGAACCTGCATGGGCTCC  1112